From nobody Sat May 27 01:25:24 2023 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4QSkch3tv0z4V2kR; Sat, 27 May 2023 01:25:24 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4QSkch3KpSz3wPc; Sat, 27 May 2023 01:25:24 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1685150724; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=YnRJ4ld0/saWf9GsLTEikBahLImCPHBgveFUS6JNt94=; b=Sa8bAvAGcyL4UvvZbkWbzKwXmIDiCUGSzxUSmpfpxiPbrSYO3g7GPSnj35gJeo6VmwJv/l OKT247L35N0/7LmHuUyxKKuetYH3cOXRZL3Bu09j9Yv0cQfkl1UWmvGuz5kyrErkZaFZxU N4uMkokrBTF98iLodxtgRuA3J9wO7ibZGDDq3fx82ifax0EMZB6csaxAmMoLHynAyYDfnG Nt+cTgn/Qe9fZw3qI4i8DjASwTuCNX+77slJuHZsVJaauZzSojYSaDdQf0iMDib+k2M+XY eIFdmVIn+Jgd+RGYQPzY3UK11fO5X/RVpzTx3Vu8GsRj96OAp1lIIVWnABvVtQ== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1685150724; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=YnRJ4ld0/saWf9GsLTEikBahLImCPHBgveFUS6JNt94=; b=IcZMbF+vd8DOLPqqL5A3grNqZTumNsNEJF9qfJKgvEJvKNkiJKv/ShGLoHtQIPvACu7QZ3 AmHzakTaZTQHLvNM1H1I+Ae6fZAgYdGCPIs6B589NQ9DokthUo53J97DIaZhujQpTVMrXq CdKGQPA0+DhSIRSJdYyx6dL4K/wYMLaucm53cl7tdYo2F8pela7cUFQv1iqdnYGgNMn0YJ EB1o4G5jw2PQZlpNrUqXsdOrcHOEzjHFsbZUiwMXfg7HS8Kc5UFQOhDBPuHmY9mB6Fx8cF S3GU2RpzUrzxhtpXulQPxcQf2YTdPG9BnssW53IlaJEfE1+jnf3Bfyv4dBL4Dg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1685150724; a=rsa-sha256; cv=none; b=AzCIZGLPPUuToV753Tkw6FaXfUS+0WITGPLM6ON0nfC4vSIn52w2qTlxUp4xQlSaQN1vLy HZ3oV9i1S3km3WPPF+hCgqSP0YzpoiXodgMuJbw7ngODu5xfr1ZvHdoFqg6mQeEsSm9tiG vMaDstI0RxKYuB90JOfO6h8TzWup8c/5kRguW59NfuENgsdJWnYiCJ8Ovbo8vvq1KoB5XF if1yktVJ7WCxIXvP+rXN6qYK7F5JfqeOGsWKc7FpxPwC/podoYvrZSxKEl3SqQGDiFGods 8sUhvQKEfPA4CeG+t2RjH1aYAWRwBca4fQ1V4z7ZDek3+uD0AQH6X1d+grsYFg== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4QSkch2NP4zV1P; Sat, 27 May 2023 01:25:24 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 34R1POqc022662; Sat, 27 May 2023 01:25:24 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 34R1POpE022661; Sat, 27 May 2023 01:25:24 GMT (envelope-from git) Date: Sat, 27 May 2023 01:25:24 GMT Message-Id: <202305270125.34R1POpE022661@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 5836db4f6725 - main - biology/ncbi-blast+: Update to 2.14.0 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 5836db4f6725afbc5e46953922685504675c37e5 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=5836db4f6725afbc5e46953922685504675c37e5 commit 5836db4f6725afbc5e46953922685504675c37e5 Author: Jason W. Bacon AuthorDate: 2023-05-27 01:22:36 +0000 Commit: Jason W. Bacon CommitDate: 2023-05-27 01:25:23 +0000 biology/ncbi-blast+: Update to 2.14.0 A few bug fixes, enhancements, and performance improvements Changes: https://www.ncbi.nlm.nih.gov/books/NBK131777/ --- biology/ncbi-blast+/Makefile | 9 +- biology/ncbi-blast+/distinfo | 6 +- ...jtools_blast_seqdb__reader_test_seqdb__perf.cpp | 18 +- biology/ncbi-blast+/pkg-plist | 917 ++++++++++++++++++--- 4 files changed, 827 insertions(+), 123 deletions(-) diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile index b24c056c6b8a..55de83407c4b 100644 --- a/biology/ncbi-blast+/Makefile +++ b/biology/ncbi-blast+/Makefile @@ -1,6 +1,5 @@ PORTNAME= ncbi-blast+ -DISTVERSION= 2.12.0 -PORTREVISION= 10 +DISTVERSION= 2.14.0 CATEGORIES= biology perl5 python MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \ https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/ @@ -8,7 +7,7 @@ DISTNAME= ncbi-blast-${PORTVERSION}+-src MAINTAINER= jwb@FreeBSD.org COMMENT= NCBI implementation of Basic Local Alignment Search Tool -WWW= http://blast.ncbi.nlm.nih.gov +WWW= https://blast.ncbi.nlm.nih.gov LICENSE= PD LICENSE_FILE= ${WRKSRC}/scripts/projects/blast/LICENSE @@ -29,7 +28,9 @@ LIB_DEPENDS= libpcre.so:devel/pcre \ libsqlite3.so:databases/sqlite3 \ libuv.so:devel/libuv \ libnghttp2.so:www/libnghttp2 \ - libgrpc.so:devel/grpc + libgrpc.so:devel/grpc \ + libzstd.so:archivers/zstd \ + libdw.so:devel/elfutils RUN_DEPENDS= p5-List-MoreUtils>=0:lang/p5-List-MoreUtils \ p5-JSON>=0:converters/p5-JSON diff --git a/biology/ncbi-blast+/distinfo b/biology/ncbi-blast+/distinfo index 94e598262859..a3b7142fbb2e 100644 --- a/biology/ncbi-blast+/distinfo +++ b/biology/ncbi-blast+/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1625068343 -SHA256 (ncbi-blast-2.12.0+-src.tar.gz) = fda3c9c9d488cad6c1880a98a236d842bcf3610e3e702af61f7a48cf0a714b88 -SIZE (ncbi-blast-2.12.0+-src.tar.gz) = 58245348 +TIMESTAMP = 1685108714 +SHA256 (ncbi-blast-2.14.0+-src.tar.gz) = bf477f1b0c3b82f0b7a7094bf003a9a83e37e3b0716c1df799060c4feab17500 +SIZE (ncbi-blast-2.14.0+-src.tar.gz) = 28200227 diff --git a/biology/ncbi-blast+/files/patch-src_objtools_blast_seqdb__reader_test_seqdb__perf.cpp b/biology/ncbi-blast+/files/patch-src_objtools_blast_seqdb__reader_test_seqdb__perf.cpp index f15e73c87671..3ea6f61a5619 100644 --- a/biology/ncbi-blast+/files/patch-src_objtools_blast_seqdb__reader_test_seqdb__perf.cpp +++ b/biology/ncbi-blast+/files/patch-src_objtools_blast_seqdb__reader_test_seqdb__perf.cpp @@ -1,21 +1,21 @@ ---- src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp.orig 2021-01-10 02:28:53 UTC +--- src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp.orig 2021-10-14 12:36:57 UTC +++ src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -@@ -137,7 +137,8 @@ CSeqDBPerfApp::x_ScanDatabase() - } +@@ -138,7 +138,8 @@ CSeqDBPerfApp::x_ScanDatabase() LOG_POST(Info << "Will go over " << oids2iterate.size() << " sequences"); --#if defined(NCBI_COMPILER_GCC) && (NCBI_COMPILER_VERSION >= 900) -+#if defined(NCBI_COMPILER_GCC) && (NCBI_COMPILER_VERSION >= 900) || \ + #if (defined(NCBI_COMPILER_GCC) && (NCBI_COMPILER_VERSION >= 900)) || \ +- (defined(NCBI_COMPILER_ICC) && (NCBI_COMPILER_VERSION >= 2100)) ++ (defined(NCBI_COMPILER_ICC) && (NCBI_COMPILER_VERSION >= 2100)) || \ + defined(NCBI_COMPILER_LLVM_CLANG) #pragma omp parallel default(none) num_threads(m_DbHandles.size()) \ shared(oids2iterate,kScanUncompressed) if(m_DbHandles.size() > 1) #else -@@ -208,7 +209,8 @@ CSeqDBPerfApp::x_InitApplicationData() - +@@ -210,7 +211,8 @@ CSeqDBPerfApp::x_InitApplicationData() if (args["multi_threaded_creation"]) { --#if defined(NCBI_COMPILER_GCC) && (NCBI_COMPILER_VERSION >= 900) -+#if defined(NCBI_COMPILER_GCC) && (NCBI_COMPILER_VERSION >= 900) || \ + #if (defined(NCBI_COMPILER_GCC) && (NCBI_COMPILER_VERSION >= 900)) || \ +- (defined(NCBI_COMPILER_ICC) && (NCBI_COMPILER_VERSION >= 2100)) ++ (defined(NCBI_COMPILER_ICC) && (NCBI_COMPILER_VERSION >= 2100)) || + defined(NCBI_COMPILER_LLVM_CLANG) #pragma omp parallel default(none) shared(kDbName, kNumThreads, kSeqType) num_threads(kNumThreads) #else diff --git a/biology/ncbi-blast+/pkg-plist b/biology/ncbi-blast+/pkg-plist index db5c2ec247a9..a432cd175519 100644 --- a/biology/ncbi-blast+/pkg-plist +++ b/biology/ncbi-blast+/pkg-plist @@ -20,6 +20,7 @@ bin/get_species_taxids.sh bin/legacy_blast.pl bin/lmdbxx_sample bin/makeblastdb +bin/makeclusterdb bin/makembindex bin/makeprofiledb bin/project_tree_builder @@ -30,7 +31,6 @@ bin/run_with_lock bin/seedtop