[Bug 267668] databases/mongo60: 6.0.2 Segmentation fault
Date: Wed, 09 Nov 2022 13:13:46 UTC
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=267668
Bug ID: 267668
Summary: databases/mongo60: 6.0.2 Segmentation fault
Product: Ports & Packages
Version: Latest
Hardware: Any
OS: Any
Status: New
Severity: Affects Only Me
Priority: ---
Component: Individual Port(s)
Assignee: ports-bugs@FreeBSD.org
Reporter: jason.d.jenkins@gmail.com
A couple of points:
After a fresh install (I have tried with precompiled package and built package
from ports) mongod fails to start. See below for more details.
1. When starting mongod using service control, mongod fails to start with the
following error:
Starting mongod.
/usr/local/etc/rc.d/mongod: WARNING: failed to start mongod
2. When starting mongod using the direct command, it fails to start as well (on
the first attempt). The output is below:
mongod --dbpath /pools/db/mongod/6.0.2 --bind_ip_all
{"t":{"$date":"2022-11-09T06:14:07.732+00:00"},"s":"I", "c":"NETWORK",
"id":4915701, "ctx":"-","msg":"Initialized wire
specification","attr":{"spec":{"incomingExternalClient":{"minWireVersion":0,"maxWireVersion":17},"incomingInternalClient":{"minWireVersion":0,"maxWireVersion":17},"outgoing":{"minWireVersion":6,"maxWireVersion":17},"isInternalClient":true}}}
{"t":{"$date":"2022-11-09T06:14:07.734+00:00"},"s":"I", "c":"CONTROL",
"id":23285, "ctx":"-","msg":"Automatically disabling TLS 1.0, to force-enable
TLS 1.0 specify --sslDisabledProtocols 'none'"}
{"t":{"$date":"2022-11-09T06:14:07.735+00:00"},"s":"I", "c":"NETWORK",
"id":4648602, "ctx":"thread1","msg":"Implicit TCP FastOpen in use."}
{"t":{"$date":"2022-11-09T06:14:07.736+00:00"},"s":"I", "c":"REPL",
"id":5123008, "ctx":"thread1","msg":"Successfully registered
PrimaryOnlyService","attr":{"service":"TenantMigrationDonorService","namespace":"config.tenantMigrationDonors"}}
{"t":{"$date":"2022-11-09T06:14:07.736+00:00"},"s":"I", "c":"REPL",
"id":5123008, "ctx":"thread1","msg":"Successfully registered
PrimaryOnlyService","attr":{"service":"TenantMigrationRecipientService","namespace":"config.tenantMigrationRecipients"}}
{"t":{"$date":"2022-11-09T06:14:07.736+00:00"},"s":"I", "c":"REPL",
"id":5123008, "ctx":"thread1","msg":"Successfully registered
PrimaryOnlyService","attr":{"service":"ShardSplitDonorService","namespace":"config.tenantSplitDonors"}}
{"t":{"$date":"2022-11-09T06:14:07.736+00:00"},"s":"I", "c":"CONTROL",
"id":5945603, "ctx":"thread1","msg":"Multi threading initialized"}
{"t":{"$date":"2022-11-09T06:14:07.737+00:00"},"s":"I", "c":"CONTROL",
"id":4615611, "ctx":"initandlisten","msg":"MongoDB
starting","attr":{"pid":2484,"port":27017,"dbPath":".","architecture":"64-bit","host":"dart"}}
{"t":{"$date":"2022-11-09T06:14:07.737+00:00"},"s":"I", "c":"CONTROL",
"id":23403, "ctx":"initandlisten","msg":"Build
Info","attr":{"buildInfo":{"version":"6.0.2","gitVersion":"nogitversion","openSSLVersion":"OpenSSL
1.1.1o-freebsd 3 May
