From nobody Thu Jan 11 03:26:57 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4T9VTG5R6Pz55y12 for ; Thu, 11 Jan 2024 03:26:58 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4T9VTG42vyz4lfX for ; Thu, 11 Jan 2024 03:26:58 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1704943618; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=KBLiwTg0MLUDuDSzvXUIWMnuwxP4+289xdh+hvbFJ1w=; b=ekg1lUv1G38IeudzOyx59qBZ+fwv17iztRGjV1bVKqwmmq0dUPyQmKUT79uMeNmGkhfFK5 wwlvaBDmQH9OVrZSjN+ohqlgYVH8NPNrrLp46mXZfrqCBE57jpDq7KctXMkRzWgr26+wiQ kjnafO/l5xQjzkiK0wSb8q0dwKRDlaPslW46yzFgy+QJB+m6LKkAQXA/Fg5Qpx0QUBDBWs UyEpslWDbFRGM1sEKvsYivCicK51ZIdbC5dyQjA3wKL3v0mM338O0hUcuei+mHlnfTYkK+ GAfKHkrqlPvU9pdPeK+XjvHc1Rt4dpQ/r4GZItj+zqwn+ZQ607j+rWId3QyAWg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1704943618; a=rsa-sha256; cv=none; b=I42rVVXjEYnV9gEkUJAfUstaxE0GOvBdVwCUMua+IEOHLNr42DKRryGggiA7wcVxz+x152 ud0zoTRbjQS7nnmh/sfN9zM041JepIoukaU+o/8P9jeZNR6WgBLBwUE/PvKtCBjrYoqhgj dGbNzAmg3mEyMLezB3QoO4OjvpFVgHyJaersmwUiwfI16qavi8GcGfve4hTlJbS8i1qdS4 zs7m1EJMTiTWJvwep3YCD8h86kwmQ+5soMByA0bFRAxa3whQBjDVFVHFcFQzqv/3dUKqK6 loK9DireaIyp4UdnJdI5I70w1AISucspI3fiJ6955Wtdg7mgJ5uhGefANO9+DA== Received: from beefy17.nyi.freebsd.org (beefy17.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:20]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4T9VTF3yJgz12j3 for ; Thu, 11 Jan 2024 03:26:57 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 3ec2 by beefy17.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy17.nyi.freebsd.org); Thu, 11 Jan 2024 03:26:57 +0000 To: yuri@FreeBSD.org Subject: [package - main-i386-default][biology/metaeuk] Failed for metaeuk-6_2 in build Cc: pkg-fallout@FreeBSD.org Date: Thu, 11 Jan 2024 03:26:57 +0000 Message-Id: <659f6001.3ec2.660625ee@beefy17.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy17/data/main-i386-default/p2cc1ea473ed0_s8a3fafc821/logs/metaeuk-6_2.log Build URL: https://pkg-status.freebsd.org/beefy17/build.html?mastername=main-i386-default&build=p2cc1ea473ed0_s8a3fafc821 Log: =>> Building biology/metaeuk build started at Thu Jan 11 03:22:25 UTC 2024 port directory: /usr/ports/biology/metaeuk package name: metaeuk-6_2 building for: FreeBSD main-i386-default-job-06 15.0-CURRENT FreeBSD 15.0-CURRENT 1500008 i386 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1084 Jul 16 01:01 /usr/ports/biology/metaeuk/Makefile Ports top last git commit: 2cc1ea473ed Ports top unclean checkout: no Port dir last git commit: 213c779e49b Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.0 Host OSVERSION: 1500006 Jail OSVERSION: 1500008 Job Id: 06 !!! Jail is newer than host. (Jail: 1500008, Host: 1500006) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 OSVERSION=1500008 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 UNAME_m=i386 UNAME_p=i386 UNAME_r=15.0-CURRENT LOCALBASE=/usr/local UNAME_v=FreeBSD 15.0-CURRENT 1500008 USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.0 MASTERMNT=/usr/local/poudriere/data/.m/main-i386-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-i386-default/06/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=main-i386-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.0 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for metaeuk-6_2: NATIVE=off: Use native optimization (-march=native) ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/metaeuk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/metaeuk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/metaeuk/work/.cache HOME=/wrkdirs/usr/ports/biology/metaeuk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/metaeuk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/metaeuk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/metaeuk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/metaeuk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/metaeuk/work/.cache HOME=/wrkdirs/usr/ports/biology/metaeuk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/metaeuk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/metaeuk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/metaeuk/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/metaeuk" EXAMPLESDIR="share/examples/metaeuk" DATADIR="share/metaeuk" WWWDIR="www/metaeuk" ETCDIR="etc/metaeuk" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/metaeuk DOCSDIR=/usr/local/share/doc/metaeuk EXAMPLESDIR=/usr/local/share/examples/metaeuk WWWDIR=/usr/local/www/metaeuk ETCDIR=/usr/local/etc/metaeuk --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> metaeuk-6_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9.pkg [main-i386-default-job-06] Installing pkg-1.20.9... [main-i386-default-job-06] Extracting pkg-1.20.9: .......... done ===> metaeuk-6_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of metaeuk-6_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by metaeuk-6_2 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by metaeuk-6_2 for