Multiple problems with latest portupgrade

Tom Parquette tparquet at
Tue Apr 15 17:47:17 PDT 2003

Please CC me on any replies.  I'm not sure my list subscription is 
working right.

I'm doing a general upgrade on my machine and I'm having multiple problems.
This is a 5.0-CURRENT (as of a month ago) with ports-all updated to 
Sunday (4/13).
The entire script capture file is too big to post (1.6g) so I'm going to 
take it one or two at a time.

Things like seti at home and Java I understand.
p5-Mysql wants p5-Data-ShowTable which it suspects has an older version 
I have gone back the make deinstall/make reinstall the entire chain and 
the problem remains.

Mozilla also failed but a make/make install outside of portupgrade got 
it back on the air.

I'm also worried about the following message that I get many times 
during the portupgrade run.
I have no clue what it is trying to tell  me.
Pkg_delete: package gmake-3.80 has no origin record

Below is a highly edited report from my portupgrade run.
Any help/insights would be appreciated.

-------------- next part --------------
Begin cvsup run for ports-all...
Begin update of portupgrade ports INDEX...
Updating the ports index ... fileroller-2.2.3,1:"" non-existent -- dependency list incomplete
fileroller-2.2.3,1:"/usr/ports/graphics/libgnomecanfreeze-2.5_1" non-existent -- dependency list incomplete
vas art_lgpl_2.5:/usr/ports/graphics/libart_lgpl2 gnome-2.200:/usr/ports/x11/libgnome bonoboui-2.0:/usr/ports/x11-toolkits/libbonoboui gnomeui-2.200:/usr/ports/x11-toolkits/libgnomeui: malformed entry: vas art_lgpl_2.5:/usr/ports/graphics/libart_lgpl2 gnome-2.200:/usr/ports/x11/libgnome bonoboui-2.0:/usr/ports/x11-toolkits/libbonoboui gnomeui-2.200:/usr/ports/x11-toolkits/libgnomeui|lha:/usr/ports/archivers/lha  lzop:/usr/ports/archivers/lzop bzip:/usr/ports/archivers/bzip   /usr/X11R6/share/gnome/.keep_me:/usr/ports/misc/gnomehier  /usr/X11R6/libdata/pkgconfig/gnome-mime-data-2.0.pc:/usr/ports/misc/gnomemimedata                   |
zh-gnumeric-1.0.13:"" non-existent -- dependency list incomplete
zh-gnumeric-1.0.13:"" non-existent -- dependency list incomplete
bo.2:/usr/ports/devel/bonobo gda-client.0:/usr/ports/databases/libgda gnomedb.0:/usr/ports/databases/gnomedb glade.4:/usr/ports/devel/libglade gal.23:/usr/ports/x11-toolkits/gal: malformed entry: bo.2:/usr/ports/devel/bonobo gda-client.0:/usr/ports/databases/libgda gnomedb.0:/usr/ports/databases/gnomedb glade.4:/usr/ports/devel/libglade gal.23:/usr/ports/x11-toolkits/gal|guppi-gnumeric:/usr/ports/math/guppi /usr/local/bin/python2.2:/usr/ports/lang/python /usr/local/bin/perl5.6.1:/usr/ports/lang/perl5   /usr/X11R6/share/gnome/.keep_me:/usr/ports/misc/gnomehier                 |
pharmacy-0.2.1a:"" non-existent -- dependency list incomplete
pharmacy-0.2.1a:"/usr/ports/www/gtkhtmlpicprog-1.1" non-existent -- dependency list incomplete
 panel_applet.5:/usr/ports/x11/libpanel: malformed entry:  panel_applet.5:/usr/ports/x11/libpanel|  /usr/X11R6/share/gnome/.keep_me:/usr/ports/misc/gnomehier                      |
