[package - 123i386-default][science/pnetcdf] Failed for pnetcdf-1.12.3 in configure
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Date: Tue, 19 Jul 2022 23:45:26 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet@FreeBSD.org
Log URL: http://beefy5.nyi.freebsd.org/data/123i386-default/a51002eeb3d0/logs/pnetcdf-1.12.3.log
Build URL: http://beefy5.nyi.freebsd.org/build.html?mastername=123i386-default&build=a51002eeb3d0
Log:
=>> Building science/pnetcdf
build started at Tue Jul 19 23:44:52 UTC 2022
port directory: /usr/ports/science/pnetcdf
package name: pnetcdf-1.12.3
building for: FreeBSD 123i386-default-job-09 12.3-RELEASE-p5 FreeBSD 12.3-RELEASE-p5 i386
maintained by: sunpoet@FreeBSD.org
Makefile ident:
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===> The following configuration options are available for pnetcdf-1.12.3:
====> MPI (Message Passing Interface) support: you have to select exactly one of them
OPENMPI=on: Parallel processing support via Open MPI
MPICH=off: Parallel processing support via MPICH 3
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
sunpoet@FreeBSD.org
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--End CONFIGURE_ARGS--
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--End PLIST_SUB--
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=======================<phase: check-sanity >============================
===========================================================================
=======================<phase: pkg-depends >============================
===> pnetcdf-1.12.3 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.18.3.pkg
[123i386-default-job-09] Installing pkg-1.18.3...
[123i386-default-job-09] Extracting pkg-1.18.3: .......... done
===> pnetcdf-1.12.3 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of pnetcdf-1.12.3
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
=> pnetcdf-1.12.3.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://parallel-netcdf.github.io/Release/pnetcdf-1.12.3.tar.gz
pnetcdf-1.12.3.tar.gz 2258 kB 26 MBps 00s
===> Fetching all distfiles required by pnetcdf-1.12.3 for building
===========================================================================
=======================<phase: checksum >============================
===> Fetching all distfiles required by pnetcdf-1.12.3 for building
=> SHA256 Checksum OK for pnetcdf-1.12.3.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> Fetching all distfiles required by pnetcdf-1.12.3 for building
===> Extracting for pnetcdf-1.12.3
=> SHA256 Checksum OK for pnetcdf-1.12.3.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for pnetcdf-1.12.3
===> Applying FreeBSD patches for pnetcdf-1.12.3 from /usr/ports/science/pnetcdf/files
===========================================================================
=======================<phase: build-depends >============================
===> pnetcdf-1.12.3 depends on executable: gfortran11 - not found
===> Installing existing package /packages/All/gcc11-11.3.0.pkg
[123i386-default-job-09] Installing gcc11-11.3.0...
[123i386-default-job-09] `-- Installing binutils-2.37_2,1...
[123i386-default-job-09] | `-- Installing gettext-runtime-0.21...
[123i386-default-job-09] | | `-- Installing indexinfo-0.3.1...
[123i386-default-job-09] | | `-- Extracting indexinfo-0.3.1: .... done
[123i386-default-job-09] | `-- Extracting gettext-runtime-0.21: .......... done
[123i386-default-job-09] `-- Extracting binutils-2.37_2,1: .......... done
[123i386-default-job-09] `-- Installing gmp-6.2.1...
[123i386-default-job-09] `-- Extracting gmp-6.2.1: .......... done
<snip>
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checking for m4... m4
checking m4 additional flags... none needed
checking for stdbool.h that conforms to C99... (cached) yes
checking for _Bool... (cached) yes
checking for inline... inline
checking for IEEE floating point format... yes
checking whether strdup is declared... (cached) yes
checking for strdup... (cached) yes
checking whether strerror is declared... yes
checking for strerror... (cached) yes
checking whether access is declared... yes
checking for access... yes
checking whether truncate is declared... yes
checking for truncate... (cached) yes
checking whether unlink is declared... (cached) yes
checking for unlink... (cached) yes
checking whether strcasecmp is declared... yes
checking for strcasecmp... (cached) yes
checking for search.h... (cached) yes
checking whether tsearch is declared... yes
checking for tsearch... (cached) yes
checking whether tdelete is declared... yes
checking for tdelete... yes
checking size of MPI_Offset... 4
configure: error:
-----------------------------------------------------------------------
Building of PnetCDF cannot continue due to the size of MPI_Offset
being less than 8 bytes. Please use an MPI library that supports
large files. Abort.
-----------------------------------------------------------------------
===> Script "configure" failed unexpectedly.
Please report the problem to sunpoet@FreeBSD.org [maintainer] and attach the
"/wrkdirs/usr/ports/science/pnetcdf/work/pnetcdf-1.12.3/config.log" including
the output of the failure of your make command. Also, it might be a good idea
to provide an overview of all packages installed on your system (e.g. a
/usr/local/sbin/pkg-static info -g -Ea).
*** Error code 1
Stop.
make: stopped in /usr/ports/science/pnetcdf