git: 5836db4f6725 - main - biology/ncbi-blast+: Update to 2.14.0
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Date: Sat, 27 May 2023 01:25:24 UTC
The branch main has been updated by jwb:
URL: https://cgit.FreeBSD.org/ports/commit/?id=5836db4f6725afbc5e46953922685504675c37e5
commit 5836db4f6725afbc5e46953922685504675c37e5
Author: Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2023-05-27 01:22:36 +0000
Commit: Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2023-05-27 01:25:23 +0000
biology/ncbi-blast+: Update to 2.14.0
A few bug fixes, enhancements, and performance improvements
Changes: https://www.ncbi.nlm.nih.gov/books/NBK131777/
---
biology/ncbi-blast+/Makefile | 9 +-
biology/ncbi-blast+/distinfo | 6 +-
...jtools_blast_seqdb__reader_test_seqdb__perf.cpp | 18 +-
biology/ncbi-blast+/pkg-plist | 917 ++++++++++++++++++---
4 files changed, 827 insertions(+), 123 deletions(-)
diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile
index b24c056c6b8a..55de83407c4b 100644
--- a/biology/ncbi-blast+/Makefile
+++ b/biology/ncbi-blast+/Makefile
@@ -1,6 +1,5 @@
PORTNAME= ncbi-blast+
-DISTVERSION= 2.12.0
-PORTREVISION= 10
+DISTVERSION= 2.14.0
CATEGORIES= biology perl5 python
MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \
https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/
@@ -8,7 +7,7 @@ DISTNAME= ncbi-blast-${PORTVERSION}+-src
MAINTAINER= jwb@FreeBSD.org
COMMENT= NCBI implementation of Basic Local Alignment Search Tool
-WWW= http://blast.ncbi.nlm.nih.gov
+WWW= https://blast.ncbi.nlm.nih.gov
LICENSE= PD
LICENSE_FILE= ${WRKSRC}/scripts/projects/blast/LICENSE
@@ -29,7 +28,9 @@ LIB_DEPENDS= libpcre.so:devel/pcre \
libsqlite3.so:databases/sqlite3 \
libuv.so:devel/libuv \
libnghttp2.so:www/libnghttp2 \
- libgrpc.so:devel/grpc
+ libgrpc.so:devel/grpc \
+ libzstd.so:archivers/zstd \
+ libdw.so:devel/elfutils
RUN_DEPENDS= p5-List-MoreUtils>=0:lang/p5-List-MoreUtils \
p5-JSON>=0:converters/p5-JSON
diff --git a/biology/ncbi-blast+/distinfo b/biology/ncbi-blast+/distinfo
index 94e598262859..a3b7142fbb2e 100644
--- a/biology/ncbi-blast+/distinfo
+++ b/biology/ncbi-blast+/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1625068343
-SHA256 (ncbi-blast-2.12.0+-src.tar.gz) = fda3c9c9d488cad6c1880a98a236d842bcf3610e3e702af61f7a48cf0a714b88
-SIZE (ncbi-blast-2.12.0+-src.tar.gz) = 58245348
+TIMESTAMP = 1685108714
+SHA256 (ncbi-blast-2.14.0+-src.tar.gz) = bf477f1b0c3b82f0b7a7094bf003a9a83e37e3b0716c1df799060c4feab17500
+SIZE (ncbi-blast-2.14.0+-src.tar.gz) = 28200227
diff --git a/biology/ncbi-blast+/files/patch-src_objtools_blast_seqdb__reader_test_seqdb__perf.cpp b/biology/ncbi-blast+/files/patch-src_objtools_blast_seqdb__reader_test_seqdb__perf.cpp
index f15e73c87671..3ea6f61a5619 100644
--- a/biology/ncbi-blast+/files/patch-src_objtools_blast_seqdb__reader_test_seqdb__perf.cpp
+++ b/biology/ncbi-blast+/files/patch-src_objtools_blast_seqdb__reader_test_seqdb__perf.cpp
@@ -1,21 +1,21 @@
---- src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp.orig 2021-01-10 02:28:53 UTC
+--- src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp.orig 2021-10-14 12:36:57 UTC
+++ src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp
-@@ -137,7 +137,8 @@ CSeqDBPerfApp::x_ScanDatabase()
- }
+@@ -138,7 +138,8 @@ CSeqDBPerfApp::x_ScanDatabase()
LOG_POST(Info << "Will go over " << oids2iterate.size() << " sequences");
--#if defined(NCBI_COMPILER_GCC) && (NCBI_COMPILER_VERSION >= 900)
-+#if defined(NCBI_COMPILER_GCC) && (NCBI_COMPILER_VERSION >= 900) || \
+ #if (defined(NCBI_COMPILER_GCC) && (NCBI_COMPILER_VERSION >= 900)) || \
+- (defined(NCBI_COMPILER_ICC) && (NCBI_COMPILER_VERSION >= 2100))
++ (defined(NCBI_COMPILER_ICC) && (NCBI_COMPILER_VERSION >= 2100)) || \
+ defined(NCBI_COMPILER_LLVM_CLANG)
#pragma omp parallel default(none) num_threads(m_DbHandles.size()) \
shared(oids2iterate,kScanUncompressed) if(m_DbHandles.size() > 1)
#else
-@@ -208,7 +209,8 @@ CSeqDBPerfApp::x_InitApplicationData()
-
+@@ -210,7 +211,8 @@ CSeqDBPerfApp::x_InitApplicationData()
if (args["multi_threaded_creation"]) {
--#if defined(NCBI_COMPILER_GCC) && (NCBI_COMPILER_VERSION >= 900)
-+#if defined(NCBI_COMPILER_GCC) && (NCBI_COMPILER_VERSION >= 900) || \
+ #if (defined(NCBI_COMPILER_GCC) && (NCBI_COMPILER_VERSION >= 900)) || \
+- (defined(NCBI_COMPILER_ICC) && (NCBI_COMPILER_VERSION >= 2100))
++ (defined(NCBI_COMPILER_ICC) && (NCBI_COMPILER_VERSION >= 2100)) ||
+ defined(NCBI_COMPILER_LLVM_CLANG)
#pragma omp parallel default(none) shared(kDbName, kNumThreads, kSeqType) num_threads(kNumThreads)
#else
diff --git a/biology/ncbi-blast+/pkg-plist b/biology/ncbi-blast+/pkg-plist
index db5c2ec247a9..a432cd175519 100644
--- a/biology/ncbi-blast+/pkg-plist
+++ b/biology/ncbi-blast+/pkg-plist
@@ -20,6 +20,7 @@ bin/get_species_taxids.sh
bin/legacy_blast.pl
bin/lmdbxx_sample
bin/makeblastdb
+bin/makeclusterdb
bin/makembindex
bin/makeprofiledb
bin/project_tree_builder
@@ -30,7 +31,6 @@ bin/run_with_lock
bin/seedtop
bin/segmasker
bin/seqdb_demo
-bin/seqdb_perf
bin/tblastn
bin/tblastx
bin/update_blastdb.pl
@@ -211,6 +211,12 @@ include/ncbi-tools++/algo/blast/proteinkmer/blastkmerresults.hpp
include/ncbi-tools++/algo/blast/proteinkmer/blastkmerutils.hpp
include/ncbi-tools++/algo/blast/proteinkmer/kblastapi.hpp
include/ncbi-tools++/algo/blast/proteinkmer/mhfile.hpp
+include/ncbi-tools++/algo/blast/vdb/blastn_vdb_args.hpp
+include/ncbi-tools++/algo/blast/vdb/seqsrc_vdb.h
+include/ncbi-tools++/algo/blast/vdb/tblastn_vdb_args.hpp
+include/ncbi-tools++/algo/blast/vdb/vdb2blast_util.hpp
+include/ncbi-tools++/algo/blast/vdb/vdbalias.hpp
+include/ncbi-tools++/algo/blast/vdb/vdbblast_local.hpp
include/ncbi-tools++/algo/dustmask/sdust.tex
include/ncbi-tools++/algo/dustmask/symdust.hpp
include/ncbi-tools++/algo/segmask/segmask.hpp
@@ -257,6 +263,7 @@ include/ncbi-tools++/cgi/cgiapp.hpp
include/ncbi-tools++/cgi/cgiapp_cached.hpp
include/ncbi-tools++/cgi/cgictx.hpp
include/ncbi-tools++/cgi/error_codes.hpp
+include/ncbi-tools++/cgi/fcgiapp_mt.hpp
include/ncbi-tools++/cgi/impl/cgi_entry_reader.hpp
include/ncbi-tools++/cgi/ncbicgi.hpp
include/ncbi-tools++/cgi/ncbicgir.hpp
@@ -277,6 +284,7 @@ include/ncbi-tools++/common/ncbi_package_ver.h
include/ncbi-tools++/common/ncbi_pch_impl.hpp
include/ncbi-tools++/common/ncbi_revision.h
include/ncbi-tools++/common/ncbi_sanitizers.h
+include/ncbi-tools++/common/ncbi_sc_version.h
include/ncbi-tools++/common/ncbi_skew_guard.h
include/ncbi-tools++/common/ncbi_source_ver.cmake_nodep
include/ncbi-tools++/common/ncbi_source_ver.h
@@ -549,40 +557,10 @@ include/ncbi-tools++/html/page.hpp
include/ncbi-tools++/html/pager.hpp
include/ncbi-tools++/html/selection.hpp
include/ncbi-tools++/html/writer_htmlenc.hpp
+include/ncbi-tools++/misc/drmaa2.hpp
include/ncbi-tools++/misc/error_codes.hpp
include/ncbi-tools++/misc/jsonwrapp/jsonwrapp.hpp