2022","modules":[],"allocator":"system","environment":{"distarch":"x86_64","target_arch":"x86_64"}}}}
{"t":{"$date":"2022-11-09T06:14:07.737+00:00"},"s":"I", "c":"CONTROL",
"id":51765, "ctx":"initandlisten","msg":"Operating
System","attr":{"os":{"name":"FreeBSD","version":"FreeBSD 13.1-RELEASE-p3
GENERIC\n"}}}
{"t":{"$date":"2022-11-09T06:14:07.737+00:00"},"s":"I", "c":"CONTROL",
"id":21951, "ctx":"initandlisten","msg":"Options set by command
line","attr":{"options":{"net":{"bindIp":"*"},"storage":{"dbPath":"."}}}}
{"t":{"$date":"2022-11-09T06:14:07.738+00:00"},"s":"I", "c":"STORAGE",
"id":22315, "ctx":"initandlisten","msg":"Opening
WiredTiger","attr":{"config":"create,cache_size=7608M,session_max=33000,eviction=(threads_min=4,threads_max=4),config_base=false,statistics=(fast),log=(enabled=true,remove=true,path=journal,compressor=snappy),builtin_extension_config=(zstd=(compression_level=6)),file_manager=(close_idle_time=600,close_scan_interval=10,close_handle_minimum=2000),statistics_log=(wait=0),json_output=(error,message),verbose=[recovery_progress:1,checkpoint_progress:1,compact_progress:1,backup:0,checkpoint:0,compact:0,evict:0,history_store:0,recovery:0,rts:0,salvage:0,tiered:0,timestamp:0,transaction:0,verify:0,log:0],"}}
{"t":{"$date":"2022-11-09T06:14:08.357+00:00"},"s":"I", "c":"STORAGE",
"id":4795906, "ctx":"initandlisten","msg":"WiredTiger
opened","attr":{"durationMillis":619}}
{"t":{"$date":"2022-11-09T06:14:08.357+00:00"},"s":"I", "c":"RECOVERY",
"id":23987, "ctx":"initandlisten","msg":"WiredTiger
recoveryTimestamp","attr":{"recoveryTimestamp":{"$timestamp":{"t":0,"i":0}}}}
{"t":{"$date":"2022-11-09T06:14:08.366+00:00"},"s":"W", "c":"CONTROL",
"id":22120, "ctx":"initandlisten","msg":"Access control is not enabled for
the database. Read and write access to data and configuration is
unrestricted","tags":["startupWarnings"]}
{"t":{"$date":"2022-11-09T06:14:08.366+00:00"},"s":"W", "c":"CONTROL",
"id":22138, "ctx":"initandlisten","msg":"You are running this process as the
root user, which is not recommended","tags":["startupWarnings"]}
{"t":{"$date":"2022-11-09T06:14:08.366+00:00"},"s":"I", "c":"STORAGE",
"id":20320,
"ctx":"initandlisten","msg":"createCollection","attr":{"namespace":"admin.system.version","uuidDisposition":"provided","uuid":{"uuid":{"$uuid":"27d41cee-da5b-430c-a60e-f7b3121b3725"}},"options":{"uuid":{"$uuid":"27d41cee-da5b-430c-a60e-f7b3121b3725"}}}}
{"t":{"$date":"2022-11-09T06:14:08.372+00:00"},"s":"I", "c":"INDEX",
"id":20345, "ctx":"initandlisten","msg":"Index build: done
building","attr":{"buildUUID":null,"collectionUUID":{"uuid":{"$uuid":"27d41cee-da5b-430c-a60e-f7b3121b3725"}},"namespace":"admin.system.version","index":"_id_","ident":"index-1-156332478393131353","collectionIdent":"collection-0-156332478393131353","commitTimestamp":null}}
{"t":{"$date":"2022-11-09T06:14:08.372+00:00"},"s":"I", "c":"REPL",
"id":20459, "ctx":"initandlisten","msg":"Setting
featureCompatibilityVersion","attr":{"newVersion":"6.0"}}