Begin actual portupgrade run for all installed ports...
morpheus-0.3:"" non-existent -- dependency list incomplete
morpheus-0.3:"/usr/portsmultivideo-0.1.0" non-existent -- dependency list incomplete
/devel/libglade gal.23:/usr/ports/x11-toolkits/gal glibwww.1:/usr/ports/www/glibwww gtkhtml-1.1.3:/usr/ports/www/gtkhtml panel_applet.5:/usr/ports/x11/libpanel: malformed entry: /devel/libglade gal.23:/usr/ports/x11-toolkits/gal glibwww.1:/usr/ports/www/glibwww gtkhtml-1.1.3:/usr/ports/www/gtkhtml panel_applet.5:/usr/ports/x11/libpanel|  /usr/X11R6/share/gnome/.keep_me:/usr/ports/misc/gnomehier                      |
** 'astro/setiathome' is marked as IGNORE:
	"is forbidden: 'Exploitable buffer overflow.'"
** 'devel/p5-File-Spec' is marked as IGNORE:
	This port is for perl 5.6.0 and under only.
** 'java/linux-sun-jdk13' is marked as IGNORE:
	You must manually fetch the Java 2 Development Kit archive (j2sdk-1_3_1_07-linux-i586.bin) from, download the "Linux GNUZIP Tar shell script" into /usr/ports/distfiles and then run make again
--->  Upgrading 'p5-Mysql-modules-1.2216' to 'p5-Mysql-modules-1.2219' (databases/p5-Mysql)
--->  Building '/usr/ports/databases/p5-Mysql'
===>  Cleaning for mysql-client-3.23.56
===>  Cleaning for p5-DBI-1.34_1
===>  Cleaning for libtool-1.3.4_4
===>  Cleaning for p5-Data-ShowTable-3.3
===>  Cleaning for p5-Storable-2.06
===>  Cleaning for p5-Test-Harness-2.26
===>  Cleaning for p5-Test-Simple-0.47_1
===>  Cleaning for perl-5.6.1_11
===>  Cleaning for p5-Net-Daemon-0.36
===>  Cleaning for p5-PlRPC-0.2016
===>  Cleaning for p5-Mysql-modules-1.2219
===>  Extracting for p5-Mysql-modules-1.2219
>> Checksum OK for Msql-Mysql-modules-1.2219.tar.gz.
===>  Patching for p5-Mysql-modules-1.2219
===>   p5-Mysql-modules-1.2219 depends on file: /usr/local/lib/perl5/site_perl/5.6.1/Data/ - not found
===>    Verifying install for /usr/local/lib/perl5/site_perl/5.6.1/Data/ in /usr/ports/devel/p5-Data-ShowTable
===>  Extracting for p5-Data-ShowTable-3.3
>> Checksum OK for Data-ShowTable-3.3.tar.gz.
===>  Patching for p5-Data-ShowTable-3.3
===>  Applying FreeBSD patches for p5-Data-ShowTable-3.3
===>   p5-Data-ShowTable-3.3 depends on file: /usr/local/bin/perl5.6.1 - found
===>  Configuring for p5-Data-ShowTable-3.3
Checking if your kit is complete...
Looks good
Writing Makefile for Data::ShowTable
===>  Building for p5-Data-ShowTable-3.3
cp blib/lib/Data/
cp showtable blib/script/showtable
/usr/local/bin/perl5.6.1 "-MExtUtils::MY"  -e "MY->fixin(shift)" blib/script/showtable
Manifying blib/man1/showtable.1
Manifying blib/man3/Data::ShowTable.3
===>  Installing for p5-Data-ShowTable-3.3
===>  p5-Data-ShowTable-3.3 is already installed - perhaps an older version?
      If so, you may wish to ``make deinstall'' and install
      this port again by ``make reinstall'' to upgrade it properly.
      If you really wish to overwrite the old port of p5-Data-ShowTable-3.3
      without deleting it first, set the variable "FORCE_PKG_REGISTER"
      in your environment or the "make install" command line.
*** Error code 1