-include/ncbi-tools++/misc/jsonwrapp/jsonwrapp10.hpp
include/ncbi-tools++/misc/jsonwrapp/jsonwrapp11.hpp
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/__NCBI_read_me.txt
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/allocators.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/document.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/encodedstream.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/encodings.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/error/en.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/error/error.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/filereadstream.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/filewritestream.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/biginteger.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/diyfp.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/dtoa.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/ieee754.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/itoa.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/meta.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/pow10.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/stack.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/strfunc.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/strtod.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/license.txt
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/memorybuffer.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/memorystream.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/msinttypes/inttypes.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/msinttypes/stdint.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/pointer.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/prettywriter.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/rapidjson.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/reader.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/stringbuffer.h
-include/ncbi-tools++/misc/jsonwrapp/rapidjson10/writer.h
include/ncbi-tools++/misc/jsonwrapp/rapidjson11/__NCBI_read_me.txt
include/ncbi-tools++/misc/jsonwrapp/rapidjson11/allocators.h
include/ncbi-tools++/misc/jsonwrapp/rapidjson11/document.h
@@ -625,13 +603,11 @@ include/ncbi-tools++/ncbi_random_macro.h
include/ncbi-tools++/ncbi_source_ver.h
include/ncbi-tools++/ncbiconf.h
include/ncbi-tools++/ncbiconf_unix.h
-include/ncbi-tools++/objects/access/.cvsignore
include/ncbi-tools++/objects/access/.gitignore
include/ncbi-tools++/objects/access/Link_set.hpp
include/ncbi-tools++/objects/access/Link_set_.hpp
include/ncbi-tools++/objects/access/NCBI_Access_module.hpp
include/ncbi-tools++/objects/access/access__.hpp
-include/ncbi-tools++/objects/biblio/.cvsignore
include/ncbi-tools++/objects/biblio/.gitignore
include/ncbi-tools++/objects/biblio/Affil.hpp
include/ncbi-tools++/objects/biblio/Affil_.hpp
@@ -695,7 +671,6 @@ include/ncbi-tools++/objects/biblio/Title_.hpp
include/ncbi-tools++/objects/biblio/biblio__.hpp
include/ncbi-tools++/objects/biblio/biblio_macros.hpp
include/ncbi-tools++/objects/biblio/citation_base.hpp
-include/ncbi-tools++/objects/biotree/.cvsignore
include/ncbi-tools++/objects/biotree/.gitignore
include/ncbi-tools++/objects/biotree/BioTreeContainer.hpp
include/ncbi-tools++/objects/biotree/BioTreeContainer_.hpp
@@ -715,7 +690,6 @@ include/ncbi-tools++/objects/biotree/NodeSet.hpp
include/ncbi-tools++/objects/biotree/NodeSet_.hpp
include/ncbi-tools++/objects/biotree/Node_.hpp
include/ncbi-tools++/objects/biotree/biotree__.hpp
-include/ncbi-tools++/objects/blast/.cvsignore
include/ncbi-tools++/objects/blast/.gitignore
include/ncbi-tools++/objects/blast/Blas_get_searc_resul_reply.hpp
include/ncbi-tools++/objects/blast/Blas_get_searc_resul_reply_.hpp
@@ -846,10 +820,11 @@ include/ncbi-tools++/objects/blast/blast__.hpp
include/ncbi-tools++/objects/blast/blastclient.hpp
include/ncbi-tools++/objects/blast/blastclient_.hpp
include/ncbi-tools++/objects/blast/names.hpp
-include/ncbi-tools++/objects/blastdb/.cvsignore
include/ncbi-tools++/objects/blastdb/.gitignore
include/ncbi-tools++/objects/blastdb/Blast_db_mask_info.hpp
include/ncbi-tools++/objects/blastdb/Blast_db_mask_info_.hpp
+include/ncbi-tools++/objects/blastdb/Blast_db_metadata.hpp
+include/ncbi-tools++/objects/blastdb/Blast_db_metadata_.hpp
include/ncbi-tools++/objects/blastdb/Blast_def_line.hpp
include/ncbi-tools++/objects/blastdb/Blast_def_line_.hpp
include/ncbi-tools++/objects/blastdb/Blast_def_line_set.hpp
@@ -861,7 +836,6 @@ include/ncbi-tools++/objects/blastdb/Blast_mask_list_.hpp
include/ncbi-tools++/objects/blastdb/NCBI_BlastDL_module.hpp
include/ncbi-tools++/objects/blastdb/blastdb__.hpp
include/ncbi-tools++/objects/blastdb/defline_extra.hpp
-include/ncbi-tools++/objects/blastxml/.cvsignore
include/ncbi-tools++/objects/blastxml/.gitignore
include/ncbi-tools++/objects/blastxml/BlastOutput.hpp
include/ncbi-tools++/objects/blastxml/BlastOutput_.hpp
@@ -877,7 +851,6 @@ include/ncbi-tools++/objects/blastxml/Parameters_.hpp
include/ncbi-tools++/objects/blastxml/Statistics.hpp
include/ncbi-tools++/objects/blastxml/Statistics_.hpp
include/ncbi-tools++/objects/blastxml/blastxml__.hpp
-include/ncbi-tools++/objects/blastxml2/.cvsignore
include/ncbi-tools++/objects/blastxml2/.gitignore
include/ncbi-tools++/objects/blastxml2/BlastOutput2.hpp
include/ncbi-tools++/objects/blastxml2/BlastOutput2_.hpp
@@ -909,7 +882,6 @@ include/ncbi-tools++/objects/blastxml2/Statistics_.hpp
include/ncbi-tools++/objects/blastxml2/Target.hpp
include/ncbi-tools++/objects/blastxml2/Target_.hpp
include/ncbi-tools++/objects/blastxml2/blastxml2__.hpp
-include/ncbi-tools++/objects/cdd/.cvsignore
include/ncbi-tools++/objects/cdd/.gitignore
include/ncbi-tools++/objects/cdd/Algorithm_type.hpp
include/ncbi-tools++/objects/cdd/Algorithm_type_.hpp
@@ -979,7 +951,6 @@ include/ncbi-tools++/objects/cdd/Update_align_.hpp
include/ncbi-tools++/objects/cdd/Update_comment.hpp
include/ncbi-tools++/objects/cdd/Update_comment_.hpp
include/ncbi-tools++/objects/cdd/cdd__.hpp
-include/ncbi-tools++/objects/cn3d/.cvsignore
include/ncbi-tools++/objects/cn3d/.gitignore
include/ncbi-tools++/objects/cn3d/Cn3d_GL_matrix.hpp
include/ncbi-tools++/objects/cn3d/Cn3d_GL_matrix_.hpp
@@ -1023,7 +994,6 @@ include/ncbi-tools++/objects/cn3d/Cn3d_view_settings.hpp
include/ncbi-tools++/objects/cn3d/Cn3d_view_settings_.hpp
include/ncbi-tools++/objects/cn3d/NCBI_Cn3d_module.hpp
include/ncbi-tools++/objects/cn3d/cn3d__.hpp
-include/ncbi-tools++/objects/coords/.cvsignore
include/ncbi-tools++/objects/coords/.gitignore
include/ncbi-tools++/objects/coords/HGVS_Coordinate.hpp
include/ncbi-tools++/objects/coords/HGVS_Coordinate_.hpp
@@ -1036,7 +1006,6 @@ include/ncbi-tools++/objects/dbsnp/primary_track/dbsnp.pb.h
include/ncbi-tools++/objects/dbsnp/primary_track/dbsnp_mock.grpc.pb.h