{"t":{"$date":"2022-11-09T06:14:08.372+00:00"},"s":"I", "c":"REPL",
"id":5853300, "ctx":"initandlisten","msg":"current featureCompatibilityVersion
value","attr":{"featureCompatibilityVersion":"6.0","context":"setFCV"}}
{"t":{"$date":"2022-11-09T06:14:08.372+00:00"},"s":"I", "c":"NETWORK",
"id":4915702, "ctx":"initandlisten","msg":"Updated wire
specification","attr":{"oldSpec":{"incomingExternalClient":{"minWireVersion":0,"maxWireVersion":17},"incomingInternalClient":{"minWireVersion":0,"maxWireVersion":17},"outgoing":{"minWireVersion":6,"maxWireVersion":17},"isInternalClient":true},"newSpec":{"incomingExternalClient":{"minWireVersion":0,"maxWireVersion":17},"incomingInternalClient":{"minWireVersion":17,"maxWireVersion":17},"outgoing":{"minWireVersion":17,"maxWireVersion":17},"isInternalClient":true}}}
{"t":{"$date":"2022-11-09T06:14:08.372+00:00"},"s":"I", "c":"NETWORK",
"id":4915702, "ctx":"initandlisten","msg":"Updated wire
specification","attr":{"oldSpec":{"incomingExternalClient":{"minWireVersion":0,"maxWireVersion":17},"incomingInternalClient":{"minWireVersion":17,"maxWireVersion":17},"outgoing":{"minWireVersion":17,"maxWireVersion":17},"isInternalClient":true},"newSpec":{"incomingExternalClient":{"minWireVersion":0,"maxWireVersion":17},"incomingInternalClient":{"minWireVersion":17,"maxWireVersion":17},"outgoing":{"minWireVersion":17,"maxWireVersion":17},"isInternalClient":true}}}
{"t":{"$date":"2022-11-09T06:14:08.372+00:00"},"s":"I", "c":"REPL",
"id":5853300, "ctx":"initandlisten","msg":"current featureCompatibilityVersion
value","attr":{"featureCompatibilityVersion":"6.0","context":"startup"}}
{"t":{"$date":"2022-11-09T06:14:08.372+00:00"},"s":"I", "c":"STORAGE",
"id":5071100, "ctx":"initandlisten","msg":"Clearing temp directory"}
{"t":{"$date":"2022-11-09T06:14:08.372+00:00"},"s":"I", "c":"CONTROL",
"id":20536, "ctx":"initandlisten","msg":"Flow Control is enabled on this
deployment"}
{"t":{"$date":"2022-11-09T06:14:08.372+00:00"},"s":"I", "c":"FTDC",
"id":20625, "ctx":"initandlisten","msg":"Initializing full-time diagnostic
data capture","attr":{"dataDirectory":"./diagnostic.data"}}
{"t":{"$date":"2022-11-09T06:14:08.373+00:00"},"s":"F", "c":"CONTROL",
"id":6384300, "ctx":"initandlisten","msg":"Writing fatal
message","attr":{"message":"Invalid access at address: 0x0\n"}}
{"t":{"$date":"2022-11-09T06:14:08.373+00:00"},"s":"F", "c":"CONTROL",
"id":6384300, "ctx":"initandlisten","msg":"Writing fatal
message","attr":{"message":"Got signal: 11 (Segmentation fault).\n"}}
{"t":{"$date":"2022-11-09T06:14:08.432+00:00"},"s":"E", "c":"CONTROL",
"id":31430, "ctx":"initandlisten","msg":"Error collecting stack
trace","attr":{"error":"unw_get_proc_name(7FFFFFFFF8A3): unspecified (general)
error\nunw_get_proc_name(806310008): unspecified (general)
error\nunw_get_proc_name(7FFFFFFFF8A3): unspecified (general)
error\nunw_get_proc_name(806310008): unspecified (general) error\n"}}
{"t":{"$date":"2022-11-09T06:14:08.432+00:00"},"s":"I", "c":"CONTROL",
"id":31380,