bin/segmasker bin/seqdb_demo -bin/seqdb_perf bin/tblastn bin/tblastx bin/update_blastdb.pl @@ -211,6 +211,12 @@ include/ncbi-tools++/algo/blast/proteinkmer/blastkmerresults.hpp include/ncbi-tools++/algo/blast/proteinkmer/blastkmerutils.hpp include/ncbi-tools++/algo/blast/proteinkmer/kblastapi.hpp include/ncbi-tools++/algo/blast/proteinkmer/mhfile.hpp +include/ncbi-tools++/algo/blast/vdb/blastn_vdb_args.hpp +include/ncbi-tools++/algo/blast/vdb/seqsrc_vdb.h +include/ncbi-tools++/algo/blast/vdb/tblastn_vdb_args.hpp +include/ncbi-tools++/algo/blast/vdb/vdb2blast_util.hpp +include/ncbi-tools++/algo/blast/vdb/vdbalias.hpp +include/ncbi-tools++/algo/blast/vdb/vdbblast_local.hpp include/ncbi-tools++/algo/dustmask/sdust.tex include/ncbi-tools++/algo/dustmask/symdust.hpp include/ncbi-tools++/algo/segmask/segmask.hpp @@ -257,6 +263,7 @@ include/ncbi-tools++/cgi/cgiapp.hpp include/ncbi-tools++/cgi/cgiapp_cached.hpp include/ncbi-tools++/cgi/cgictx.hpp include/ncbi-tools++/cgi/error_codes.hpp +include/ncbi-tools++/cgi/fcgiapp_mt.hpp include/ncbi-tools++/cgi/impl/cgi_entry_reader.hpp include/ncbi-tools++/cgi/ncbicgi.hpp include/ncbi-tools++/cgi/ncbicgir.hpp @@ -277,6 +284,7 @@ include/ncbi-tools++/common/ncbi_package_ver.h include/ncbi-tools++/common/ncbi_pch_impl.hpp include/ncbi-tools++/common/ncbi_revision.h include/ncbi-tools++/common/ncbi_sanitizers.h +include/ncbi-tools++/common/ncbi_sc_version.h include/ncbi-tools++/common/ncbi_skew_guard.h include/ncbi-tools++/common/ncbi_source_ver.cmake_nodep include/ncbi-tools++/common/ncbi_source_ver.h @@ -549,40 +557,10 @@ include/ncbi-tools++/html/page.hpp include/ncbi-tools++/html/pager.hpp include/ncbi-tools++/html/selection.hpp include/ncbi-tools++/html/writer_htmlenc.hpp +include/ncbi-tools++/misc/drmaa2.hpp include/ncbi-tools++/misc/error_codes.hpp include/ncbi-tools++/misc/jsonwrapp/jsonwrapp.hpp -include/ncbi-tools++/misc/jsonwrapp/jsonwrapp10.hpp include/ncbi-tools++/misc/jsonwrapp/jsonwrapp11.hpp -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/__NCBI_read_me.txt -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/allocators.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/document.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/encodedstream.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/encodings.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/error/en.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/error/error.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/filereadstream.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/filewritestream.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/biginteger.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/diyfp.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/dtoa.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/ieee754.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/itoa.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/meta.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/pow10.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/stack.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/strfunc.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/strtod.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/license.txt -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/memorybuffer.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/memorystream.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/msinttypes/inttypes.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/msinttypes/stdint.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/pointer.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/prettywriter.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/rapidjson.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/reader.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/stringbuffer.h -include/ncbi-tools++/misc/jsonwrapp/rapidjson10/writer.h include/ncbi-tools++/misc/jsonwrapp/rapidjson11/__NCBI_read_me.txt include/ncbi-tools++/misc/jsonwrapp/rapidjson11/allocators.h include/ncbi-tools++/misc/jsonwrapp/rapidjson11/document.h @@ -625,13 +603,11 @@ include/ncbi-tools++/ncbi_random_macro.h include/ncbi-tools++/ncbi_source_ver.h include/ncbi-tools++/ncbiconf.h include/ncbi-tools++/ncbiconf_unix.h -include/ncbi-tools++/objects/access/.cvsignore include/ncbi-tools++/objects/access/.gitignore include/ncbi-tools++/objects/access/Link_set.hpp include/ncbi-tools++/objects/access/Link_set_.hpp include/ncbi-tools++/objects/access/NCBI_Access_module.hpp include/ncbi-tools++/objects/access/access__.hpp -include/ncbi-tools++/objects/biblio/.cvsignore include/ncbi-tools++/objects/biblio/.gitignore include/ncbi-tools++/objects/biblio/Affil.hpp include/ncbi-tools++/objects/biblio/Affil_.hpp @@ -695,7 +671,6 @@ include/ncbi-tools++/objects/biblio/Title_.hpp include/ncbi-tools++/objects/biblio/biblio__.hpp include/ncbi-tools++/objects/biblio/biblio_macros.hpp include/ncbi-tools++/objects/biblio/citation_base.hpp -include/ncbi-tools++/objects/biotree/.cvsignore include/ncbi-tools++/objects/biotree/.gitignore include/ncbi-tools++/objects/biotree/BioTreeContainer.hpp include/ncbi-tools++/objects/biotree/BioTreeContainer_.hpp @@ -715,7 +690,6 @@ include/ncbi-tools++/objects/biotree/NodeSet.hpp include/ncbi-tools++/objects/biotree/NodeSet_.hpp include/ncbi-tools++/objects/biotree/Node_.hpp include/ncbi-tools++/objects/biotree/biotree__.hpp -include/ncbi-tools++/objects/blast/.cvsignore include/ncbi-tools++/objects/blast/.gitignore include/ncbi-tools++/objects/blast/Blas_get_searc_resul_reply.hpp include/ncbi-tools++/objects/blast/Blas_get_searc_resul_reply_.hpp @@ -846,10 +820,11 @@ include/ncbi-tools++/objects/blast/blast__.hpp include/ncbi-tools++/objects/blast/blastclient.hpp include/ncbi-tools++/objects/blast/blastclient_.hpp include/ncbi-tools++/objects/blast/names.hpp -include/ncbi-tools++/objects/blastdb/.cvsignore include/ncbi-tools++/objects/blastdb/.gitignore include/ncbi-tools++/objects/blastdb/Blast_db_mask_info.hpp include/ncbi-tools++/objects/blastdb/Blast_db_mask_info_.hpp +include/ncbi-tools++/objects/blastdb/Blast_db_metadata.hpp +include/ncbi-tools++/objects/blastdb/Blast_db_metadata_.hpp include/ncbi-tools++/objects/blastdb/Blast_def_line.hpp include/ncbi-tools++/objects/blastdb/Blast_def_line_.hpp include/ncbi-tools++/objects/blastdb/Blast_def_line_set.hpp @@ -861,7 +836,6 @@ include/ncbi-tools++/objects/blastdb/Blast_mask_list_.hpp include/ncbi-tools++/objects/blastdb/NCBI_BlastDL_module.hpp include/ncbi-tools++/objects/blastdb/blastdb__.hpp include/ncbi-tools++/objects/blastdb/defline_extra.hpp -include/ncbi-tools++/objects/blastxml/.cvsignore include/ncbi-tools++/objects/blastxml/.gitignore include/ncbi-tools++/objects/blastxml/BlastOutput.hpp include/ncbi-tools++/objects/blastxml/BlastOutput_.hpp @@ -877,7 +851,6 @@ include/ncbi-tools++/objects/blastxml/Parameters_.hpp include/ncbi-tools++/objects/blastxml/Statistics.hpp include/ncbi-tools++/objects/blastxml/Statistics_.hpp