include/ncbi-tools++/objects/dbsnp/primary_track/impl/snpptis_impl.hpp
include/ncbi-tools++/objects/dbsnp/primary_track/snpptis.hpp
-include/ncbi-tools++/objects/docsum/.cvsignore
include/ncbi-tools++/objects/docsum/.gitignore
include/ncbi-tools++/objects/docsum/Assay.hpp
include/ncbi-tools++/objects/docsum/Assay_.hpp
@@ -1064,7 +1033,6 @@ include/ncbi-tools++/objects/docsum/Rs_.hpp
include/ncbi-tools++/objects/docsum/Ss.hpp
include/ncbi-tools++/objects/docsum/Ss_.hpp
include/ncbi-tools++/objects/docsum/docsum__.hpp
-include/ncbi-tools++/objects/entrez2/.cvsignore
include/ncbi-tools++/objects/entrez2/.gitignore
include/ncbi-tools++/objects/entrez2/E2Reply.hpp
include/ncbi-tools++/objects/entrez2/E2Reply_.hpp
@@ -1144,7 +1112,6 @@ include/ncbi-tools++/objects/entrez2/NCBI_Entrez2_module.hpp
include/ncbi-tools++/objects/entrez2/entrez2__.hpp
include/ncbi-tools++/objects/entrez2/entrez2_client.hpp
include/ncbi-tools++/objects/entrez2/entrez2_client_.hpp
-include/ncbi-tools++/objects/entrezgene/.cvsignore
include/ncbi-tools++/objects/entrezgene/.gitignore
include/ncbi-tools++/objects/entrezgene/Entrezgene.hpp
include/ncbi-tools++/objects/entrezgene/Entrezgene_.hpp
@@ -1164,7 +1131,6 @@ include/ncbi-tools++/objects/entrezgene/Other_source_.hpp
include/ncbi-tools++/objects/entrezgene/Xtra_Terms.hpp
include/ncbi-tools++/objects/entrezgene/Xtra_Terms_.hpp
include/ncbi-tools++/objects/entrezgene/entrezgene__.hpp
-include/ncbi-tools++/objects/featdef/.cvsignore
include/ncbi-tools++/objects/featdef/.gitignore
include/ncbi-tools++/objects/featdef/FeatDef.hpp
include/ncbi-tools++/objects/featdef/FeatDefGroupSet.hpp
@@ -1180,7 +1146,6 @@ include/ncbi-tools++/objects/featdef/FeatMolType.hpp
include/ncbi-tools++/objects/featdef/FeatMolType_.hpp
include/ncbi-tools++/objects/featdef/NCBI_FeatDef_module.hpp
include/ncbi-tools++/objects/featdef/featdef__.hpp
-include/ncbi-tools++/objects/gbproj/.cvsignore
include/ncbi-tools++/objects/gbproj/.gitignore
include/ncbi-tools++/objects/gbproj/AbstractProjectItem.hpp
include/ncbi-tools++/objects/gbproj/AbstractProjectItem_.hpp
@@ -1212,7 +1177,6 @@ include/ncbi-tools++/objects/gbproj/ViewMemento_.hpp
include/ncbi-tools++/objects/gbproj/gbproj__.hpp
include/ncbi-tools++/objects/gbproj/gbproj_export.h
include/ncbi-tools++/objects/gbproj/igbproject.hpp
-include/ncbi-tools++/objects/gbseq/.cvsignore
include/ncbi-tools++/objects/gbseq/.gitignore
include/ncbi-tools++/objects/gbseq/GBAltSeqData.hpp
include/ncbi-tools++/objects/gbseq/GBAltSeqData_.hpp
@@ -1252,7 +1216,6 @@ include/ncbi-tools++/objects/gbseq/GBXref.hpp
include/ncbi-tools++/objects/gbseq/GBXref_.hpp
include/ncbi-tools++/objects/gbseq/NCBI_GBSeq_module.hpp
include/ncbi-tools++/objects/gbseq/gbseq__.hpp
-include/ncbi-tools++/objects/general/.cvsignore
include/ncbi-tools++/objects/general/.gitignore
include/ncbi-tools++/objects/general/Date.hpp
include/ncbi-tools++/objects/general/Date_.hpp
@@ -1277,7 +1240,6 @@ include/ncbi-tools++/objects/general/general__.hpp
include/ncbi-tools++/objects/general/general_exception.hpp
include/ncbi-tools++/objects/general/general_macros.hpp
include/ncbi-tools++/objects/general/uoconv.hpp
-include/ncbi-tools++/objects/genesbyloc/.cvsignore
include/ncbi-tools++/objects/genesbyloc/.gitignore
include/ncbi-tools++/objects/genesbyloc/GBL_Data.hpp
include/ncbi-tools++/objects/genesbyloc/GBL_Data_.hpp
@@ -1287,7 +1249,6 @@ include/ncbi-tools++/objects/genesbyloc/GBL_Reply.hpp
include/ncbi-tools++/objects/genesbyloc/GBL_Reply_.hpp
include/ncbi-tools++/objects/genesbyloc/NCBI_GenesByLoc_module.hpp
include/ncbi-tools++/objects/genesbyloc/genesbyloc__.hpp
-include/ncbi-tools++/objects/genomecoll/.cvsignore
include/ncbi-tools++/objects/genomecoll/.gitignore
include/ncbi-tools++/objects/genomecoll/GCClientRequest.hpp
include/ncbi-tools++/objects/genomecoll/GCClientRequest_.hpp
@@ -1360,7 +1321,6 @@ include/ncbi-tools++/objects/genomecoll/gencoll_client__.hpp
include/ncbi-tools++/objects/genomecoll/genome_collection__.hpp
include/ncbi-tools++/objects/genomecoll/genomic_collections_cli.hpp
include/ncbi-tools++/objects/genomecoll/genomic_collections_cli_.hpp
-include/ncbi-tools++/objects/homologene/.cvsignore
include/ncbi-tools++/objects/homologene/.gitignore
include/ncbi-tools++/objects/homologene/HG_Alignment.hpp
include/ncbi-tools++/objects/homologene/HG_AlignmentSet.hpp
@@ -1390,7 +1350,6 @@ include/ncbi-tools++/objects/homologene/HG_Stats.hpp
include/ncbi-tools++/objects/homologene/HG_Stats_.hpp
include/ncbi-tools++/objects/homologene/HomoloGene_module.hpp
include/ncbi-tools++/objects/homologene/homologene__.hpp
-include/ncbi-tools++/objects/id1/.cvsignore
include/ncbi-tools++/objects/id1/.gitignore
include/ncbi-tools++/objects/id1/Entry_complexities.hpp
include/ncbi-tools++/objects/id1/Entry_complexities_.hpp
@@ -1412,7 +1371,6 @@ include/ncbi-tools++/objects/id1/NCBI_ID1Access_module.hpp
include/ncbi-tools++/objects/id1/id1__.hpp
include/ncbi-tools++/objects/id1/id1_client.hpp
include/ncbi-tools++/objects/id1/id1_client_.hpp
-include/ncbi-tools++/objects/id2/.cvsignore
include/ncbi-tools++/objects/id2/.gitignore
include/ncbi-tools++/objects/id2/ID2S_Reply_Get_Chunk.hpp
include/ncbi-tools++/objects/id2/ID2S_Reply_Get_Chunk_.hpp
@@ -1474,7 +1432,6 @@ include/ncbi-tools++/objects/id2/id2_client.hpp
include/ncbi-tools++/objects/id2/id2_client_.hpp
include/ncbi-tools++/objects/id2/id2processor.hpp
include/ncbi-tools++/objects/id2/id2processor_interface.hpp
-include/ncbi-tools++/objects/insdseq/.cvsignore
include/ncbi-tools++/objects/insdseq/.gitignore
include/ncbi-tools++/objects/insdseq/INSDAltSeqData.hpp
include/ncbi-tools++/objects/insdseq/INSDAltSeqData_.hpp
@@ -1514,7 +1471,6 @@ include/ncbi-tools++/objects/insdseq/INSDXref.hpp
include/ncbi-tools++/objects/insdseq/INSDXref_.hpp
include/ncbi-tools++/objects/insdseq/INSD_INSDSeq_module.hpp
include/ncbi-tools++/objects/insdseq/insdseq__.hpp
-include/ncbi-tools++/objects/macro/.cvsignore
include/ncbi-tools++/objects/macro/.gitignore
include/ncbi-tools++/objects/macro/AECRParse_action.hpp
include/ncbi-tools++/objects/macro/AECRParse_action_.hpp
@@ -1876,7 +1832,6 @@ include/ncbi-tools++/objects/macro/Word_substitution_set_.hpp
include/ncbi-tools++/objects/macro/Xref_type.hpp
include/ncbi-tools++/objects/macro/Xref_type_.hpp
include/ncbi-tools++/objects/macro/macro__.hpp
-include/ncbi-tools++/objects/medlars/.cvsignore
include/ncbi-tools++/objects/medlars/.gitignore
include/ncbi-tools++/objects/medlars/Medlars_entry.hpp
include/ncbi-tools++/objects/medlars/Medlars_entry_.hpp
@@ -1884,7 +1839,6 @@ include/ncbi-tools++/objects/medlars/Medlars_record.hpp
include/ncbi-tools++/objects/medlars/Medlars_record_.hpp
include/ncbi-tools++/objects/medlars/NCBI_Medlars_module.hpp
include/ncbi-tools++/objects/medlars/medlars__.hpp
-include/ncbi-tools++/objects/medline/.cvsignore
include/ncbi-tools++/objects/medline/.gitignore