"ctx":"initandlisten","msg":"BACKTRACE","attr":{"bt":{"backtrace":[{"a":"6116D20","b":"1021000","o":"50F5D20","s":"_ZN5mongo15printStackTraceERNS_14StackTraceSinkE","C":"mongo::printStackTrace(mongo::StackTraceSink&)","s+":"130"},{"a":"61135D4","b":"1021000","o":"50F25D4","s":"abruptQuitWithAddrSignal","C":"signed
char","s+":"184"},{"a":"8072E958E","b":"8072CF000","o":"1A58E","s":"_pthread_sigmask","s+":"54E"},{"a":"8072E8B3F","b":"8072CF000","o":"19B3F","s":"_pthread_setschedparam","s+":"82F"},{"a":"7FFFFFFFF8A3"},{"a":"4D6B84A","b":"1021000","o":"3D4A84A","s":"_ZN5mongo8LockHead27migratePartitionedLockHeadsEv","C":"mongo::LockHead::migratePartitionedLockHeads()","s+":"AA"},{"a":"4D6C9F7","b":"1021000","o":"3D4B9F7","s":"_ZN5mongo11LockManager4lockENS_10ResourceIdEPNS_11LockRequestENS_8LockModeE","C":"mongo::LockManager::lock(mongo::ResourceId,
mongo::LockRequest*,
mongo::LockMode)","s+":"1E7"},{"a":"4D7AF81","b":"1021000","o":"3D59F81","s":"_ZN5mongo10LockerImpl10_lockBeginEPNS_16OperationContextENS_10ResourceIdENS_8LockModeE","C":"mongo::LockerImpl::_lockBegin(mongo::OperationContext*,
mongo::ResourceId,
mongo::LockMode)","s+":"C91"},{"a":"4D755BB","b":"1021000","o":"3D545BB","s":"_ZN5mongo10LockerImpl4lockEPNS_16OperationContextENS_10ResourceIdENS_8LockModeENS_6Date_tE","C":"mongo::LockerImpl::lock(mongo::OperationContext*,
mongo::ResourceId, mongo::LockMode,
mongo::Date_t)","s+":"2B"},{"a":"4D69FB9","b":"1021000","o":"3D48FB9","s":"_ZN5mongo4Lock6DBLockC2EPNS_16OperationContextENS_10StringDataENS_8LockModeENS_6Date_tEb","C":"mongo::Lock::DBLock::DBLock(mongo::OperationContext*,
mongo::StringData, mongo::LockMode, mongo::Date_t,
bool)","s+":"E9"},{"a":"4663DE4","b":"1021000","o":"3642DE4","s":"_ZN5mongo9AutoGetDbC2EPNS_16OperationContextENS_10StringDataENS_8LockModeENS_6Date_tERKNSt3__13setIS3_NS6_4lessIS3_EENS6_9allocatorIS3_EEEE","C":"mongo::AutoGetDb::AutoGetDb(mongo::OperationContext*,
mongo::StringData, mongo::LockMode, mongo::Date_t,
std::__1::set<mongo::StringData, std::__1::less<mongo::StringData>,
std::__1::allocator<mongo::StringData> >
const&)","s+":"E4"},{"a":"30A8BA7","b":"1021000","o":"2087BA7","s":"_ZN5mongo11mongod_mainEiPPc","C":"mongo::mongod_main(int,
char**)","s+":"88C7"},{"a":"30A6980","b":"1021000","o":"2085980","s":"_ZN5mongo11mongod_mainEiPPc","C":"mongo::mongod_main(int,
char**)","s+":"66A0"},{"a":"30A06BC","b":"1021000","o":"207F6BC","s":"_ZN5mongo11mongod_mainEiPPc","C":"mongo::mongod_main(int,
char**)","s+":"3DC"},{"a":"30995E9","b":"1021000","o":"20785E9","s":"main","C":"unsigned
long","s+":"9"},{"a":"309939D","b":"1021000","o":"207839D","s":"_start","s+":"10D"},{"a":"806310008"}],"processInfo":{"mongodbVersion":"6.0.2","gitVersion":"nogitversion","compiledModules":[]}}},"tags":[]}
{"t":{"$date":"2022-11-09T06:14:08.432+00:00"},"s":"I", "c":"CONTROL",
"id":31445,
"ctx":"initandlisten","msg":"Frame","attr":{"frame":{"a":"6116D20","b":"1021000","o":"50F5D20","s":"_ZN5mongo15printStackTraceERNS_14StackTraceSinkE","C":"mongo::printStackTrace(mongo::StackTraceSink&)","s+":"130"}}}
