[package - main-i386-default][biology/metaeuk] Failed for metaeuk-6_2 in build
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Date: Thu, 11 Jan 2024 03:26:57 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy17/data/main-i386-default/p2cc1ea473ed0_s8a3fafc821/logs/metaeuk-6_2.log
Build URL: https://pkg-status.freebsd.org/beefy17/build.html?mastername=main-i386-default&build=p2cc1ea473ed0_s8a3fafc821
Log:
=>> Building biology/metaeuk
build started at Thu Jan 11 03:22:25 UTC 2024
port directory: /usr/ports/biology/metaeuk
package name: metaeuk-6_2
building for: FreeBSD main-i386-default-job-06 15.0-CURRENT FreeBSD 15.0-CURRENT 1500008 i386
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1084 Jul 16 01:01 /usr/ports/biology/metaeuk/Makefile
Ports top last git commit: 2cc1ea473ed
Ports top unclean checkout: no
Port dir last git commit: 213c779e49b
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.0
Host OSVERSION: 1500006
Jail OSVERSION: 1500008
Job Id: 06
!!! Jail is newer than host. (Jail: 1500008, Host: 1500006) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
OSVERSION=1500008
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
UNAME_m=i386
UNAME_p=i386
UNAME_r=15.0-CURRENT
LOCALBASE=/usr/local
UNAME_v=FreeBSD 15.0-CURRENT 1500008
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.0
MASTERMNT=/usr/local/poudriere/data/.m/main-i386-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
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POUDRIERE_PKGNAME=poudriere-git-3.4.0
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for metaeuk-6_2:
NATIVE=off: Use native optimization (-march=native)
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/metaeuk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/metaeuk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/metaeuk/work/.cache HOME=/wrkdirs/usr/ports/biology/metaeuk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/metaeuk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/metaeuk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
NINJA_STATUS="[%p %s/%t] " PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/metaeuk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/metaeuk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/metaeuk/work/.cache HOME=/wrkdirs/usr/ports/biology/metaeuk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/metaeuk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/metaeuk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/metaeuk/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install
-s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
CMAKE_BUILD_TYPE="release" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/metaeuk" EXAMPLESDIR="share/examples/metaeuk" DATADIR="share/metaeuk" WWWDIR="www/metaeuk" ETCDIR="etc/metaeuk"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/metaeuk DOCSDIR=/usr/local/share/doc/metaeuk EXAMPLESDIR=/usr/local/share/examples/metaeuk WWWDIR=/usr/local/www/metaeuk ETCDIR=/usr/local/etc/metaeuk
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> metaeuk-6_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.9.pkg
[main-i386-default-job-06] Installing pkg-1.20.9...
[main-i386-default-job-06] Extracting pkg-1.20.9: .......... done
===> metaeuk-6_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of metaeuk-6_2
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by metaeuk-6_2 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by metaeuk-6_2 for building
=> SHA256 Checksum OK for soedinglab-metaeuk-6-a5d39d9_GH0.tar.gz.
=> SHA256 Checksum OK for soedinglab-metaeuk-regression-6404519_GH0.tar.gz.
=> SHA256 Checksum OK for soedinglab-MMseqs2-Regression-f69b185_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by metaeuk-6_2 for building
===> Extracting for metaeuk-6_2
=> SHA256 Checksum OK for soedinglab-metaeuk-6-a5d39d9_GH0.tar.gz.
=> SHA256 Checksum OK for soedinglab-metaeuk-regression-6404519_GH0.tar.gz.
=> SHA256 Checksum OK for soedinglab-MMseqs2-Regression-f69b185_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for metaeuk-6_2
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> metaeuk-6_2 depends on executable: xxd - not found
===> Installing existing package /packages/All/vim-9.1.0015_1.pkg
[main-i386-default-job-06] Installing vim-9.1.0015_1...
[main-i386-default-job-06] `-- Installing gettext-runtime-0.22.3...
[main-i386-default-job-06] | `-- Installing indexinfo-0.3.1...
<snip>
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8]
261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform
| ^
1 warning generated.
[ 84% 235/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/li
b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/summarizealis.cpp
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/summarizealis.cpp:7:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/Matcher.h:17:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/StripedSmithWaterman.h:47:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/EvalueComputation.h:7:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_alignment_evaluer.hpp:39:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8]
261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform
| ^
1 warning generated.
[ 85% 236/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/li
b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/summarizeheaders.cpp
[ 85% 237/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/li
b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/summarizeresult.cpp
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/summarizeresult.cpp:6:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/Matcher.h:17:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/StripedSmithWaterman.h:47:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/EvalueComputation.h:7:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_alignment_evaluer.hpp:39:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8]
261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform
| ^
1 warning generated.