include/ncbi-tools++/objects/medline/DocRef.hpp
include/ncbi-tools++/objects/medline/DocRef_.hpp
@@ -1902,7 +1856,6 @@ include/ncbi-tools++/objects/medline/Medline_si.hpp
include/ncbi-tools++/objects/medline/Medline_si_.hpp
include/ncbi-tools++/objects/medline/NCBI_Medline_module.hpp
include/ncbi-tools++/objects/medline/medline__.hpp
-include/ncbi-tools++/objects/mim/.cvsignore
include/ncbi-tools++/objects/mim/.gitignore
include/ncbi-tools++/objects/mim/Mim_allelic_variant.hpp
include/ncbi-tools++/objects/mim/Mim_allelic_variant_.hpp
@@ -1935,7 +1888,6 @@ include/ncbi-tools++/objects/mim/mim__.hpp
include/ncbi-tools++/objects/misc/error_codes.hpp
include/ncbi-tools++/objects/misc/sequence_macros.hpp
include/ncbi-tools++/objects/misc/sequence_util_macros.hpp
-include/ncbi-tools++/objects/mla/.cvsignore
include/ncbi-tools++/objects/mla/.gitignore
include/ncbi-tools++/objects/mla/Error_val.hpp
include/ncbi-tools++/objects/mla/Error_val_.hpp
@@ -1953,7 +1905,6 @@ include/ncbi-tools++/objects/mla/Title_type_.hpp
include/ncbi-tools++/objects/mla/mla__.hpp
include/ncbi-tools++/objects/mla/mla_client.hpp
include/ncbi-tools++/objects/mla/mla_client_.hpp
-include/ncbi-tools++/objects/mmdb1/.cvsignore
include/ncbi-tools++/objects/mmdb1/.gitignore
include/ncbi-tools++/objects/mmdb1/Atom.hpp
include/ncbi-tools++/objects/mmdb1/Atom_.hpp
@@ -2016,7 +1967,6 @@ include/ncbi-tools++/objects/mmdb1/Residue_graph_pntr_.hpp
include/ncbi-tools++/objects/mmdb1/Residue_id.hpp
include/ncbi-tools++/objects/mmdb1/Residue_id_.hpp
include/ncbi-tools++/objects/mmdb1/mmdb1__.hpp
-include/ncbi-tools++/objects/mmdb2/.cvsignore
include/ncbi-tools++/objects/mmdb2/.gitignore
include/ncbi-tools++/objects/mmdb2/Alternate_conformation_id.hpp
include/ncbi-tools++/objects/mmdb2/Alternate_conformation_id_.hpp
@@ -2064,7 +2014,6 @@ include/ncbi-tools++/objects/mmdb2/T_mesh_.hpp
include/ncbi-tools++/objects/mmdb2/Triangles.hpp
include/ncbi-tools++/objects/mmdb2/Triangles_.hpp
include/ncbi-tools++/objects/mmdb2/mmdb2__.hpp
-include/ncbi-tools++/objects/mmdb3/.cvsignore
include/ncbi-tools++/objects/mmdb3/.gitignore
include/ncbi-tools++/objects/mmdb3/Align_stats.hpp
include/ncbi-tools++/objects/mmdb3/Align_stats_.hpp
@@ -2142,7 +2091,6 @@ include/ncbi-tools++/objects/mmdb3/Trans_matrix_.hpp
include/ncbi-tools++/objects/mmdb3/Transform.hpp
include/ncbi-tools++/objects/mmdb3/Transform_.hpp
include/ncbi-tools++/objects/mmdb3/mmdb3__.hpp
-include/ncbi-tools++/objects/ncbimime/.cvsignore
include/ncbi-tools++/objects/ncbimime/.gitignore
include/ncbi-tools++/objects/ncbimime/Biostruc_align.hpp
include/ncbi-tools++/objects/ncbimime/Biostruc_align_.hpp
@@ -2164,7 +2112,6 @@ include/ncbi-tools++/objects/ncbimime/NCBI_Mime_module.hpp
include/ncbi-tools++/objects/ncbimime/Ncbi_mime_asn1.hpp
include/ncbi-tools++/objects/ncbimime/Ncbi_mime_asn1_.hpp
include/ncbi-tools++/objects/ncbimime/ncbimime__.hpp
-include/ncbi-tools++/objects/objprt/.cvsignore
include/ncbi-tools++/objects/objprt/.gitignore
include/ncbi-tools++/objects/objprt/NCBI_ObjPrt_module.hpp
include/ncbi-tools++/objects/objprt/PrintForm.hpp
@@ -2188,7 +2135,6 @@ include/ncbi-tools++/objects/objprt/TemplateName_.hpp
include/ncbi-tools++/objects/objprt/UserFormat.hpp
include/ncbi-tools++/objects/objprt/UserFormat_.hpp
include/ncbi-tools++/objects/objprt/objprt__.hpp
-include/ncbi-tools++/objects/omssa/.cvsignore
include/ncbi-tools++/objects/omssa/.gitignore
include/ncbi-tools++/objects/omssa/MSBioseq.hpp
include/ncbi-tools++/objects/omssa/MSBioseqSet.hpp
@@ -2276,7 +2222,6 @@ include/ncbi-tools++/objects/omssa/NameValue.hpp
include/ncbi-tools++/objects/omssa/NameValue_.hpp
include/ncbi-tools++/objects/omssa/OMSSA_module.hpp
include/ncbi-tools++/objects/omssa/omssa__.hpp
-include/ncbi-tools++/objects/pcassay/.cvsignore
include/ncbi-tools++/objects/pcassay/.gitignore
include/ncbi-tools++/objects/pcassay/NCBI_PCAssay_module.hpp
include/ncbi-tools++/objects/pcassay/PC_AnnotatedXRef.hpp
@@ -2312,7 +2257,35 @@ include/ncbi-tools++/objects/pcassay/PC_RealMinMax_.hpp
include/ncbi-tools++/objects/pcassay/PC_ResultType.hpp
include/ncbi-tools++/objects/pcassay/PC_ResultType_.hpp
include/ncbi-tools++/objects/pcassay/pcassay__.hpp
-include/ncbi-tools++/objects/pcsubstance/.cvsignore
+include/ncbi-tools++/objects/pcassay2/.gitignore
+include/ncbi-tools++/objects/pcassay2/NCBI_PCAssay2_module.hpp
+include/ncbi-tools++/objects/pcassay2/PC_AnnotatedXRef.hpp
+include/ncbi-tools++/objects/pcassay2/PC_AnnotatedXRef_.hpp
+include/ncbi-tools++/objects/pcassay2/PC_AssayContainer.hpp
+include/ncbi-tools++/objects/pcassay2/PC_AssayContainer_.hpp
+include/ncbi-tools++/objects/pcassay2/PC_AssayDRAttr.hpp
+include/ncbi-tools++/objects/pcassay2/PC_AssayDRAttr_.hpp
+include/ncbi-tools++/objects/pcassay2/PC_AssayData.hpp
+include/ncbi-tools++/objects/pcassay2/PC_AssayData_.hpp
+include/ncbi-tools++/objects/pcassay2/PC_AssayDescription.hpp
+include/ncbi-tools++/objects/pcassay2/PC_AssayDescription_.hpp
+include/ncbi-tools++/objects/pcassay2/PC_AssayResults.hpp
+include/ncbi-tools++/objects/pcassay2/PC_AssayResults_.hpp
+include/ncbi-tools++/objects/pcassay2/PC_AssaySubmit.hpp
+include/ncbi-tools++/objects/pcassay2/PC_AssaySubmit_.hpp
+include/ncbi-tools++/objects/pcassay2/PC_AssayTargetInfo.hpp
+include/ncbi-tools++/objects/pcassay2/PC_AssayTargetInfo_.hpp
+include/ncbi-tools++/objects/pcassay2/PC_CategorizedComment.hpp
+include/ncbi-tools++/objects/pcassay2/PC_CategorizedComment_.hpp
+include/ncbi-tools++/objects/pcassay2/PC_ConcentrationAttr.hpp
+include/ncbi-tools++/objects/pcassay2/PC_ConcentrationAttr_.hpp
+include/ncbi-tools++/objects/pcassay2/PC_IntegerMinMax.hpp
+include/ncbi-tools++/objects/pcassay2/PC_IntegerMinMax_.hpp
+include/ncbi-tools++/objects/pcassay2/PC_RealMinMax.hpp
+include/ncbi-tools++/objects/pcassay2/PC_RealMinMax_.hpp
+include/ncbi-tools++/objects/pcassay2/PC_ResultType.hpp
+include/ncbi-tools++/objects/pcassay2/PC_ResultType_.hpp
+include/ncbi-tools++/objects/pcassay2/pcassay2__.hpp
include/ncbi-tools++/objects/pcsubstance/.gitignore
include/ncbi-tools++/objects/pcsubstance/NCBI_PCSubstance_module.hpp
include/ncbi-tools++/objects/pcsubstance/PC_AtomInt.hpp
@@ -2331,6 +2304,8 @@ include/ncbi-tools++/objects/pcsubstance/PC_BondType.hpp
include/ncbi-tools++/objects/pcsubstance/PC_BondType_.hpp
include/ncbi-tools++/objects/pcsubstance/PC_Bonds.hpp
include/ncbi-tools++/objects/pcsubstance/PC_Bonds_.hpp
+include/ncbi-tools++/objects/pcsubstance/PC_Bracket.hpp
+include/ncbi-tools++/objects/pcsubstance/PC_Bracket_.hpp
include/ncbi-tools++/objects/pcsubstance/PC_Compound.hpp
include/ncbi-tools++/objects/pcsubstance/PC_CompoundType.hpp
include/ncbi-tools++/objects/pcsubstance/PC_CompoundType_.hpp
@@ -2353,6 +2328,8 @@ include/ncbi-tools++/objects/pcsubstance/PC_DrawAnnotations.hpp
include/ncbi-tools++/objects/pcsubstance/PC_DrawAnnotations_.hpp