Stop in /usr/ports/devel/p5-Data-ShowTable.
*** Error code 1

Stop in /usr/ports/databases/p5-Mysql.
** Command failed [exit code 1]: /usr/bin/script -qa /tmp/portupgrade78427.49 make
** Fix the problem and try again.
** Package name changed from 'openldap' (net/openldap20) to 'openldap20' (net/openldap20).
** No need to upgrade 'openldap-2.0.25_3' (>= openldap20-2.0.25_3). (specify -f to force)
--->  Skipping 'databases/mysql323-server' (mysql-server-3.23.55) because 'databases/p5-Mysql' (p5-Mysql-modules-1.2216) failed
--->  Skipping 'security/cyrus-sasl2' (cyrus-sasl-2.1.12) because 'databases/mysql323-server' (mysql-server-3.23.55) failed
mmc-0.5:"" non-existent -- dependency list incomplete
e/.keep_me:/usr/ports/misc/gnomehier                      : malformed entry: e/.keep_me:/usr/ports/misc/gnomehier                      |
--->  Skipping 'graphics/eog2' (eog2-2.2.0) because 'graphics/librsvg2' (librsvg2-2.2.3_1) failed
--->  Skipping 'x11/gdm2' (gdm2- because 'graphics/librsvg2' (librsvg2-2.2.3_1) failed
--->  Skipping 'x11-fm/nautilus2' (nautilus2-2.2.1) because 'graphics/librsvg2' (librsvg2-2.2.3_1) failed
--->  Skipping 'editors/AbiWord2' (AbiWord2-gnome-1.1.4_1) because 'graphics/librsvg2' (librsvg2-2.2.3_1) failed
--->  Skipping 'multimedia/nautilus-media' (nautilus-media-0.2.1) because 'x11-fm/nautilus2' (nautilus2-2.2.1) failed
--->  Skipping 'x11-fonts/fontilus' (fontilus-0.4) because 'x11-fm/nautilus2' (nautilus2-2.2.1) failed
--->  Skipping 'x11/gnome2' (gnome2-2.2.0) because '' (ggv2-2.0.0) failed
--->  Skipping 'x11/gnome2-fifth-toe' (gnome2-fifth-toe-2.2.0_7) because 'audio/arts' (arts-1.1,1) failed
** The following packages were not installed or upgraded (*:skipped / !:failed)
	! databases/p5-Mysql (p5-Mysql-modules-1.2216)	(depend object)
	* databases/mysql323-server (mysql-server-3.23.55)
	* security/cyrus-sasl2 (cyrus-sasl-2.1.12)
	* security/cyrus-sasl (cyrus-sasl-1.5.28)
	! emulators/wine (wine-2003.03.18)	(missing header)
	! www/mozilla-headers-devel (mozilla-headers-1.4a,1)	(unknown build error)
	! www/mozilla (mozilla-1.3,2)	(unknown build error)
	! x11-toolkits/qt31 (qt-3.1.1_4)	(unknown build error)
	* audio/arts (arts-1.1,1)
	* x11/kdelibs3 (kdelibs-3.1)
	* net/kdenetwork3 (kdenetwork-3.1)
	* www/flashplugin-mozilla (flashplugin-mozilla-0.4.10_2)
	* misc/kde3-i18n-af (af-kde-i18n-3.1)
	* multimedia/kdemultimedia3 (kdemultimedia-3.1)
	* x11/kdebase3 (kdebase-3.1_1)
	! multimedia/libxine (libxine-1.0.b6)	(new compiler error)
	! www/mozilla-gtk2 (mozilla-1.3)	(missing header)
	* games/kdegames3 (kdegames-3.1)
	!  (mozilla-headers-1.3,2)	(missing origin)
	* misc/kdeutils3 (kdeutils-3.1)
	* editors/koffice-kde3 (koffice-1.2.1,1)
	!  (mozilla-1.4a)	(missing origin)
	* graphics/kdegraphics3 (kdegraphics-3.1)
	* x11/kde3 (kde-3.1)
	* multimedia/totem (totem-0.95.1)
	* www/galeon2 (galeon2-1.3.3)
	! print/ggv2 (ggv2-1.99.98)	(unknown build error)
	! math/gnumeric2 (gnumeric2-1.1.16_1)	(install error)
	! graphics/librsvg2 (librsvg2-2.2.3_1)	(unknown build error)
	* graphics/eog2 (eog2-2.2.0)
	* x11/gdm2 (gdm2-
	* x11-fm/nautilus2 (nautilus2-2.2.1)
	* editors/AbiWord2 (AbiWord2-gnome-1.1.4_1)
	* multimedia/nautilus-media (nautilus-media-0.2.1)
	* x11-fonts/fontilus (fontilus-0.4)
	* x11/gnome2 (gnome2-2.2.0)
	* x11/gnome2-fifth-toe (gnome2-fifth-toe-2.2.0_7)
--->  Backing up the old version
--->  Uninstalling the old version
Stale dependency: eog2-2.2.0 --> librsvg2-2.2.3_1 -- manually run 'pkgdb -F' to fix, or specify -O to force.
--->  Upgrading 'gdm2-' to 'gdm2-' (x11/gdm2)
--->  Building '/usr/ports/x11/gdm2'
--->  Backing up the old version
--->  Uninstalling the old version
Stale dependency: gdm2- --> librsvg2-2.2.3_1 -- manually run 'pkgdb -F' to fix, or specify -O to force.
--->  Upgrading 'nautilus2-2.2.1' to 'nautilus2-' (x11-fm/nautilus2)
--->  Building '/usr/ports/x11-fm/nautilus2'
--->  Backing up the old version
--->  Uninstalling the old version
Stale dependency: nautilus2-2.2.1 --> librsvg2-2.2.3_1 -- manually run 'pkgdb -F' to fix, or specify -O to force.
** The following packages were not installed or upgraded (*:skipped / !:failed)
--->  Skipping 'x11/gnome2' (gnome2-2.2.0) because 'graphics/eog2' (eog2-2.2.0) failed
--->  Skipping 'x11/gnome2-fifth-toe' (gnome2-fifth-toe-2.2.0_7) because 'audio/arts' (arts-1.1,1) failed
	! databases/mysql323-server (mysql-server-3.23.55)	(uninstall error)
	* security/cyrus-sasl (cyrus-sasl-1.5.28)
	* security/cyrus-sasl2 (cyrus-sasl-2.1.12)
	! audio/arts (arts-1.1,1)	(uninstall error)
	* x11/kdelibs3 (kdelibs-3.1)
	* misc/kde3-i18n-af (af-kde-i18n-3.1)
	* games/kdegames3 (kdegames-3.1)
	* net/kdenetwork3 (kdenetwork-3.1)
	* misc/kdeutils3 (kdeutils-3.1)
	* editors/koffice-kde3 (koffice-1.2.1,1)
	* multimedia/kdemultimedia3 (kdemultimedia-3.1)
	* x11/kdebase3 (kdebase-3.1_1)
	* graphics/kdegraphics3 (kdegraphics-3.1)
	* x11/kde3 (kde-3.1)
	! multimedia/totem (totem-0.95.1)	(uninstall error)
	! graphics/eog2 (eog2-2.2.0)	(uninstall error)
	! x11/gdm2 (gdm2-	(uninstall error)
	! x11-fm/nautilus2 (nautilus2-2.2.1)	(uninstall error)
	* x11/gnome2 (gnome2-2.2.0)
	* x11/gnome2-fifth-toe (gnome2-fifth-toe-2.2.0_7)

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