[ 85% 238/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/li
b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/summarizetabs.cpp
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/summarizetabs.cpp:6:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/CompressedA3M.h:4:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/Matcher.h:17:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/StripedSmithWaterman.h:47:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/EvalueComputation.h:7:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_alignment_evaluer.hpp:39:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8]
261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform
| ^
1 warning generated.
[ 86% 239/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/li
b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/swapresults.cpp
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/swapresults.cpp:1:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/Matcher.h:17:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/StripedSmithWaterman.h:47:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/EvalueComputation.h:7:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_alignment_evaluer.hpp:39:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8]
261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform
| ^
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/swapresults.cpp:7:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/QueryMatcher.h:11:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/CacheFriendlyOperations.h:4:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/IndexTable.h:264:16: warning: variable 'emptyKmer' set but not used [-Wunused-but-set-variable]
264 | size_t emptyKmer = 0;
| ^
2 warnings generated.
[ 86% 240/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/li
b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/transitivealign.cpp
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/transitivealign.cpp:3:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/Matcher.h:17:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/StripedSmithWaterman.h:47:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/EvalueComputation.h:7:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_alignment_evaluer.hpp:39:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8]
261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform
| ^
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/transitivealign.cpp:9:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/Alignment.h:4:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/IndexReader.h:6:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/PrefilteringIndexReader.h:5:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/IndexTable.h:264:16: warning: variable 'emptyKmer' set but not used [-Wunused-but-set-variable]
264 | size_t emptyKmer = 0;
| ^
2 warnings generated.
[ 86% 241/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/li
b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/translateaa.cpp
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In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/translatenucs.cpp:1:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/Orf.h:6:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/Matcher.h:17:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/StripedSmithWaterman.h:47:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/EvalueComputation.h:7:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_alignment_evaluer.hpp:39:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8]
261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform
| ^
1 warning generated.
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In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/proteinaln2nucl.cpp:3:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/Matcher.h:17:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/StripedSmithWaterman.h:47:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/EvalueComputation.h:7:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_alignment_evaluer.hpp:39:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8]
261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform
| ^
1 warning generated.
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[ 91% 253/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/li
b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/Linclust.cpp
[ 91% 254/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/li
b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/EasySearch.cpp
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/EasySearch.cpp:3:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/PrefilteringIndexReader.h:5:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/IndexTable.h:264:16: warning: variable 'emptyKmer' set but not used [-Wunused-but-set-variable]
264 | size_t emptyKmer = 0;
| ^
1 warning generated.
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b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/EasyRbh.cpp
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/EasyRbh.cpp:3:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/PrefilteringIndexReader.h:5:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/IndexTable.h:264:16: warning: variable 'emptyKmer' set but not used [-Wunused-but-set-variable]
264 | size_t emptyKmer = 0;
| ^
1 warning generated.
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e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/EasyCluster.cpp
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b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/EasyLinclust.cpp
[ 93% 258/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/li
b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/Linsearch.cpp
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/Linsearch.cpp:6:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/PrefilteringIndexReader.h:5:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/IndexTable.h:264:16: warning: variable 'emptyKmer' set but not used [-Wunused-but-set-variable]
264 | size_t emptyKmer = 0;
| ^
1 warning generated.
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e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/Enrich.cpp
[ 93% 260/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/li
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e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/Map.cpp
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b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/Rbh.cpp
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b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/Search.cpp
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/Search.cpp:6:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/PrefilteringIndexReader.h:5:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/IndexTable.h:264:16: warning: variable 'emptyKmer' set but not used [-Wunused-but-set-variable]
264 | size_t emptyKmer = 0;
| ^
1 warning generated.
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In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/Taxonomy.cpp:6:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/PrefilteringIndexReader.h:5:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/IndexTable.h:264:16: warning: variable 'emptyKmer' set but not used [-Wunused-but-set-variable]
264 | size_t emptyKmer = 0;
| ^
1 warning generated.
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metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/metaeuk.dir/exonpredictor/resultspercontig.cpp.o -MF src/CMakeFiles/metaeuk.dir/exonpredictor/resultspercontig.cpp.o.d -o src/CMakeFiles/metaeuk.dir/exonpredictor/resultspercontig.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/src/exonpredictor/resultspercontig.cpp
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/src/exonpredictor/resultspercontig.cpp:3:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/Matcher.h:17:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/StripedSmithWaterman.h:47:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/EvalueComputation.h:7:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_alignment_evaluer.hpp:39:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8]
261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform
| ^
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/src/exonpredictor/resultspercontig.cpp:10:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/IndexReader.h:6:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/PrefilteringIndexReader.h:5:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/IndexTable.h:264:16: warning: variable 'emptyKmer' set but not used [-Wunused-but-set-variable]
264 | size_t emptyKmer = 0;
| ^
2 warnings generated.