include/ncbi-tools++/objects/pcsubstance/PC_Element.hpp
include/ncbi-tools++/objects/pcsubstance/PC_Element_.hpp
+include/ncbi-tools++/objects/pcsubstance/PC_Group.hpp
+include/ncbi-tools++/objects/pcsubstance/PC_Group_.hpp
include/ncbi-tools++/objects/pcsubstance/PC_ID.hpp
include/ncbi-tools++/objects/pcsubstance/PC_ID_.hpp
include/ncbi-tools++/objects/pcsubstance/PC_InfoData.hpp
@@ -2390,7 +2367,6 @@ include/ncbi-tools++/objects/pcsubstance/PC_Urn_.hpp
include/ncbi-tools++/objects/pcsubstance/PC_XRefData.hpp
include/ncbi-tools++/objects/pcsubstance/PC_XRefData_.hpp
include/ncbi-tools++/objects/pcsubstance/pcsubstance__.hpp
-include/ncbi-tools++/objects/proj/.cvsignore
include/ncbi-tools++/objects/proj/.gitignore
include/ncbi-tools++/objects/proj/NCBI_Project_module.hpp
include/ncbi-tools++/objects/proj/Projdesc.hpp
@@ -2404,7 +2380,6 @@ include/ncbi-tools++/objects/proj/Project_id_.hpp
include/ncbi-tools++/objects/proj/Project_item.hpp
include/ncbi-tools++/objects/proj/Project_item_.hpp
include/ncbi-tools++/objects/proj/proj__.hpp
-include/ncbi-tools++/objects/pub/.cvsignore
include/ncbi-tools++/objects/pub/.gitignore
include/ncbi-tools++/objects/pub/NCBI_Pub_module.hpp
include/ncbi-tools++/objects/pub/Pub.hpp
@@ -2415,7 +2390,6 @@ include/ncbi-tools++/objects/pub/Pub_set.hpp
include/ncbi-tools++/objects/pub/Pub_set_.hpp
include/ncbi-tools++/objects/pub/pub__.hpp
include/ncbi-tools++/objects/pub/pub_macros.hpp
-include/ncbi-tools++/objects/pubmed/.cvsignore
include/ncbi-tools++/objects/pubmed/.gitignore
include/ncbi-tools++/objects/pubmed/NCBI_PubMed_module.hpp
include/ncbi-tools++/objects/pubmed/Pubmed_entry.hpp
@@ -2423,7 +2397,6 @@ include/ncbi-tools++/objects/pubmed/Pubmed_entry_.hpp
include/ncbi-tools++/objects/pubmed/Pubmed_url.hpp
include/ncbi-tools++/objects/pubmed/Pubmed_url_.hpp
include/ncbi-tools++/objects/pubmed/pubmed__.hpp
-include/ncbi-tools++/objects/remap/.cvsignore
include/ncbi-tools++/objects/remap/.gitignore
include/ncbi-tools++/objects/remap/NCBI_Remap_module.hpp
include/ncbi-tools++/objects/remap/RMReply.hpp
@@ -2445,7 +2418,6 @@ include/ncbi-tools++/objects/remap/Remap_result_.hpp
include/ncbi-tools++/objects/remap/remap__.hpp
include/ncbi-tools++/objects/remap/remap_client.hpp
include/ncbi-tools++/objects/remap/remap_client_.hpp
-include/ncbi-tools++/objects/scoremat/.cvsignore
include/ncbi-tools++/objects/scoremat/.gitignore
include/ncbi-tools++/objects/scoremat/BlockProperty.hpp
include/ncbi-tools++/objects/scoremat/BlockProperty_.hpp
@@ -2473,7 +2445,6 @@ include/ncbi-tools++/objects/scoremat/Site_annot_.hpp
include/ncbi-tools++/objects/scoremat/Site_annot_set.hpp
include/ncbi-tools++/objects/scoremat/Site_annot_set_.hpp
include/ncbi-tools++/objects/scoremat/scoremat__.hpp
-include/ncbi-tools++/objects/seq/.cvsignore
include/ncbi-tools++/objects/seq/.gitignore
include/ncbi-tools++/objects/seq/Align_def.hpp
include/ncbi-tools++/objects/seq/Align_def_.hpp
@@ -2575,7 +2546,6 @@ include/ncbi-tools++/objects/seq/seqlocinfo.hpp
include/ncbi-tools++/objects/seq/seqport_util.hpp
include/ncbi-tools++/objects/seq/so_map.hpp
include/ncbi-tools++/objects/seq/sofa_type.hpp
-include/ncbi-tools++/objects/seqalign/.cvsignore
include/ncbi-tools++/objects/seqalign/.gitignore
include/ncbi-tools++/objects/seqalign/Dense_diag.hpp
include/ncbi-tools++/objects/seqalign/Dense_diag_.hpp
@@ -2617,7 +2587,6 @@ include/ncbi-tools++/objects/seqalign/Std_seg_.hpp
include/ncbi-tools++/objects/seqalign/seqalign__.hpp
include/ncbi-tools++/objects/seqalign/seqalign_exception.hpp
include/ncbi-tools++/objects/seqalign/seqalign_macros.hpp
-include/ncbi-tools++/objects/seqblock/.cvsignore
include/ncbi-tools++/objects/seqblock/.gitignore
include/ncbi-tools++/objects/seqblock/EMBL_General_module.hpp
include/ncbi-tools++/objects/seqblock/EMBL_block.hpp
@@ -2647,7 +2616,6 @@ include/ncbi-tools++/objects/seqblock/SP_block.hpp
include/ncbi-tools++/objects/seqblock/SP_block_.hpp
include/ncbi-tools++/objects/seqblock/seqblock__.hpp
include/ncbi-tools++/objects/seqblock/seqblock_macros.hpp
-include/ncbi-tools++/objects/seqcode/.cvsignore
include/ncbi-tools++/objects/seqcode/.gitignore
include/ncbi-tools++/objects/seqcode/NCBI_SeqCode_module.hpp
include/ncbi-tools++/objects/seqcode/Seq_code_set.hpp
@@ -2659,7 +2627,6 @@ include/ncbi-tools++/objects/seqcode/Seq_code_type_.hpp
include/ncbi-tools++/objects/seqcode/Seq_map_table.hpp
include/ncbi-tools++/objects/seqcode/Seq_map_table_.hpp
include/ncbi-tools++/objects/seqcode/seqcode__.hpp
-include/ncbi-tools++/objects/seqedit/.cvsignore
include/ncbi-tools++/objects/seqedit/.gitignore
include/ncbi-tools++/objects/seqedit/NCBI_SeqEdit_module.hpp
include/ncbi-tools++/objects/seqedit/SeqEdit_Cmd.hpp
@@ -2709,7 +2676,6 @@ include/ncbi-tools++/objects/seqedit/SeqEdit_Cmd_SetDescr_.hpp
include/ncbi-tools++/objects/seqedit/SeqEdit_Id.hpp
include/ncbi-tools++/objects/seqedit/SeqEdit_Id_.hpp
include/ncbi-tools++/objects/seqedit/seqedit__.hpp
-include/ncbi-tools++/objects/seqfeat/.cvsignore
include/ncbi-tools++/objects/seqfeat/.gitignore
include/ncbi-tools++/objects/seqfeat/BinomialOrgName.hpp
include/ncbi-tools++/objects/seqfeat/BinomialOrgName_.hpp
@@ -2831,7 +2797,6 @@ include/ncbi-tools++/objects/seqfeat/Variation_ref.hpp
include/ncbi-tools++/objects/seqfeat/Variation_ref_.hpp
include/ncbi-tools++/objects/seqfeat/seqfeat__.hpp
include/ncbi-tools++/objects/seqfeat/seqfeat_macros.hpp
-include/ncbi-tools++/objects/seqloc/.cvsignore
include/ncbi-tools++/objects/seqloc/.gitignore
include/ncbi-tools++/objects/seqloc/Giimport_id.hpp
include/ncbi-tools++/objects/seqloc/Giimport_id_.hpp
@@ -2868,7 +2833,6 @@ include/ncbi-tools++/objects/seqloc/Textseq_id.hpp
include/ncbi-tools++/objects/seqloc/Textseq_id_.hpp
include/ncbi-tools++/objects/seqloc/seqloc__.hpp
include/ncbi-tools++/objects/seqloc/seqloc_macros.hpp
-include/ncbi-tools++/objects/seqres/.cvsignore
include/ncbi-tools++/objects/seqres/.gitignore
include/ncbi-tools++/objects/seqres/Byte_graph.hpp
include/ncbi-tools++/objects/seqres/Byte_graph_.hpp
@@ -2880,7 +2844,6 @@ include/ncbi-tools++/objects/seqres/Real_graph_.hpp
include/ncbi-tools++/objects/seqres/Seq_graph.hpp
include/ncbi-tools++/objects/seqres/Seq_graph_.hpp
include/ncbi-tools++/objects/seqres/seqres__.hpp
-include/ncbi-tools++/objects/seqset/.cvsignore
include/ncbi-tools++/objects/seqset/.gitignore
include/ncbi-tools++/objects/seqset/Bioseq_set.hpp
include/ncbi-tools++/objects/seqset/Bioseq_set_.hpp
@@ -2891,7 +2854,6 @@ include/ncbi-tools++/objects/seqset/gb_release_file.hpp
include/ncbi-tools++/objects/seqset/seqset__.hpp
include/ncbi-tools++/objects/seqset/seqset_exception.hpp
include/ncbi-tools++/objects/seqset/seqset_macros.hpp
-include/ncbi-tools++/objects/seqsplit/.cvsignore
include/ncbi-tools++/objects/seqsplit/.gitignore