include/ncbi-tools++/objects/blastxml/blastxml__.hpp -include/ncbi-tools++/objects/blastxml2/.cvsignore include/ncbi-tools++/objects/blastxml2/.gitignore include/ncbi-tools++/objects/blastxml2/BlastOutput2.hpp include/ncbi-tools++/objects/blastxml2/BlastOutput2_.hpp @@ -909,7 +882,6 @@ include/ncbi-tools++/objects/blastxml2/Statistics_.hpp include/ncbi-tools++/objects/blastxml2/Target.hpp include/ncbi-tools++/objects/blastxml2/Target_.hpp include/ncbi-tools++/objects/blastxml2/blastxml2__.hpp -include/ncbi-tools++/objects/cdd/.cvsignore include/ncbi-tools++/objects/cdd/.gitignore include/ncbi-tools++/objects/cdd/Algorithm_type.hpp include/ncbi-tools++/objects/cdd/Algorithm_type_.hpp @@ -979,7 +951,6 @@ include/ncbi-tools++/objects/cdd/Update_align_.hpp include/ncbi-tools++/objects/cdd/Update_comment.hpp include/ncbi-tools++/objects/cdd/Update_comment_.hpp include/ncbi-tools++/objects/cdd/cdd__.hpp -include/ncbi-tools++/objects/cn3d/.cvsignore include/ncbi-tools++/objects/cn3d/.gitignore include/ncbi-tools++/objects/cn3d/Cn3d_GL_matrix.hpp include/ncbi-tools++/objects/cn3d/Cn3d_GL_matrix_.hpp @@ -1023,7 +994,6 @@ include/ncbi-tools++/objects/cn3d/Cn3d_view_settings.hpp include/ncbi-tools++/objects/cn3d/Cn3d_view_settings_.hpp include/ncbi-tools++/objects/cn3d/NCBI_Cn3d_module.hpp include/ncbi-tools++/objects/cn3d/cn3d__.hpp -include/ncbi-tools++/objects/coords/.cvsignore include/ncbi-tools++/objects/coords/.gitignore include/ncbi-tools++/objects/coords/HGVS_Coordinate.hpp include/ncbi-tools++/objects/coords/HGVS_Coordinate_.hpp @@ -1036,7 +1006,6 @@ include/ncbi-tools++/objects/dbsnp/primary_track/dbsnp.pb.h include/ncbi-tools++/objects/dbsnp/primary_track/dbsnp_mock.grpc.pb.h include/ncbi-tools++/objects/dbsnp/primary_track/impl/snpptis_impl.hpp include/ncbi-tools++/objects/dbsnp/primary_track/snpptis.hpp -include/ncbi-tools++/objects/docsum/.cvsignore include/ncbi-tools++/objects/docsum/.gitignore include/ncbi-tools++/objects/docsum/Assay.hpp include/ncbi-tools++/objects/docsum/Assay_.hpp @@ -1064,7 +1033,6 @@ include/ncbi-tools++/objects/docsum/Rs_.hpp include/ncbi-tools++/objects/docsum/Ss.hpp include/ncbi-tools++/objects/docsum/Ss_.hpp include/ncbi-tools++/objects/docsum/docsum__.hpp -include/ncbi-tools++/objects/entrez2/.cvsignore include/ncbi-tools++/objects/entrez2/.gitignore include/ncbi-tools++/objects/entrez2/E2Reply.hpp include/ncbi-tools++/objects/entrez2/E2Reply_.hpp @@ -1144,7 +1112,6 @@ include/ncbi-tools++/objects/entrez2/NCBI_Entrez2_module.hpp include/ncbi-tools++/objects/entrez2/entrez2__.hpp include/ncbi-tools++/objects/entrez2/entrez2_client.hpp include/ncbi-tools++/objects/entrez2/entrez2_client_.hpp -include/ncbi-tools++/objects/entrezgene/.cvsignore include/ncbi-tools++/objects/entrezgene/.gitignore include/ncbi-tools++/objects/entrezgene/Entrezgene.hpp include/ncbi-tools++/objects/entrezgene/Entrezgene_.hpp @@ -1164,7 +1131,6 @@ include/ncbi-tools++/objects/entrezgene/Other_source_.hpp include/ncbi-tools++/objects/entrezgene/Xtra_Terms.hpp include/ncbi-tools++/objects/entrezgene/Xtra_Terms_.hpp include/ncbi-tools++/objects/entrezgene/entrezgene__.hpp -include/ncbi-tools++/objects/featdef/.cvsignore include/ncbi-tools++/objects/featdef/.gitignore include/ncbi-tools++/objects/featdef/FeatDef.hpp include/ncbi-tools++/objects/featdef/FeatDefGroupSet.hpp @@ -1180,7 +1146,6 @@ include/ncbi-tools++/objects/featdef/FeatMolType.hpp include/ncbi-tools++/objects/featdef/FeatMolType_.hpp include/ncbi-tools++/objects/featdef/NCBI_FeatDef_module.hpp include/ncbi-tools++/objects/featdef/featdef__.hpp -include/ncbi-tools++/objects/gbproj/.cvsignore include/ncbi-tools++/objects/gbproj/.gitignore include/ncbi-tools++/objects/gbproj/AbstractProjectItem.hpp include/ncbi-tools++/objects/gbproj/AbstractProjectItem_.hpp @@ -1212,7 +1177,6 @@ include/ncbi-tools++/objects/gbproj/ViewMemento_.hpp include/ncbi-tools++/objects/gbproj/gbproj__.hpp include/ncbi-tools++/objects/gbproj/gbproj_export.h include/ncbi-tools++/objects/gbproj/igbproject.hpp -include/ncbi-tools++/objects/gbseq/.cvsignore include/ncbi-tools++/objects/gbseq/.gitignore include/ncbi-tools++/objects/gbseq/GBAltSeqData.hpp include/ncbi-tools++/objects/gbseq/GBAltSeqData_.hpp @@ -1252,7 +1216,6 @@ include/ncbi-tools++/objects/gbseq/GBXref.hpp include/ncbi-tools++/objects/gbseq/GBXref_.hpp include/ncbi-tools++/objects/gbseq/NCBI_GBSeq_module.hpp include/ncbi-tools++/objects/gbseq/gbseq__.hpp -include/ncbi-tools++/objects/general/.cvsignore include/ncbi-tools++/objects/general/.gitignore include/ncbi-tools++/objects/general/Date.hpp include/ncbi-tools++/objects/general/Date_.hpp @@ -1277,7 +1240,6 @@ include/ncbi-tools++/objects/general/general__.hpp include/ncbi-tools++/objects/general/general_exception.hpp include/ncbi-tools++/objects/general/general_macros.hpp include/ncbi-tools++/objects/general/uoconv.hpp -include/ncbi-tools++/objects/genesbyloc/.cvsignore include/ncbi-tools++/objects/genesbyloc/.gitignore include/ncbi-tools++/objects/genesbyloc/GBL_Data.hpp include/ncbi-tools++/objects/genesbyloc/GBL_Data_.hpp @@ -1287,7 +1249,6 @@ include/ncbi-tools++/objects/genesbyloc/GBL_Reply.hpp include/ncbi-tools++/objects/genesbyloc/GBL_Reply_.hpp include/ncbi-tools++/objects/genesbyloc/NCBI_GenesByLoc_module.hpp include/ncbi-tools++/objects/genesbyloc/genesbyloc__.hpp -include/ncbi-tools++/objects/genomecoll/.cvsignore include/ncbi-tools++/objects/genomecoll/.gitignore include/ncbi-tools++/objects/genomecoll/GCClientRequest.hpp include/ncbi-tools++/objects/genomecoll/GCClientRequest_.hpp @@ -1360,7 +1321,6 @@ include/ncbi-tools++/objects/genomecoll/gencoll_client__.hpp include/ncbi-tools++/objects/genomecoll/genome_collection__.hpp include/ncbi-tools++/objects/genomecoll/genomic_collections_cli.hpp include/ncbi-tools++/objects/genomecoll/genomic_collections_cli_.hpp -include/ncbi-tools++/objects/homologene/.cvsignore include/ncbi-tools++/objects/homologene/.gitignore include/ncbi-tools++/objects/homologene/HG_Alignment.hpp include/ncbi-tools++/objects/homologene/HG_AlignmentSet.hpp @@ -1390,7 +1350,6 @@ include/ncbi-tools++/objects/homologene/HG_Stats.hpp include/ncbi-tools++/objects/homologene/HG_Stats_.hpp include/ncbi-tools++/objects/homologene/HomoloGene_module.hpp include/ncbi-tools++/objects/homologene/homologene__.hpp -include/ncbi-tools++/objects/id1/.cvsignore include/ncbi-tools++/objects/id1/.gitignore include/ncbi-tools++/objects/id1/Entry_complexities.hpp include/ncbi-tools++/objects/id1/Entry_complexities_.hpp @@ -1412,7 +1371,6 @@ include/ncbi-tools++/objects/id1/NCBI_ID1Access_module.hpp include/ncbi-tools++/objects/id1/id1__.hpp include/ncbi-tools++/objects/id1/id1_client.hpp include/ncbi-tools++/objects/id1/id1_client_.hpp -include/ncbi-tools++/objects/id2/.cvsignore include/ncbi-tools++/objects/id2/.gitignore include/ncbi-tools++/objects/id2/ID2S_Reply_Get_Chunk.hpp include/ncbi-tools++/objects/id2/ID2S_Reply_Get_Chunk_.hpp @@ -1474,7 +1432,6 @@ include/ncbi-tools++/objects/id2/id2_client.hpp include/ncbi-tools++/objects/id2/id2_client_.hpp