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In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/src/exonpredictor/unitesetstofasta.cpp:8:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/Orf.h:6:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/Matcher.h:17:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/StripedSmithWaterman.h:47:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/EvalueComputation.h:7:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_alignment_evaluer.hpp:39:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8]
261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform
| ^
1 warning generated.
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metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/metaeuk.dir/workflow/TaxToContig.cpp.o -MF src/CMakeFiles/metaeuk.dir/workflow/TaxToContig.cpp.o.d -o src/CMakeFiles/metaeuk.dir/workflow/TaxToContig.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/src/workflow/TaxToContig.cpp
[ 99% 274/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrk
dirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/
metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/metaeuk.dir/metaeuk.cpp.o -MF src/CMakeFiles/metaeuk.dir/metaeuk.cpp.o.d -o src/CMakeFiles/metaeuk.dir/metaeuk.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/src/metaeuk.cpp
[100% 275/275] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp src/CMakeFiles/metaeuk.dir/exonpredictor/resultspercontig.cpp.o src/CMakeFiles/metaeuk.dir/exonpredictor/collectoptimalset.cpp.o src/CMakeFiles/metaeuk.dir/exonpredictor/reduceredundancy.cpp.o src/CMakeFiles/metaeuk.dir/exonpredictor/unitesetstofasta.cpp.o src/CMakeFiles/metaeuk.dir/exonpredictor/groupstoacc.cpp.o src/CMakeFiles/metaeuk.dir/workflow/PredictExons.cpp.o src/CMakeFiles/metaeuk.dir/workflow/EasyPredict.cpp.o src/CMakeFiles/metaeuk.dir/workflow/TaxToContig.cpp.o src/CMakeFiles/metaeuk.dir/metaeuk.cpp.o -o src/metaeuk lib/mmseqs/src/libmmseqs-framework.a src/version/libversion.a lib/mmseqs/lib/tinyexpr/libtinyexpr.a -lm lib/mmseqs/lib/zstd/buil
d/cmake/lib/libzstd.a lib/mmseqs/lib/microtar/libmicrotar.a -lz -lbz2 -lomp && :
FAILED: src/metaeuk
: && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp src/CMakeFiles/metaeuk.dir/exonpredictor/resultspercontig.cpp.o src/CMakeFiles/metaeuk.dir/exonpredictor/collectoptimalset.cpp.o src/CMakeFiles/metaeuk.dir/exonpredictor/reduceredundancy.cpp.o src/CMakeFiles/metaeuk.dir/exonpredictor/unitesetstofasta.cpp.o src/CMakeFiles/metaeuk.dir/exonpredictor/groupstoacc.cpp.o src/CMakeFiles/metaeuk.dir/workflow/PredictExons.cpp.o src/CMakeFiles/metaeuk.dir/workflow/EasyPredict.cpp.o src/CMakeFiles/metaeuk.dir/workflow/TaxToContig.cpp.o src/CMakeFiles/metaeuk.dir/metaeuk.cpp.o -o src/metaeuk lib/mmseqs/src/libmmseqs-framework.a src/version/libversion.a lib/mmseqs/lib/tinyexpr/libtinyexpr.a -lm lib/mmseqs/lib/zstd/build/cmake/lib/lib
zstd.a lib/mmseqs/lib/microtar/libmicrotar.a -lz -lbz2 -lomp && :
c++: warning: argument unused during compilation: '-stdlib=libc++' [-Wunused-command-line-argument]
ld: error: undefined symbol: roundevenf
>>> referenced by CSProfile.cpp
>>> CSProfile.cpp.o:(float* CSProfile::computeProfile<2>(unsigned char*, int, float*, float*, float, float, float)) in archive lib/mmseqs/src/libmmseqs-framework.a
>>> referenced by CSProfile.cpp
>>> CSProfile.cpp.o:(float* CSProfile::computeProfile<2>(unsigned char*, int, float*, float*, float, float, float)) in archive lib/mmseqs/src/libmmseqs-framework.a
>>> referenced by CSProfile.cpp
>>> CSProfile.cpp.o:(float* CSProfile::computeProfile<2>(unsigned char*, int, float*, float*, float, float, float)) in archive lib/mmseqs/src/libmmseqs-framework.a
>>> referenced 13 more times
c++: error: linker command failed with exit code 1 (use -v to see invocation)
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/metaeuk