include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_Ids.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_Ids_.hpp
@@ -2949,7 +2911,6 @@ include/ncbi-tools++/objects/seqsplit/ID2S_Split_Info.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Split_Info_.hpp
include/ncbi-tools++/objects/seqsplit/NCBI_Seq_split_module.hpp
include/ncbi-tools++/objects/seqsplit/seqsplit__.hpp
-include/ncbi-tools++/objects/seqtable/.cvsignore
include/ncbi-tools++/objects/seqtable/.gitignore
include/ncbi-tools++/objects/seqtable/BVector_data.hpp
include/ncbi-tools++/objects/seqtable/BVector_data_.hpp
@@ -2977,7 +2938,6 @@ include/ncbi-tools++/objects/seqtable/Seq_table_.hpp
include/ncbi-tools++/objects/seqtable/impl/delta_cache.hpp
include/ncbi-tools++/objects/seqtable/seq_table_exception.hpp
include/ncbi-tools++/objects/seqtable/seqtable__.hpp
-include/ncbi-tools++/objects/seqtest/.cvsignore
include/ncbi-tools++/objects/seqtest/.gitignore
include/ncbi-tools++/objects/seqtest/NCBI_SeqTest_module.hpp
include/ncbi-tools++/objects/seqtest/SeqTestResults.hpp
@@ -2987,7 +2947,6 @@ include/ncbi-tools++/objects/seqtest/Seq_test_result_.hpp
include/ncbi-tools++/objects/seqtest/Seq_test_result_set.hpp
include/ncbi-tools++/objects/seqtest/Seq_test_result_set_.hpp
include/ncbi-tools++/objects/seqtest/seqtest__.hpp
-include/ncbi-tools++/objects/submit/.cvsignore
include/ncbi-tools++/objects/submit/.gitignore
include/ncbi-tools++/objects/submit/Contact_info.hpp
include/ncbi-tools++/objects/submit/Contact_info_.hpp
@@ -2998,7 +2957,6 @@ include/ncbi-tools++/objects/submit/Submit_block.hpp
include/ncbi-tools++/objects/submit/Submit_block_.hpp
include/ncbi-tools++/objects/submit/submit__.hpp
include/ncbi-tools++/objects/submit/submit_macros.hpp
-include/ncbi-tools++/objects/taxon1/.cvsignore
include/ncbi-tools++/objects/taxon1/.gitignore
include/ncbi-tools++/objects/taxon1/NCBI_Taxon1_module.hpp
include/ncbi-tools++/objects/taxon1/Taxon1_data.hpp
@@ -3018,7 +2976,6 @@ include/ncbi-tools++/objects/taxon1/Taxon2_data_.hpp
include/ncbi-tools++/objects/taxon1/local_taxon.hpp
include/ncbi-tools++/objects/taxon1/taxon1.hpp
include/ncbi-tools++/objects/taxon1/taxon1__.hpp
-include/ncbi-tools++/objects/taxon3/.cvsignore
include/ncbi-tools++/objects/taxon3/.gitignore
include/ncbi-tools++/objects/taxon3/NCBI_Taxon3_module.hpp
include/ncbi-tools++/objects/taxon3/SequenceOfInt.hpp
@@ -3043,7 +3000,6 @@ include/ncbi-tools++/objects/taxon3/cached_taxon3.hpp
include/ncbi-tools++/objects/taxon3/itaxon3.hpp
include/ncbi-tools++/objects/taxon3/taxon3.hpp
include/ncbi-tools++/objects/taxon3/taxon3__.hpp
-include/ncbi-tools++/objects/tinyseq/.cvsignore
include/ncbi-tools++/objects/tinyseq/.gitignore
include/ncbi-tools++/objects/tinyseq/NCBI_TSeq_module.hpp
include/ncbi-tools++/objects/tinyseq/TSeq.hpp
@@ -3051,7 +3007,6 @@ include/ncbi-tools++/objects/tinyseq/TSeqSet.hpp
include/ncbi-tools++/objects/tinyseq/TSeqSet_.hpp
include/ncbi-tools++/objects/tinyseq/TSeq_.hpp
include/ncbi-tools++/objects/tinyseq/tinyseq__.hpp
-include/ncbi-tools++/objects/trackmgr/.cvsignore
include/ncbi-tools++/objects/trackmgr/.gitignore
include/ncbi-tools++/objects/trackmgr/NCBI_TrackManager_module.hpp
include/ncbi-tools++/objects/trackmgr/TMgr_ACL_AccessLevel.hpp
@@ -3211,7 +3166,6 @@ include/ncbi-tools++/objects/trackmgr/trackmgr_client.hpp
include/ncbi-tools++/objects/trackmgr/trackmgr_client_.hpp
include/ncbi-tools++/objects/trackmgr/trackmgr_export.h
include/ncbi-tools++/objects/trackmgr/trackset_client.hpp
-include/ncbi-tools++/objects/valerr/.cvsignore
include/ncbi-tools++/objects/valerr/.gitignore
include/ncbi-tools++/objects/valerr/NCBI_ValErrors_module.hpp
include/ncbi-tools++/objects/valerr/ValidErrItem.hpp
@@ -3219,7 +3173,6 @@ include/ncbi-tools++/objects/valerr/ValidErrItem_.hpp
include/ncbi-tools++/objects/valerr/ValidError.hpp
include/ncbi-tools++/objects/valerr/ValidError_.hpp
include/ncbi-tools++/objects/valerr/valerr__.hpp
-include/ncbi-tools++/objects/valid/.cvsignore
include/ncbi-tools++/objects/valid/.gitignore
include/ncbi-tools++/objects/valid/Comment_rule.hpp
include/ncbi-tools++/objects/valid/Comment_rule_.hpp
@@ -3239,7 +3192,6 @@ include/ncbi-tools++/objects/valid/Phrase_list_.hpp
include/ncbi-tools++/objects/valid/Severity_level.hpp
include/ncbi-tools++/objects/valid/Severity_level_.hpp
include/ncbi-tools++/objects/valid/valid__.hpp
-include/ncbi-tools++/objects/variation/.cvsignore
include/ncbi-tools++/objects/variation/.gitignore
include/ncbi-tools++/objects/variation/NCBI_VariationPackage_module.hpp
include/ncbi-tools++/objects/variation/VariantPlacement.hpp
@@ -3251,7 +3203,6 @@ include/ncbi-tools++/objects/variation/VariationMethod.hpp
include/ncbi-tools++/objects/variation/VariationMethod_.hpp
include/ncbi-tools++/objects/variation/Variation_.hpp
include/ncbi-tools++/objects/variation/variation__.hpp
-include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/.cvsignore
include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/.gitignore
include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/Error.hpp
include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/Error_.hpp
@@ -3261,7 +3212,6 @@ include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/Placement_.hpp
include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/SearchByRsIdReply.hpp
include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/SearchByRsIdReply_.hpp
include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.hpp
-include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/.cvsignore
include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/.gitignore
include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData.hpp
include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.hpp
@@ -3275,7 +3225,6 @@ include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipSe
include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipServiceReply_.hpp
include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/NCBI_dbsnp_tooltips_module.hpp
include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.hpp
-include/ncbi-tools++/objects/varrep/.cvsignore
include/ncbi-tools++/objects/varrep/.gitignore
include/ncbi-tools++/objects/varrep/AaInterval.hpp
include/ncbi-tools++/objects/varrep/AaInterval_.hpp
@@ -3552,13 +3501,13 @@ include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_general.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_isam.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_lmdb.hpp
include/ncbi-tools++/objtools/blast/services/blast_services.hpp
-include/ncbi-tools++/objtools/cleanup/autogenerated_cleanup.hpp
include/ncbi-tools++/objtools/cleanup/capitalization_string.hpp
include/ncbi-tools++/objtools/cleanup/cleanup.hpp
include/ncbi-tools++/objtools/cleanup/cleanup_change.hpp
include/ncbi-tools++/objtools/cleanup/cleanup_message.hpp
include/ncbi-tools++/objtools/cleanup/cleanup_pub.hpp