include/ncbi-tools++/objects/id2/id2processor.hpp include/ncbi-tools++/objects/id2/id2processor_interface.hpp -include/ncbi-tools++/objects/insdseq/.cvsignore include/ncbi-tools++/objects/insdseq/.gitignore include/ncbi-tools++/objects/insdseq/INSDAltSeqData.hpp include/ncbi-tools++/objects/insdseq/INSDAltSeqData_.hpp @@ -1514,7 +1471,6 @@ include/ncbi-tools++/objects/insdseq/INSDXref.hpp include/ncbi-tools++/objects/insdseq/INSDXref_.hpp include/ncbi-tools++/objects/insdseq/INSD_INSDSeq_module.hpp include/ncbi-tools++/objects/insdseq/insdseq__.hpp -include/ncbi-tools++/objects/macro/.cvsignore include/ncbi-tools++/objects/macro/.gitignore include/ncbi-tools++/objects/macro/AECRParse_action.hpp include/ncbi-tools++/objects/macro/AECRParse_action_.hpp @@ -1876,7 +1832,6 @@ include/ncbi-tools++/objects/macro/Word_substitution_set_.hpp include/ncbi-tools++/objects/macro/Xref_type.hpp include/ncbi-tools++/objects/macro/Xref_type_.hpp include/ncbi-tools++/objects/macro/macro__.hpp -include/ncbi-tools++/objects/medlars/.cvsignore include/ncbi-tools++/objects/medlars/.gitignore include/ncbi-tools++/objects/medlars/Medlars_entry.hpp include/ncbi-tools++/objects/medlars/Medlars_entry_.hpp @@ -1884,7 +1839,6 @@ include/ncbi-tools++/objects/medlars/Medlars_record.hpp include/ncbi-tools++/objects/medlars/Medlars_record_.hpp include/ncbi-tools++/objects/medlars/NCBI_Medlars_module.hpp include/ncbi-tools++/objects/medlars/medlars__.hpp -include/ncbi-tools++/objects/medline/.cvsignore include/ncbi-tools++/objects/medline/.gitignore include/ncbi-tools++/objects/medline/DocRef.hpp include/ncbi-tools++/objects/medline/DocRef_.hpp @@ -1902,7 +1856,6 @@ include/ncbi-tools++/objects/medline/Medline_si.hpp include/ncbi-tools++/objects/medline/Medline_si_.hpp include/ncbi-tools++/objects/medline/NCBI_Medline_module.hpp include/ncbi-tools++/objects/medline/medline__.hpp -include/ncbi-tools++/objects/mim/.cvsignore include/ncbi-tools++/objects/mim/.gitignore include/ncbi-tools++/objects/mim/Mim_allelic_variant.hpp include/ncbi-tools++/objects/mim/Mim_allelic_variant_.hpp @@ -1935,7 +1888,6 @@ include/ncbi-tools++/objects/mim/mim__.hpp include/ncbi-tools++/objects/misc/error_codes.hpp include/ncbi-tools++/objects/misc/sequence_macros.hpp include/ncbi-tools++/objects/misc/sequence_util_macros.hpp -include/ncbi-tools++/objects/mla/.cvsignore include/ncbi-tools++/objects/mla/.gitignore include/ncbi-tools++/objects/mla/Error_val.hpp include/ncbi-tools++/objects/mla/Error_val_.hpp @@ -1953,7 +1905,6 @@ include/ncbi-tools++/objects/mla/Title_type_.hpp include/ncbi-tools++/objects/mla/mla__.hpp include/ncbi-tools++/objects/mla/mla_client.hpp include/ncbi-tools++/objects/mla/mla_client_.hpp -include/ncbi-tools++/objects/mmdb1/.cvsignore include/ncbi-tools++/objects/mmdb1/.gitignore include/ncbi-tools++/objects/mmdb1/Atom.hpp include/ncbi-tools++/objects/mmdb1/Atom_.hpp @@ -2016,7 +1967,6 @@ include/ncbi-tools++/objects/mmdb1/Residue_graph_pntr_.hpp include/ncbi-tools++/objects/mmdb1/Residue_id.hpp include/ncbi-tools++/objects/mmdb1/Residue_id_.hpp include/ncbi-tools++/objects/mmdb1/mmdb1__.hpp -include/ncbi-tools++/objects/mmdb2/.cvsignore include/ncbi-tools++/objects/mmdb2/.gitignore include/ncbi-tools++/objects/mmdb2/Alternate_conformation_id.hpp include/ncbi-tools++/objects/mmdb2/Alternate_conformation_id_.hpp @@ -2064,7 +2014,6 @@ include/ncbi-tools++/objects/mmdb2/T_mesh_.hpp include/ncbi-tools++/objects/mmdb2/Triangles.hpp include/ncbi-tools++/objects/mmdb2/Triangles_.hpp include/ncbi-tools++/objects/mmdb2/mmdb2__.hpp -include/ncbi-tools++/objects/mmdb3/.cvsignore include/ncbi-tools++/objects/mmdb3/.gitignore include/ncbi-tools++/objects/mmdb3/Align_stats.hpp include/ncbi-tools++/objects/mmdb3/Align_stats_.hpp @@ -2142,7 +2091,6 @@ include/ncbi-tools++/objects/mmdb3/Trans_matrix_.hpp include/ncbi-tools++/objects/mmdb3/Transform.hpp include/ncbi-tools++/objects/mmdb3/Transform_.hpp include/ncbi-tools++/objects/mmdb3/mmdb3__.hpp -include/ncbi-tools++/objects/ncbimime/.cvsignore include/ncbi-tools++/objects/ncbimime/.gitignore include/ncbi-tools++/objects/ncbimime/Biostruc_align.hpp include/ncbi-tools++/objects/ncbimime/Biostruc_align_.hpp @@ -2164,7 +2112,6 @@ include/ncbi-tools++/objects/ncbimime/NCBI_Mime_module.hpp include/ncbi-tools++/objects/ncbimime/Ncbi_mime_asn1.hpp include/ncbi-tools++/objects/ncbimime/Ncbi_mime_asn1_.hpp include/ncbi-tools++/objects/ncbimime/ncbimime__.hpp -include/ncbi-tools++/objects/objprt/.cvsignore include/ncbi-tools++/objects/objprt/.gitignore include/ncbi-tools++/objects/objprt/NCBI_ObjPrt_module.hpp include/ncbi-tools++/objects/objprt/PrintForm.hpp @@ -2188,7 +2135,6 @@ include/ncbi-tools++/objects/objprt/TemplateName_.hpp include/ncbi-tools++/objects/objprt/UserFormat.hpp include/ncbi-tools++/objects/objprt/UserFormat_.hpp include/ncbi-tools++/objects/objprt/objprt__.hpp -include/ncbi-tools++/objects/omssa/.cvsignore include/ncbi-tools++/objects/omssa/.gitignore include/ncbi-tools++/objects/omssa/MSBioseq.hpp include/ncbi-tools++/objects/omssa/MSBioseqSet.hpp @@ -2276,7 +2222,6 @@ include/ncbi-tools++/objects/omssa/NameValue.hpp include/ncbi-tools++/objects/omssa/NameValue_.hpp include/ncbi-tools++/objects/omssa/OMSSA_module.hpp include/ncbi-tools++/objects/omssa/omssa__.hpp -include/ncbi-tools++/objects/pcassay/.cvsignore include/ncbi-tools++/objects/pcassay/.gitignore include/ncbi-tools++/objects/pcassay/NCBI_PCAssay_module.hpp include/ncbi-tools++/objects/pcassay/PC_AnnotatedXRef.hpp @@ -2312,7 +2257,35 @@ include/ncbi-tools++/objects/pcassay/PC_RealMinMax_.hpp include/ncbi-tools++/objects/pcassay/PC_ResultType.hpp include/ncbi-tools++/objects/pcassay/PC_ResultType_.hpp include/ncbi-tools++/objects/pcassay/pcassay__.hpp -include/ncbi-tools++/objects/pcsubstance/.cvsignore +include/ncbi-tools++/objects/pcassay2/.gitignore +include/ncbi-tools++/objects/pcassay2/NCBI_PCAssay2_module.hpp +include/ncbi-tools++/objects/pcassay2/PC_AnnotatedXRef.hpp +include/ncbi-tools++/objects/pcassay2/PC_AnnotatedXRef_.hpp +include/ncbi-tools++/objects/pcassay2/PC_AssayContainer.hpp +include/ncbi-tools++/objects/pcassay2/PC_AssayContainer_.hpp +include/ncbi-tools++/objects/pcassay2/PC_AssayDRAttr.hpp +include/ncbi-tools++/objects/pcassay2/PC_AssayDRAttr_.hpp +include/ncbi-tools++/objects/pcassay2/PC_AssayData.hpp +include/ncbi-tools++/objects/pcassay2/PC_AssayData_.hpp +include/ncbi-tools++/objects/pcassay2/PC_AssayDescription.hpp +include/ncbi-tools++/objects/pcassay2/PC_AssayDescription_.hpp +include/ncbi-tools++/objects/pcassay2/PC_AssayResults.hpp +include/ncbi-tools++/objects/pcassay2/PC_AssayResults_.hpp +include/ncbi-tools++/objects/pcassay2/PC_AssaySubmit.hpp +include/ncbi-tools++/objects/pcassay2/PC_AssaySubmit_.hpp +include/ncbi-tools++/objects/pcassay2/PC_AssayTargetInfo.hpp +include/ncbi-tools++/objects/pcassay2/PC_AssayTargetInfo_.hpp +include/ncbi-tools++/objects/pcassay2/PC_CategorizedComment.hpp +include/ncbi-tools++/objects/pcassay2/PC_CategorizedComment_.hpp +include/ncbi-tools++/objects/pcassay2/PC_ConcentrationAttr.hpp +include/ncbi-tools++/objects/pcassay2/PC_ConcentrationAttr_.hpp +include/ncbi-tools++/objects/pcassay2/PC_IntegerMinMax.hpp +include/ncbi-tools++/objects/pcassay2/PC_IntegerMinMax_.hpp +include/ncbi-tools++/objects/pcassay2/PC_RealMinMax.hpp +include/ncbi-tools++/objects/pcassay2/PC_RealMinMax_.hpp +include/ncbi-tools++/objects/pcassay2/PC_ResultType.hpp +include/ncbi-tools++/objects/pcassay2/PC_ResultType_.hpp +include/ncbi-tools++/objects/pcassay2/pcassay2__.hpp include/ncbi-tools++/objects/pcsubstance/.gitignore include/ncbi-tools++/objects/pcsubstance/NCBI_PCSubstance_module.hpp include/ncbi-tools++/objects/pcsubstance/PC_AtomInt.hpp @@ -2331,6 +2304,8 @@ include/ncbi-tools++/objects/pcsubstance/PC_BondType.hpp include/ncbi-tools++/objects/pcsubstance/PC_BondType_.hpp include/ncbi-tools++/objects/pcsubstance/PC_Bonds.hpp include/ncbi-tools++/objects/pcsubstance/PC_Bonds_.hpp +include/ncbi-tools++/objects/pcsubstance/PC_Bracket.hpp +include/ncbi-tools++/objects/pcsubstance/PC_Bracket_.hpp include/ncbi-tools++/objects/pcsubstance/PC_Compound.hpp include/ncbi-tools++/objects/pcsubstance/PC_CompoundType.hpp include/ncbi-tools++/objects/pcsubstance/PC_CompoundType_.hpp @@ -2353,6 +2328,8 @@ include/ncbi-tools++/objects/pcsubstance/PC_DrawAnnotations.hpp include/ncbi-tools++/objects/pcsubstance/PC_DrawAnnotations_.hpp include/ncbi-tools++/objects/pcsubstance/PC_Element.hpp include/ncbi-tools++/objects/pcsubstance/PC_Element_.hpp +include/ncbi-tools++/objects/pcsubstance/PC_Group.hpp +include/ncbi-tools++/objects/pcsubstance/PC_Group_.hpp include/ncbi-tools++/objects/pcsubstance/PC_ID.hpp include/ncbi-tools++/objects/pcsubstance/PC_ID_.hpp include/ncbi-tools++/objects/pcsubstance/PC_InfoData.hpp @@ -2390,7 +2367,6 @@ include/ncbi-tools++/objects/pcsubstance/PC_Urn_.hpp include/ncbi-tools++/objects/pcsubstance/PC_XRefData.hpp include/ncbi-tools++/objects/pcsubstance/PC_XRefData_.hpp include/ncbi-tools++/objects/pcsubstance/pcsubstance__.hpp -include/ncbi-tools++/objects/proj/.cvsignore include/ncbi-tools++/objects/proj/.gitignore include/ncbi-tools++/objects/proj/NCBI_Project_module.hpp include/ncbi-tools++/objects/proj/Projdesc.hpp @@ -2404,7 +2380,6 @@ include/ncbi-tools++/objects/proj/Project_id_.hpp include/ncbi-tools++/objects/proj/Project_item.hpp include/ncbi-tools++/objects/proj/Project_item_.hpp include/ncbi-tools++/objects/proj/proj__.hpp -include/ncbi-tools++/objects/pub/.cvsignore include/ncbi-tools++/objects/pub/.gitignore include/ncbi-tools++/objects/pub/NCBI_Pub_module.hpp include/ncbi-tools++/objects/pub/Pub.hpp @@ -2415,7 +2390,6 @@ include/ncbi-tools++/objects/pub/Pub_set.hpp include/ncbi-tools++/objects/pub/Pub_set_.hpp include/ncbi-tools++/objects/pub/pub__.hpp include/ncbi-tools++/objects/pub/pub_macros.hpp -include/ncbi-tools++/objects/pubmed/.cvsignore include/ncbi-tools++/objects/pubmed/.gitignore include/ncbi-tools++/objects/pubmed/NCBI_PubMed_module.hpp include/ncbi-tools++/objects/pubmed/Pubmed_entry.hpp @@ -2423,7 +2397,6 @@ include/ncbi-tools++/objects/pubmed/Pubmed_entry_.hpp include/ncbi-tools++/objects/pubmed/Pubmed_url.hpp include/ncbi-tools++/objects/pubmed/Pubmed_url_.hpp include/ncbi-tools++/objects/pubmed/pubmed__.hpp -include/ncbi-tools++/objects/remap/.cvsignore include/ncbi-tools++/objects/remap/.gitignore include/ncbi-tools++/objects/remap/NCBI_Remap_module.hpp include/ncbi-tools++/objects/remap/RMReply.hpp @@ -2445,7 +2418,6 @@ include/ncbi-tools++/objects/remap/Remap_result_.hpp include/ncbi-tools++/objects/remap/remap__.hpp include/ncbi-tools++/objects/remap/remap_client.hpp include/ncbi-tools++/objects/remap/remap_client_.hpp -include/ncbi-tools++/objects/scoremat/.cvsignore include/ncbi-tools++/objects/scoremat/.gitignore include/ncbi-tools++/objects/scoremat/BlockProperty.hpp include/ncbi-tools++/objects/scoremat/BlockProperty_.hpp @@ -2473,7 +2445,6 @@ include/ncbi-tools++/objects/scoremat/Site_annot_.hpp include/ncbi-tools++/objects/scoremat/Site_annot_set.hpp include/ncbi-tools++/objects/scoremat/Site_annot_set_.hpp include/ncbi-tools++/objects/scoremat/scoremat__.hpp -include/ncbi-tools++/objects/seq/.cvsignore include/ncbi-tools++/objects/seq/.gitignore include/ncbi-tools++/objects/seq/Align_def.hpp include/ncbi-tools++/objects/seq/Align_def_.hpp @@ -2575,7 +2546,6 @@ include/ncbi-tools++/objects/seq/seqlocinfo.hpp include/ncbi-tools++/objects/seq/seqport_util.hpp include/ncbi-tools++/objects/seq/so_map.hpp include/ncbi-tools++/objects/seq/sofa_type.hpp -include/ncbi-tools++/objects/seqalign/.cvsignore include/ncbi-tools++/objects/seqalign/.gitignore include/ncbi-tools++/objects/seqalign/Dense_diag.hpp include/ncbi-tools++/objects/seqalign/Dense_diag_.hpp @@ -2617,7 +2587,6 @@ include/ncbi-tools++/objects/seqalign/Std_seg_.hpp include/ncbi-tools++/objects/seqalign/seqalign__.hpp include/ncbi-tools++/objects/seqalign/seqalign_exception.hpp include/ncbi-tools++/objects/seqalign/seqalign_macros.hpp -include/ncbi-tools++/objects/seqblock/.cvsignore include/ncbi-tools++/objects/seqblock/.gitignore include/ncbi-tools++/objects/seqblock/EMBL_General_module.hpp include/ncbi-tools++/objects/seqblock/EMBL_block.hpp @@ -2647,7 +2616,6 @@ include/ncbi-tools++/objects/seqblock/SP_block.hpp include/ncbi-tools++/objects/seqblock/SP_block_.hpp include/ncbi-tools++/objects/seqblock/seqblock__.hpp include/ncbi-tools++/objects/seqblock/seqblock_macros.hpp -include/ncbi-tools++/objects/seqcode/.cvsignore include/ncbi-tools++/objects/seqcode/.gitignore include/ncbi-tools++/objects/seqcode/NCBI_SeqCode_module.hpp include/ncbi-tools++/objects/seqcode/Seq_code_set.hpp @@ -2659,7 +2627,6 @@ include/ncbi-tools++/objects/seqcode/Seq_code_type_.hpp include/ncbi-tools++/objects/seqcode/Seq_map_table.hpp include/ncbi-tools++/objects/seqcode/Seq_map_table_.hpp include/ncbi-tools++/objects/seqcode/seqcode__.hpp -include/ncbi-tools++/objects/seqedit/.cvsignore include/ncbi-tools++/objects/seqedit/.gitignore include/ncbi-tools++/objects/seqedit/NCBI_SeqEdit_module.hpp include/ncbi-tools++/objects/seqedit/SeqEdit_Cmd.hpp @@ -2709,7 +2676,6 @@ include/ncbi-tools++/objects/seqedit/SeqEdit_Cmd_SetDescr_.hpp include/ncbi-tools++/objects/seqedit/SeqEdit_Id.hpp include/ncbi-tools++/objects/seqedit/SeqEdit_Id_.hpp include/ncbi-tools++/objects/seqedit/seqedit__.hpp -include/ncbi-tools++/objects/seqfeat/.cvsignore include/ncbi-tools++/objects/seqfeat/.gitignore include/ncbi-tools++/objects/seqfeat/BinomialOrgName.hpp include/ncbi-tools++/objects/seqfeat/BinomialOrgName_.hpp @@ -2831,7 +2797,6 @@ include/ncbi-tools++/objects/seqfeat/Variation_ref.hpp include/ncbi-tools++/objects/seqfeat/Variation_ref_.hpp include/ncbi-tools++/objects/seqfeat/seqfeat__.hpp include/ncbi-tools++/objects/seqfeat/seqfeat_macros.hpp -include/ncbi-tools++/objects/seqloc/.cvsignore include/ncbi-tools++/objects/seqloc/.gitignore include/ncbi-tools++/objects/seqloc/Giimport_id.hpp include/ncbi-tools++/objects/seqloc/Giimport_id_.hpp @@ -2868,7 +2833,6 @@ include/ncbi-tools++/objects/seqloc/Textseq_id.hpp include/ncbi-tools++/objects/seqloc/Textseq_id_.hpp include/ncbi-tools++/objects/seqloc/seqloc__.hpp include/ncbi-tools++/objects/seqloc/seqloc_macros.hpp -include/ncbi-tools++/objects/seqres/.cvsignore include/ncbi-tools++/objects/seqres/.gitignore include/ncbi-tools++/objects/seqres/Byte_graph.hpp include/ncbi-tools++/objects/seqres/Byte_graph_.hpp @@ -2880,7 +2844,6 @@ include/ncbi-tools++/objects/seqres/Real_graph_.hpp include/ncbi-tools++/objects/seqres/Seq_graph.hpp include/ncbi-tools++/objects/seqres/Seq_graph_.hpp include/ncbi-tools++/objects/seqres/seqres__.hpp -include/ncbi-tools++/objects/seqset/.cvsignore include/ncbi-tools++/objects/seqset/.gitignore include/ncbi-tools++/objects/seqset/Bioseq_set.hpp include/ncbi-tools++/objects/seqset/Bioseq_set_.hpp @@ -2891,7 +2854,6 @@ include/ncbi-tools++/objects/seqset/gb_release_file.hpp include/ncbi-tools++/objects/seqset/seqset__.hpp include/ncbi-tools++/objects/seqset/seqset_exception.hpp include/ncbi-tools++/objects/seqset/seqset_macros.hpp -include/ncbi-tools++/objects/seqsplit/.cvsignore include/ncbi-tools++/objects/seqsplit/.gitignore include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_Ids.hpp include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_Ids_.hpp @@ -2949,7 +2911,6 @@ include/ncbi-tools++/objects/seqsplit/ID2S_Split_Info.hpp include/ncbi-tools++/objects/seqsplit/ID2S_Split_Info_.hpp include/ncbi-tools++/objects/seqsplit/NCBI_Seq_split_module.hpp include/ncbi-tools++/objects/seqsplit/seqsplit__.hpp -include/ncbi-tools++/objects/seqtable/.cvsignore include/ncbi-tools++/objects/seqtable/.gitignore include/ncbi-tools++/objects/seqtable/BVector_data.hpp include/ncbi-tools++/objects/seqtable/BVector_data_.hpp @@ -2977,7 +2938,6 @@ include/ncbi-tools++/objects/seqtable/Seq_table_.hpp include/ncbi-tools++/objects/seqtable/impl/delta_cache.hpp include/ncbi-tools++/objects/seqtable/seq_table_exception.hpp include/ncbi-tools++/objects/seqtable/seqtable__.hpp -include/ncbi-tools++/objects/seqtest/.cvsignore include/ncbi-tools++/objects/seqtest/.gitignore include/ncbi-tools++/objects/seqtest/NCBI_SeqTest_module.hpp include/ncbi-tools++/objects/seqtest/SeqTestResults.hpp @@ -2987,7 +2947,6 @@ include/ncbi-tools++/objects/seqtest/Seq_test_result_.hpp include/ncbi-tools++/objects/seqtest/Seq_test_result_set.hpp include/ncbi-tools++/objects/seqtest/Seq_test_result_set_.hpp include/ncbi-tools++/objects/seqtest/seqtest__.hpp -include/ncbi-tools++/objects/submit/.cvsignore include/ncbi-tools++/objects/submit/.gitignore include/ncbi-tools++/objects/submit/Contact_info.hpp include/ncbi-tools++/objects/submit/Contact_info_.hpp @@ -2998,7 +2957,6 @@ include/ncbi-tools++/objects/submit/Submit_block.hpp include/ncbi-tools++/objects/submit/Submit_block_.hpp include/ncbi-tools++/objects/submit/submit__.hpp include/ncbi-tools++/objects/submit/submit_macros.hpp -include/ncbi-tools++/objects/taxon1/.cvsignore include/ncbi-tools++/objects/taxon1/.gitignore include/ncbi-tools++/objects/taxon1/NCBI_Taxon1_module.hpp include/ncbi-tools++/objects/taxon1/Taxon1_data.hpp @@ -3018,7 +2976,6 @@ include/ncbi-tools++/objects/taxon1/Taxon2_data_.hpp include/ncbi-tools++/objects/taxon1/local_taxon.hpp include/ncbi-tools++/objects/taxon1/taxon1.hpp include/ncbi-tools++/objects/taxon1/taxon1__.hpp -include/ncbi-tools++/objects/taxon3/.cvsignore include/ncbi-tools++/objects/taxon3/.gitignore include/ncbi-tools++/objects/taxon3/NCBI_Taxon3_module.hpp include/ncbi-tools++/objects/taxon3/SequenceOfInt.hpp @@ -3043,7 +3000,6 @@ include/ncbi-tools++/objects/taxon3/cached_taxon3.hpp include/ncbi-tools++/objects/taxon3/itaxon3.hpp include/ncbi-tools++/objects/taxon3/taxon3.hpp include/ncbi-tools++/objects/taxon3/taxon3__.hpp -include/ncbi-tools++/objects/tinyseq/.cvsignore include/ncbi-tools++/objects/tinyseq/.gitignore include/ncbi-tools++/objects/tinyseq/NCBI_TSeq_module.hpp include/ncbi-tools++/objects/tinyseq/TSeq.hpp @@ -3051,7 +3007,6 @@ include/ncbi-tools++/objects/tinyseq/TSeqSet.hpp include/ncbi-tools++/objects/tinyseq/TSeqSet_.hpp include/ncbi-tools++/objects/tinyseq/TSeq_.hpp include/ncbi-tools++/objects/tinyseq/tinyseq__.hpp -include/ncbi-tools++/objects/trackmgr/.cvsignore include/ncbi-tools++/objects/trackmgr/.gitignore include/ncbi-tools++/objects/trackmgr/NCBI_TrackManager_module.hpp include/ncbi-tools++/objects/trackmgr/TMgr_ACL_AccessLevel.hpp @@ -3211,7 +3166,6 @@ include/ncbi-tools++/objects/trackmgr/trackmgr_client.hpp include/ncbi-tools++/objects/trackmgr/trackmgr_client_.hpp include/ncbi-tools++/objects/trackmgr/trackmgr_export.h include/ncbi-tools++/objects/trackmgr/trackset_client.hpp -include/ncbi-tools++/objects/valerr/.cvsignore include/ncbi-tools++/objects/valerr/.gitignore include/ncbi-tools++/objects/valerr/NCBI_ValErrors_module.hpp include/ncbi-tools++/objects/valerr/ValidErrItem.hpp @@ -3219,7 +3173,6 @@ include/ncbi-tools++/objects/valerr/ValidErrItem_.hpp include/ncbi-tools++/objects/valerr/ValidError.hpp include/ncbi-tools++/objects/valerr/ValidError_.hpp include/ncbi-tools++/objects/valerr/valerr__.hpp -include/ncbi-tools++/objects/valid/.cvsignore include/ncbi-tools++/objects/valid/.gitignore include/ncbi-tools++/objects/valid/Comment_rule.hpp include/ncbi-tools++/objects/valid/Comment_rule_.hpp @@ -3239,7 +3192,6 @@ include/ncbi-tools++/objects/valid/Phrase_list_.hpp include/ncbi-tools++/objects/valid/Severity_level.hpp include/ncbi-tools++/objects/valid/Severity_level_.hpp include/ncbi-tools++/objects/valid/valid__.hpp -include/ncbi-tools++/objects/variation/.cvsignore include/ncbi-tools++/objects/variation/.gitignore include/ncbi-tools++/objects/variation/NCBI_VariationPackage_module.hpp include/ncbi-tools++/objects/variation/VariantPlacement.hpp @@ -3251,7 +3203,6 @@ include/ncbi-tools++/objects/variation/VariationMethod.hpp include/ncbi-tools++/objects/variation/VariationMethod_.hpp include/ncbi-tools++/objects/variation/Variation_.hpp include/ncbi-tools++/objects/variation/variation__.hpp -include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/.cvsignore include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/.gitignore include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/Error.hpp include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/Error_.hpp @@ -3261,7 +3212,6 @@ include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/Placement_.hpp include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/SearchByRsIdReply.hpp include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/SearchByRsIdReply_.hpp include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.hpp -include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/.cvsignore include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/.gitignore include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData.hpp include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.hpp @@ -3275,7 +3225,6 @@ include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipSe include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipServiceReply_.hpp include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/NCBI_dbsnp_tooltips_module.hpp include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.hpp -include/ncbi-tools++/objects/varrep/.cvsignore include/ncbi-tools++/objects/varrep/.gitignore include/ncbi-tools++/objects/varrep/AaInterval.hpp include/ncbi-tools++/objects/varrep/AaInterval_.hpp @@ -3552,13 +3501,13 @@ include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_general.hpp include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_isam.hpp include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_lmdb.hpp include/ncbi-tools++/objtools/blast/services/blast_services.hpp -include/ncbi-tools++/objtools/cleanup/autogenerated_cleanup.hpp include/ncbi-tools++/objtools/cleanup/capitalization_string.hpp include/ncbi-tools++/objtools/cleanup/cleanup.hpp include/ncbi-tools++/objtools/cleanup/cleanup_change.hpp include/ncbi-tools++/objtools/cleanup/cleanup_message.hpp include/ncbi-tools++/objtools/cleanup/cleanup_pub.hpp include/ncbi-tools++/objtools/cleanup/fix_feature_id.hpp +include/ncbi-tools++/objtools/cleanup/huge_file_cleanup.hpp include/ncbi-tools++/objtools/data_loaders/blastdb/bdbloader.hpp include/ncbi-tools++/objtools/data_loaders/blastdb/bdbloader_rmt.hpp include/ncbi-tools++/objtools/data_loaders/blastdb/blastdb_adapter.hpp @@ -3622,6 +3571,7 @@ include/ncbi-tools++/objtools/edit/cds_fix.hpp include/ncbi-tools++/objtools/edit/dblink_field.hpp include/ncbi-tools++/objtools/edit/edit_error.hpp include/ncbi-tools++/objtools/edit/edit_exception.hpp +include/ncbi-tools++/objtools/edit/eutils_updater.hpp include/ncbi-tools++/objtools/edit/external_annots.hpp include/ncbi-tools++/objtools/edit/feattable_edit.hpp include/ncbi-tools++/objtools/edit/feature_propagate.hpp @@ -3630,13 +3580,20 @@ include/ncbi-tools++/objtools/edit/gap_trim.hpp include/ncbi-tools++/objtools/edit/gaps_edit.hpp include/ncbi-tools++/objtools/edit/gb_block_field.hpp include/ncbi-tools++/objtools/edit/gene_utils.hpp +include/ncbi-tools++/objtools/edit/huge_asn_loader.hpp +include/ncbi-tools++/objtools/edit/huge_asn_macro_reader.hpp +include/ncbi-tools++/objtools/edit/huge_asn_reader.hpp +include/ncbi-tools++/objtools/edit/huge_file.hpp +include/ncbi-tools++/objtools/edit/huge_file_process.hpp include/ncbi-tools++/objtools/edit/link_cds_mrna.hpp include/ncbi-tools++/objtools/edit/loc_edit.hpp include/ncbi-tools++/objtools/edit/mail_report.hpp +include/ncbi-tools++/objtools/edit/mla_updater.hpp include/ncbi-tools++/objtools/edit/parse_text_options.hpp include/ncbi-tools++/objtools/edit/promote.hpp include/ncbi-tools++/objtools/edit/pub_fix.hpp include/ncbi-tools++/objtools/edit/publication_edit.hpp +include/ncbi-tools++/objtools/edit/pubmed_updater.hpp include/ncbi-tools++/objtools/edit/remote_updater.hpp include/ncbi-tools++/objtools/edit/rna_edit.hpp include/ncbi-tools++/objtools/edit/seq_edit.hpp @@ -3658,7 +3615,705 @@ include/ncbi-tools++/objtools/eutils/api/esearch.hpp include/ncbi-tools++/objtools/eutils/api/espell.hpp include/ncbi-tools++/objtools/eutils/api/esummary.hpp include/ncbi-tools++/objtools/eutils/api/eutils.hpp -include/ncbi-tools++/objtools/eutils/egquery/.cvsignore +include/ncbi-tools++/objtools/eutils/efetch/.gitignore +include/ncbi-tools++/objtools/eutils/efetch/Abs.hpp +include/ncbi-tools++/objtools/eutils/efetch/Abs_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Abstract.hpp +include/ncbi-tools++/objtools/eutils/efetch/AbstractText.hpp +include/ncbi-tools++/objtools/eutils/efetch/AbstractText_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Abstract_.hpp +include/ncbi-tools++/objtools/eutils/efetch/AccessionNumber.hpp +include/ncbi-tools++/objtools/eutils/efetch/AccessionNumberList.hpp +include/ncbi-tools++/objtools/eutils/efetch/AccessionNumberList_.hpp +include/ncbi-tools++/objtools/eutils/efetch/AccessionNumber_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Acronym.hpp +include/ncbi-tools++/objtools/eutils/efetch/Acronym_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Affiliation.hpp +include/ncbi-tools++/objtools/eutils/efetch/AffiliationInfo.hpp +include/ncbi-tools++/objtools/eutils/efetch/AffiliationInfo_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Affiliation_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Agency.hpp +include/ncbi-tools++/objtools/eutils/efetch/Agency_.hpp +include/ncbi-tools++/objtools/eutils/efetch/And.hpp +include/ncbi-tools++/objtools/eutils/efetch/And_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Annotation.hpp +include/ncbi-tools++/objtools/eutils/efetch/Annotation_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Annotation_xml.hpp +include/ncbi-tools++/objtools/eutils/efetch/Annotation_xml_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Apply.hpp +include/ncbi-tools++/objtools/eutils/efetch/Apply_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Apply_content.hpp +include/ncbi-tools++/objtools/eutils/efetch/Apply_content_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Approx.hpp +include/ncbi-tools++/objtools/eutils/efetch/Approx_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arccos.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arccos_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arccosh.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arccosh_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arccot.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arccot_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arccoth.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arccoth_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arccsc.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arccsc_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arccsch.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arccsch_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arcsec.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arcsec_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arcsech.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arcsech_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arcsin.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arcsin_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arcsinh.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arcsinh_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arctan.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arctan_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arctanh.