{"t":{"$date":"2022-11-09T06:14:08.432+00:00"},"s":"I", "c":"CONTROL",
"id":31445,
"ctx":"initandlisten","msg":"Frame","attr":{"frame":{"a":"61135D4","b":"1021000","o":"50F25D4","s":"abruptQuitWithAddrSignal","C":"signed
char","s+":"184"}}}
{"t":{"$date":"2022-11-09T06:14:08.432+00:00"},"s":"I", "c":"CONTROL",
"id":31445,
"ctx":"initandlisten","msg":"Frame","attr":{"frame":{"a":"8072E958E","b":"8072CF000","o":"1A58E","s":"_pthread_sigmask","s+":"54E"}}}
{"t":{"$date":"2022-11-09T06:14:08.432+00:00"},"s":"I", "c":"CONTROL",
"id":31445,
"ctx":"initandlisten","msg":"Frame","attr":{"frame":{"a":"8072E8B3F","b":"8072CF000","o":"19B3F","s":"_pthread_setschedparam","s+":"82F"}}}
{"t":{"$date":"2022-11-09T06:14:08.432+00:00"},"s":"I", "c":"CONTROL",
"id":31445,
"ctx":"initandlisten","msg":"Frame","attr":{"frame":{"a":"7FFFFFFFF8A3"}}}
{"t":{"$date":"2022-11-09T06:14:08.432+00:00"},"s":"I", "c":"CONTROL",
"id":31445,
"ctx":"initandlisten","msg":"Frame","attr":{"frame":{"a":"4D6B84A","b":"1021000","o":"3D4A84A","s":"_ZN5mongo8LockHead27migratePartitionedLockHeadsEv","C":"mongo::LockHead::migratePartitionedLockHeads()","s+":"AA"}}}
{"t":{"$date":"2022-11-09T06:14:08.432+00:00"},"s":"I", "c":"CONTROL",
"id":31445,
"ctx":"initandlisten","msg":"Frame","attr":{"frame":{"a":"4D6C9F7","b":"1021000","o":"3D4B9F7","s":"_ZN5mongo11LockManager4lockENS_10ResourceIdEPNS_11LockRequestENS_8LockModeE","C":"mongo::LockManager::lock(mongo::ResourceId,
mongo::LockRequest*, mongo::LockMode)","s+":"1E7"}}}
{"t":{"$date":"2022-11-09T06:14:08.432+00:00"},"s":"I", "c":"CONTROL",
"id":31445,
"ctx":"initandlisten","msg":"Frame","attr":{"frame":{"a":"4D7AF81","b":"1021000","o":"3D59F81","s":"_ZN5mongo10LockerImpl10_lockBeginEPNS_16OperationContextENS_10ResourceIdENS_8LockModeE","C":"mongo::LockerImpl::_lockBegin(mongo::OperationContext*,
mongo::ResourceId, mongo::LockMode)","s+":"C91"}}}
{"t":{"$date":"2022-11-09T06:14:08.432+00:00"},"s":"I", "c":"CONTROL",
"id":31445,
"ctx":"initandlisten","msg":"Frame","attr":{"frame":{"a":"4D755BB","b":"1021000","o":"3D545BB","s":"_ZN5mongo10LockerImpl4lockEPNS_16OperationContextENS_10ResourceIdENS_8LockModeENS_6Date_tE","C":"mongo::LockerImpl::lock(mongo::OperationContext*,
mongo::ResourceId, mongo::LockMode, mongo::Date_t)","s+":"2B"}}}
{"t":{"$date":"2022-11-09T06:14:08.432+00:00"},"s":"I", "c":"CONTROL",
"id":31445,
"ctx":"initandlisten","msg":"Frame","attr":{"frame":{"a":"4D69FB9","b":"1021000","o":"3D48FB9","s":"_ZN5mongo4Lock6DBLockC2EPNS_16OperationContextENS_10StringDataENS_8LockModeENS_6Date_tEb","C":"mongo::Lock::DBLock::DBLock(mongo::OperationContext*,
mongo::StringData, mongo::LockMode, mongo::Date_t, bool)","s+":"E9"}}}
{"t":{"$date":"2022-11-09T06:14:08.432+00:00"},"s":"I", "c":"CONTROL",
"id":31445,