include/ncbi-tools++/objtools/cleanup/fix_feature_id.hpp
+include/ncbi-tools++/objtools/cleanup/huge_file_cleanup.hpp
include/ncbi-tools++/objtools/data_loaders/blastdb/bdbloader.hpp
include/ncbi-tools++/objtools/data_loaders/blastdb/bdbloader_rmt.hpp
include/ncbi-tools++/objtools/data_loaders/blastdb/blastdb_adapter.hpp
@@ -3622,6 +3571,7 @@ include/ncbi-tools++/objtools/edit/cds_fix.hpp
include/ncbi-tools++/objtools/edit/dblink_field.hpp
include/ncbi-tools++/objtools/edit/edit_error.hpp
include/ncbi-tools++/objtools/edit/edit_exception.hpp
+include/ncbi-tools++/objtools/edit/eutils_updater.hpp
include/ncbi-tools++/objtools/edit/external_annots.hpp
include/ncbi-tools++/objtools/edit/feattable_edit.hpp
include/ncbi-tools++/objtools/edit/feature_propagate.hpp
@@ -3630,13 +3580,20 @@ include/ncbi-tools++/objtools/edit/gap_trim.hpp
include/ncbi-tools++/objtools/edit/gaps_edit.hpp
include/ncbi-tools++/objtools/edit/gb_block_field.hpp
include/ncbi-tools++/objtools/edit/gene_utils.hpp
+include/ncbi-tools++/objtools/edit/huge_asn_loader.hpp
+include/ncbi-tools++/objtools/edit/huge_asn_macro_reader.hpp
+include/ncbi-tools++/objtools/edit/huge_asn_reader.hpp
+include/ncbi-tools++/objtools/edit/huge_file.hpp
+include/ncbi-tools++/objtools/edit/huge_file_process.hpp
include/ncbi-tools++/objtools/edit/link_cds_mrna.hpp
include/ncbi-tools++/objtools/edit/loc_edit.hpp
include/ncbi-tools++/objtools/edit/mail_report.hpp
+include/ncbi-tools++/objtools/edit/mla_updater.hpp
include/ncbi-tools++/objtools/edit/parse_text_options.hpp
include/ncbi-tools++/objtools/edit/promote.hpp
include/ncbi-tools++/objtools/edit/pub_fix.hpp
include/ncbi-tools++/objtools/edit/publication_edit.hpp
+include/ncbi-tools++/objtools/edit/pubmed_updater.hpp
include/ncbi-tools++/objtools/edit/remote_updater.hpp
include/ncbi-tools++/objtools/edit/rna_edit.hpp
include/ncbi-tools++/objtools/edit/seq_edit.hpp
@@ -3658,7 +3615,705 @@ include/ncbi-tools++/objtools/eutils/api/esearch.hpp
include/ncbi-tools++/objtools/eutils/api/espell.hpp
include/ncbi-tools++/objtools/eutils/api/esummary.hpp
include/ncbi-tools++/objtools/eutils/api/eutils.hpp
-include/ncbi-tools++/objtools/eutils/egquery/.cvsignore
+include/ncbi-tools++/objtools/eutils/efetch/.gitignore
+include/ncbi-tools++/objtools/eutils/efetch/Abs.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Abs_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Abstract.hpp
+include/ncbi-tools++/objtools/eutils/efetch/AbstractText.hpp
+include/ncbi-tools++/objtools/eutils/efetch/AbstractText_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Abstract_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/AccessionNumber.hpp
+include/ncbi-tools++/objtools/eutils/efetch/AccessionNumberList.hpp
+include/ncbi-tools++/objtools/eutils/efetch/AccessionNumberList_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/AccessionNumber_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Acronym.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Acronym_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Affiliation.hpp
+include/ncbi-tools++/objtools/eutils/efetch/AffiliationInfo.hpp
+include/ncbi-tools++/objtools/eutils/efetch/AffiliationInfo_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Affiliation_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Agency.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Agency_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/And.hpp
+include/ncbi-tools++/objtools/eutils/efetch/And_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Annotation.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Annotation_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Annotation_xml.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Annotation_xml_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Apply.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Apply_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Apply_content.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Apply_content_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Approx.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Approx_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arccos.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arccos_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arccosh.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arccosh_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arccot.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arccot_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arccoth.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arccoth_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arccsc.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arccsc_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arccsch.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arccsch_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arcsec.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arcsec_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arcsech.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arcsech_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arcsin.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arcsin_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arcsinh.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arcsinh_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arctan.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arctan_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arctanh.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arctanh_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arg.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Arg_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Article.hpp
+include/ncbi-tools++/objtools/eutils/efetch/ArticleDate.hpp
+include/ncbi-tools++/objtools/eutils/efetch/ArticleDate_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/ArticleId.hpp
+include/ncbi-tools++/objtools/eutils/efetch/ArticleIdList.hpp
+include/ncbi-tools++/objtools/eutils/efetch/ArticleIdList_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/ArticleId_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/ArticleTitle.hpp
+include/ncbi-tools++/objtools/eutils/efetch/ArticleTitle_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Article_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Author.hpp
+include/ncbi-tools++/objtools/eutils/efetch/AuthorList.hpp
+include/ncbi-tools++/objtools/eutils/efetch/AuthorList_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Author_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/B.hpp
+include/ncbi-tools++/objtools/eutils/efetch/B_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/BeginningDate.hpp