building => SHA256 Checksum OK for soedinglab-metaeuk-6-a5d39d9_GH0.tar.gz. => SHA256 Checksum OK for soedinglab-metaeuk-regression-6404519_GH0.tar.gz. => SHA256 Checksum OK for soedinglab-MMseqs2-Regression-f69b185_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by metaeuk-6_2 for building ===> Extracting for metaeuk-6_2 => SHA256 Checksum OK for soedinglab-metaeuk-6-a5d39d9_GH0.tar.gz. => SHA256 Checksum OK for soedinglab-metaeuk-regression-6404519_GH0.tar.gz. => SHA256 Checksum OK for soedinglab-MMseqs2-Regression-f69b185_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for metaeuk-6_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> metaeuk-6_2 depends on executable: xxd - not found ===> Installing existing package /packages/All/vim-9.1.0015_1.pkg [main-i386-default-job-06] Installing vim-9.1.0015_1... [main-i386-default-job-06] `-- Installing gettext-runtime-0.22.3... [main-i386-default-job-06] | `-- Installing indexinfo-0.3.1... /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8] 261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform | ^ 1 warning generated. [ 84% 235/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/li b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/summarizealis.cpp In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/summarizealis.cpp:7: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/Matcher.h:17: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/StripedSmithWaterman.h:47: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/EvalueComputation.h:7: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_alignment_evaluer.hpp:39: /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8] 261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform | ^ 1 warning generated. [ 85% 236/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/li b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/summarizeheaders.cpp [ 85% 237/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar 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-I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/summarizeresult.cpp In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/summarizeresult.cpp:6: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/Matcher.h:17: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/StripedSmithWaterman.h:47: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/EvalueComputation.h:7: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_alignment_evaluer.hpp:39: /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8] 261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform | ^ 1 warning generated. [ 85% 238/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/li b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/summarizetabs.cpp In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/summarizetabs.cpp:6: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/CompressedA3M.h:4: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/Matcher.h:17: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/StripedSmithWaterman.h:47: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/EvalueComputation.h:7: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_alignment_evaluer.hpp:39: /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8] 261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform | ^ 1 warning generated. [ 86% 239/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/li b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/swapresults.cpp In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/swapresults.cpp:1: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/Matcher.h:17: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/StripedSmithWaterman.h:47: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/EvalueComputation.h:7: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_alignment_evaluer.hpp:39: /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8] 261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform | ^ In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/swapresults.cpp:7: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/QueryMatcher.h:11: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/CacheFriendlyOperations.h:4: /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/IndexTable.h:264:16: warning: variable 'emptyKmer' set but not used [-Wunused-but-set-variable] 264 | size_t emptyKmer = 0; | ^ 2 warnings generated. [ 86% 240/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/li b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/transitivealign.cpp In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/transitivealign.cpp:3: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/Matcher.h:17: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/StripedSmithWaterman.h:47: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/EvalueComputation.h:7: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_alignment_evaluer.hpp:39: /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8] 261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform | ^ In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/transitivealign.cpp:9: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/Alignment.h:4: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/IndexReader.h:6: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/PrefilteringIndexReader.h:5: /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/IndexTable.h:264:16: warning: variable 'emptyKmer' set but not used [-Wunused-but-set-variable] 264 | size_t emptyKmer = 0; | ^ 2 warnings generated. [ 86% 241/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/li b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/translateaa.cpp [ 87% 242/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/li b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/translatenucs.cpp In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util/translatenucs.cpp:1: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/Orf.h:6: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/Matcher.h:17: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/StripedSmithWaterman.h:47: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/EvalueComputation.h:7: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_alignment_evaluer.hpp:39: /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8] 261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform | ^ 1 warning generated. 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file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/StripedSmithWaterman.h:47: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/EvalueComputation.h:7: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_alignment_evaluer.hpp:39: /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8] 261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform | ^ 1 warning generated. 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/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/EasySearch.cpp In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/EasySearch.cpp:3: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/PrefilteringIndexReader.h:5: /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/IndexTable.h:264:16: warning: variable 'emptyKmer' set but not used [-Wunused-but-set-variable] 264 | size_t emptyKmer = 0; | ^ 1 warning generated. [ 92% 255/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/li b/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/EasyRbh.cpp In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/EasyRbh.cpp:3: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/PrefilteringIndexReader.h:5: /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/IndexTable.h:264:16: warning: variable 'emptyKmer' set but not used [-Wunused-but-set-variable] 264 | size_t emptyKmer = 0; | ^ 1 warning generated. 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-fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/EasyCluster.cpp [ 92% 257/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar 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-I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/EasyLinclust.cpp [ 93% 258/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd 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/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/Linsearch.cpp In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/Linsearch.cpp:6: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/PrefilteringIndexReader.h:5: /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/IndexTable.h:264:16: warning: variable 'emptyKmer' set but not used [-Wunused-but-set-variable] 264 | size_t emptyKmer = 0; | ^ 1 warning generated. 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-fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/Enrich.cpp [ 93% 260/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar 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-I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/Map.cpp [ 94% 261/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp 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-I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/Rbh.cpp [ 94% 262/275] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip e -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/Search.cpp In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/workflow/Search.cpp:6: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/PrefilteringIndexReader.h:5: /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/IndexTable.h:264:16: warning: variable 'emptyKmer' set but not used [-Wunused-but-set-variable] 264 | size_t emptyKmer = 0; | ^ 1 warning generated. 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src/CMakeFiles/metaeuk.dir/exonpredictor/resultspercontig.cpp.o.d -o src/CMakeFiles/metaeuk.dir/exonpredictor/resultspercontig.