"ctx":"initandlisten","msg":"Frame","attr":{"frame":{"a":"4663DE4","b":"1021000","o":"3642DE4","s":"_ZN5mongo9AutoGetDbC2EPNS_16OperationContextENS_10StringDataENS_8LockModeENS_6Date_tERKNSt3__13setIS3_NS6_4lessIS3_EENS6_9allocatorIS3_EEEE","C":"mongo::AutoGetDb::AutoGetDb(mongo::OperationContext*,
mongo::StringData, mongo::LockMode, mongo::Date_t,
std::__1::set<mongo::StringData, std::__1::less<mongo::StringData>,
std::__1::allocator<mongo::StringData> > const&)","s+":"E4"}}}
{"t":{"$date":"2022-11-09T06:14:08.432+00:00"},"s":"I", "c":"CONTROL",
"id":31445,
"ctx":"initandlisten","msg":"Frame","attr":{"frame":{"a":"30A8BA7","b":"1021000","o":"2087BA7","s":"_ZN5mongo11mongod_mainEiPPc","C":"mongo::mongod_main(int,
char**)","s+":"88C7"}}}
{"t":{"$date":"2022-11-09T06:14:08.432+00:00"},"s":"I", "c":"CONTROL",
"id":31445,
"ctx":"initandlisten","msg":"Frame","attr":{"frame":{"a":"30A6980","b":"1021000","o":"2085980","s":"_ZN5mongo11mongod_mainEiPPc","C":"mongo::mongod_main(int,
char**)","s+":"66A0"}}}
{"t":{"$date":"2022-11-09T06:14:08.432+00:00"},"s":"I", "c":"CONTROL",
"id":31445,
"ctx":"initandlisten","msg":"Frame","attr":{"frame":{"a":"30A06BC","b":"1021000","o":"207F6BC","s":"_ZN5mongo11mongod_mainEiPPc","C":"mongo::mongod_main(int,
char**)","s+":"3DC"}}}
{"t":{"$date":"2022-11-09T06:14:08.432+00:00"},"s":"I", "c":"CONTROL",
"id":31445,
"ctx":"initandlisten","msg":"Frame","attr":{"frame":{"a":"30995E9","b":"1021000","o":"20785E9","s":"main","C":"unsigned
long","s+":"9"}}}
{"t":{"$date":"2022-11-09T06:14:08.432+00:00"},"s":"I", "c":"CONTROL",
"id":31445,
"ctx":"initandlisten","msg":"Frame","attr":{"frame":{"a":"309939D","b":"1021000","o":"207839D","s":"_start","s+":"10D"}}}
{"t":{"$date":"2022-11-09T06:14:08.432+00:00"},"s":"I", "c":"CONTROL",
"id":31445,
"ctx":"initandlisten","msg":"Frame","attr":{"frame":{"a":"806310008"}}}
Segmentation fault
I ran the command a second time after the initial failure and the mongo daemon
starts properly. Shutting down the daemon (after successful 2nd attempt) and
restarting it causes a segmentation fault.
I tried this again on a different machine (amd64) and it started the first time
if I used the -vvvvv flag. However, it failed to start again due to another
segmentation fault.
One other note, this issue also applies to arm64 as well. I compiled mongodb60
from the ports on my pine64 (RockPro). Both times they failed to start with a
segmentation fault.
When compiling on arm64 machines, I received multiple failures during
compilation. Usually error -9 or -1. I made a few modifications to get them to
compile:
1. sysctl vm.pageout_oom_seq=120
2. use an NVME drive as swap
3. turned on powerd using adaptive mode
I was only able to successfully compile on my pine64 (RockPro) after using a
NVME drive as swap. Swap space went up to about 12GB used at its peak. I was
not able to compile on my Raspberry Pi 4. I used a packaged version of the
build from the RockPro device to test on Raspberry Pi 4.
Please let me know if you need any additional information or have any
questions.
--
You are receiving this mail because:
You are the assignee for the bug.