+include/ncbi-tools++/objtools/eutils/efetch/BeginningDate_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Bind.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Bind_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Bind_content.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Bind_content_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Book.hpp
+include/ncbi-tools++/objtools/eutils/efetch/BookDocument.hpp
+include/ncbi-tools++/objtools/eutils/efetch/BookDocumentSet.hpp
+include/ncbi-tools++/objtools/eutils/efetch/BookDocumentSet_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/BookDocument_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/BookTitle.hpp
+include/ncbi-tools++/objtools/eutils/efetch/BookTitle_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Book_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Bvar.hpp
+include/ncbi-tools++/objtools/eutils/efetch/BvarQ.hpp
+include/ncbi-tools++/objtools/eutils/efetch/BvarQ_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Bvar_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Card.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Card_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Cartesianproduct.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Cartesianproduct_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Cbytes.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Cbytes_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Ceiling.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Ceiling_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Cerror.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Cerror_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Chemical.hpp
+include/ncbi-tools++/objtools/eutils/efetch/ChemicalList.hpp
+include/ncbi-tools++/objtools/eutils/efetch/ChemicalList_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Chemical_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Ci.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Ci_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Ci_content.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Ci_content_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Citation.hpp
+include/ncbi-tools++/objtools/eutils/efetch/CitationSubset.hpp
+include/ncbi-tools++/objtools/eutils/efetch/CitationSubset_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Citation_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Cn.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Cn_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Cn_content.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Cn_content_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Codomain.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Codomain_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/CoiStatement.hpp
+include/ncbi-tools++/objtools/eutils/efetch/CoiStatement_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/CollectionTitle.hpp
+include/ncbi-tools++/objtools/eutils/efetch/CollectionTitle_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/CollectiveName.hpp
+include/ncbi-tools++/objtools/eutils/efetch/CollectiveName_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/CommentsCorrections.hpp
+include/ncbi-tools++/objtools/eutils/efetch/CommentsCorrectionsList.hpp
+include/ncbi-tools++/objtools/eutils/efetch/CommentsCorrectionsList_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/CommentsCorrections_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Complexes.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Complexes_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Compose.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Compose_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Condition.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Condition_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Conjugate.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Conjugate_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/ContExp.hpp
+include/ncbi-tools++/objtools/eutils/efetch/ContExp_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/ContractNumber.hpp
+include/ncbi-tools++/objtools/eutils/efetch/ContractNumber_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/ContributionDate.hpp
+include/ncbi-tools++/objtools/eutils/efetch/ContributionDate_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/CopyrightInformation.hpp
+include/ncbi-tools++/objtools/eutils/efetch/CopyrightInformation_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Cos.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Cos_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Cosh.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Cosh_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Cot.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Cot_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Coth.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Coth_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Country.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Country_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Cs.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Cs_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Csc.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Csc_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Csch.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Csch_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Csymbol.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Csymbol_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Csymbol_content.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Csymbol_content_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Curl.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Curl_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/DataBank.hpp
+include/ncbi-tools++/objtools/eutils/efetch/DataBankList.hpp
+include/ncbi-tools++/objtools/eutils/efetch/DataBankList_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/DataBankName.hpp
+include/ncbi-tools++/objtools/eutils/efetch/DataBankName_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/DataBank_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/DateCompleted.hpp
+include/ncbi-tools++/objtools/eutils/efetch/DateCompleted_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/DateRevised.hpp
+include/ncbi-tools++/objtools/eutils/efetch/DateRevised_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Day.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Day_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Declare.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Declare_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Degree.hpp
+include/ncbi-tools++/objtools/eutils/efetch/Degree_.hpp
+include/ncbi-tools++/objtools/eutils/efetch/DeleteCitation.hpp
+include/ncbi-tools++/objtools/eutils/efetch/DeleteCitation_.hpp
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