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/src/exonpredictor/resultspercontig.cpp In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/src/exonpredictor/resultspercontig.cpp:3: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/Matcher.h:17: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/StripedSmithWaterman.h:47: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/EvalueComputation.h:7: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_alignment_evaluer.hpp:39: /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8] 261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform | ^ In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/src/exonpredictor/resultspercontig.cpp:10: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/IndexReader.h:6: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/PrefilteringIndexReader.h:5: /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering/IndexTable.h:264:16: warning: variable 'emptyKmer' set but not used [-Wunused-but-set-variable] 264 | size_t emptyKmer = 0; | ^ 2 warnings generated. 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src/CMakeFiles/metaeuk.dir/exonpredictor/unitesetstofasta.cpp.o.d -o src/CMakeFiles/metaeuk.dir/exonpredictor/unitesetstofasta.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/src/exonpredictor/unitesetstofasta.cpp In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/src/exonpredictor/unitesetstofasta.cpp:8: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/Orf.h:6: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/Matcher.h:17: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/StripedSmithWaterman.h:47: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/EvalueComputation.h:7: In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_alignment_evaluer.hpp:39: /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp/sls_pvalues.hpp:261:95: warning: invalid UTF-8 in comment [-Winvalid-utf8] 261 | static inline double standard_normal()//generates standard normal random value using the Box<96>Muller transform | ^ 1 warning generated. 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-I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/metaeuk.dir/metaeuk.cpp.o -MF src/CMakeFiles/metaeuk.dir/metaeuk.cpp.o.d -o src/CMakeFiles/metaeuk.dir/metaeuk.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/src/metaeuk.cpp [100% 275/275] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp src/CMakeFiles/metaeuk.dir/exonpredictor/resultspercontig.cpp.o src/CMakeFiles/metaeuk.dir/exonpredictor/collectoptimalset.cpp.o src/CMakeFiles/metaeuk.dir/exonpredictor/reduceredundancy.cpp.o src/CMakeFiles/metaeuk.dir/exonpredictor/unitesetstofasta.cpp.o src/CMakeFiles/metaeuk.dir/exonpredictor/groupstoacc.cpp.o src/CMakeFiles/metaeuk.dir/workflow/PredictExons.cpp.o src/CMakeFiles/metaeuk.dir/workflow/EasyPredict.cpp.o src/CMakeFiles/metaeuk.dir/workflow/TaxToContig.cpp.o src/CMakeFiles/metaeuk.dir/metaeuk.cpp.o -o src/metaeuk lib/mmseqs/src/libmmseqs-framework.a src/version/libversion.a lib/mmseqs/lib/tinyexpr/libtinyexpr.a -lm lib/mmseqs/lib/zstd/buil d/cmake/lib/libzstd.a lib/mmseqs/lib/microtar/libmicrotar.a -lz -lbz2 -lomp && : FAILED: src/metaeuk : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp src/CMakeFiles/metaeuk.dir/exonpredictor/resultspercontig.cpp.o src/CMakeFiles/metaeuk.dir/exonpredictor/collectoptimalset.cpp.o src/CMakeFiles/metaeuk.dir/exonpredictor/reduceredundancy.cpp.o src/CMakeFiles/metaeuk.dir/exonpredictor/unitesetstofasta.cpp.o src/CMakeFiles/metaeuk.dir/exonpredictor/groupstoacc.cpp.o src/CMakeFiles/metaeuk.dir/workflow/PredictExons.cpp.o src/CMakeFiles/metaeuk.dir/workflow/EasyPredict.cpp.o src/CMakeFiles/metaeuk.dir/workflow/TaxToContig.cpp.o src/CMakeFiles/metaeuk.dir/metaeuk.cpp.o -o src/metaeuk lib/mmseqs/src/libmmseqs-framework.a src/version/libversion.a lib/mmseqs/lib/tinyexpr/libtinyexpr.a -lm lib/mmseqs/lib/zstd/build/cmake/lib/lib zstd.a lib/mmseqs/lib/microtar/libmicrotar.a -lz -lbz2 -lomp && : c++: warning: argument unused during compilation: '-stdlib=libc++' [-Wunused-command-line-argument] ld: error: undefined symbol: roundevenf >>> referenced by CSProfile.cpp >>> CSProfile.cpp.o:(float* CSProfile::computeProfile<2>(unsigned char*, int, float*, float*, float, float, float)) in archive lib/mmseqs/src/libmmseqs-framework.a >>> referenced by CSProfile.cpp >>> CSProfile.cpp.o:(float* CSProfile::computeProfile<2>(unsigned char*, int, float*, float*, float, float, float)) in archive lib/mmseqs/src/libmmseqs-framework.a >>> referenced by CSProfile.cpp >>> CSProfile.cpp.o:(float* CSProfile::computeProfile<2>(unsigned char*, int, float*, float*, float, float, float)) in archive lib/mmseqs/src/libmmseqs-framework.a >>> referenced 13 more times c++: error: linker command failed with exit code 1 (use -v to see invocation) ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/metaeuk