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arctanh_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arg.hpp +include/ncbi-tools++/objtools/eutils/efetch/Arg_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Article.hpp +include/ncbi-tools++/objtools/eutils/efetch/ArticleDate.hpp +include/ncbi-tools++/objtools/eutils/efetch/ArticleDate_.hpp +include/ncbi-tools++/objtools/eutils/efetch/ArticleId.hpp +include/ncbi-tools++/objtools/eutils/efetch/ArticleIdList.hpp +include/ncbi-tools++/objtools/eutils/efetch/ArticleIdList_.hpp +include/ncbi-tools++/objtools/eutils/efetch/ArticleId_.hpp +include/ncbi-tools++/objtools/eutils/efetch/ArticleTitle.hpp +include/ncbi-tools++/objtools/eutils/efetch/ArticleTitle_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Article_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Author.hpp +include/ncbi-tools++/objtools/eutils/efetch/AuthorList.hpp +include/ncbi-tools++/objtools/eutils/efetch/AuthorList_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Author_.hpp +include/ncbi-tools++/objtools/eutils/efetch/B.hpp +include/ncbi-tools++/objtools/eutils/efetch/B_.hpp +include/ncbi-tools++/objtools/eutils/efetch/BeginningDate.hpp +include/ncbi-tools++/objtools/eutils/efetch/BeginningDate_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Bind.hpp +include/ncbi-tools++/objtools/eutils/efetch/Bind_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Bind_content.hpp +include/ncbi-tools++/objtools/eutils/efetch/Bind_content_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Book.hpp +include/ncbi-tools++/objtools/eutils/efetch/BookDocument.hpp +include/ncbi-tools++/objtools/eutils/efetch/BookDocumentSet.hpp +include/ncbi-tools++/objtools/eutils/efetch/BookDocumentSet_.hpp +include/ncbi-tools++/objtools/eutils/efetch/BookDocument_.hpp +include/ncbi-tools++/objtools/eutils/efetch/BookTitle.hpp +include/ncbi-tools++/objtools/eutils/efetch/BookTitle_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Book_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Bvar.hpp +include/ncbi-tools++/objtools/eutils/efetch/BvarQ.hpp +include/ncbi-tools++/objtools/eutils/efetch/BvarQ_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Bvar_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Card.hpp +include/ncbi-tools++/objtools/eutils/efetch/Card_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Cartesianproduct.hpp +include/ncbi-tools++/objtools/eutils/efetch/Cartesianproduct_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Cbytes.hpp +include/ncbi-tools++/objtools/eutils/efetch/Cbytes_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Ceiling.hpp +include/ncbi-tools++/objtools/eutils/efetch/Ceiling_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Cerror.hpp +include/ncbi-tools++/objtools/eutils/efetch/Cerror_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Chemical.hpp +include/ncbi-tools++/objtools/eutils/efetch/ChemicalList.hpp +include/ncbi-tools++/objtools/eutils/efetch/ChemicalList_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Chemical_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Ci.hpp +include/ncbi-tools++/objtools/eutils/efetch/Ci_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Ci_content.hpp +include/ncbi-tools++/objtools/eutils/efetch/Ci_content_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Citation.hpp +include/ncbi-tools++/objtools/eutils/efetch/CitationSubset.hpp +include/ncbi-tools++/objtools/eutils/efetch/CitationSubset_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Citation_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Cn.hpp +include/ncbi-tools++/objtools/eutils/efetch/Cn_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Cn_content.hpp +include/ncbi-tools++/objtools/eutils/efetch/Cn_content_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Codomain.hpp +include/ncbi-tools++/objtools/eutils/efetch/Codomain_.hpp +include/ncbi-tools++/objtools/eutils/efetch/CoiStatement.hpp +include/ncbi-tools++/objtools/eutils/efetch/CoiStatement_.hpp +include/ncbi-tools++/objtools/eutils/efetch/CollectionTitle.hpp +include/ncbi-tools++/objtools/eutils/efetch/CollectionTitle_.hpp +include/ncbi-tools++/objtools/eutils/efetch/CollectiveName.hpp +include/ncbi-tools++/objtools/eutils/efetch/CollectiveName_.hpp +include/ncbi-tools++/objtools/eutils/efetch/CommentsCorrections.hpp +include/ncbi-tools++/objtools/eutils/efetch/CommentsCorrectionsList.hpp +include/ncbi-tools++/objtools/eutils/efetch/CommentsCorrectionsList_.hpp +include/ncbi-tools++/objtools/eutils/efetch/CommentsCorrections_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Complexes.hpp +include/ncbi-tools++/objtools/eutils/efetch/Complexes_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Compose.hpp +include/ncbi-tools++/objtools/eutils/efetch/Compose_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Condition.hpp +include/ncbi-tools++/objtools/eutils/efetch/Condition_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Conjugate.hpp +include/ncbi-tools++/objtools/eutils/efetch/Conjugate_.hpp +include/ncbi-tools++/objtools/eutils/efetch/ContExp.hpp +include/ncbi-tools++/objtools/eutils/efetch/ContExp_.hpp +include/ncbi-tools++/objtools/eutils/efetch/ContractNumber.hpp +include/ncbi-tools++/objtools/eutils/efetch/ContractNumber_.hpp +include/ncbi-tools++/objtools/eutils/efetch/ContributionDate.hpp +include/ncbi-tools++/objtools/eutils/efetch/ContributionDate_.hpp +include/ncbi-tools++/objtools/eutils/efetch/CopyrightInformation.hpp +include/ncbi-tools++/objtools/eutils/efetch/CopyrightInformation_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Cos.hpp +include/ncbi-tools++/objtools/eutils/efetch/Cos_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Cosh.hpp +include/ncbi-tools++/objtools/eutils/efetch/Cosh_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Cot.hpp +include/ncbi-tools++/objtools/eutils/efetch/Cot_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Coth.hpp +include/ncbi-tools++/objtools/eutils/efetch/Coth_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Country.hpp +include/ncbi-tools++/objtools/eutils/efetch/Country_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Cs.hpp +include/ncbi-tools++/objtools/eutils/efetch/Cs_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Csc.hpp +include/ncbi-tools++/objtools/eutils/efetch/Csc_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Csch.hpp +include/ncbi-tools++/objtools/eutils/efetch/Csch_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Csymbol.hpp +include/ncbi-tools++/objtools/eutils/efetch/Csymbol_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Csymbol_content.hpp +include/ncbi-tools++/objtools/eutils/efetch/Csymbol_content_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Curl.hpp +include/ncbi-tools++/objtools/eutils/efetch/Curl_.hpp +include/ncbi-tools++/objtools/eutils/efetch/DataBank.hpp +include/ncbi-tools++/objtools/eutils/efetch/DataBankList.hpp +include/ncbi-tools++/objtools/eutils/efetch/DataBankList_.hpp +include/ncbi-tools++/objtools/eutils/efetch/DataBankName.hpp +include/ncbi-tools++/objtools/eutils/efetch/DataBankName_.hpp +include/ncbi-tools++/objtools/eutils/efetch/DataBank_.hpp +include/ncbi-tools++/objtools/eutils/efetch/DateCompleted.hpp +include/ncbi-tools++/objtools/eutils/efetch/DateCompleted_.hpp +include/ncbi-tools++/objtools/eutils/efetch/DateRevised.hpp +include/ncbi-tools++/objtools/eutils/efetch/DateRevised_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Day.hpp +include/ncbi-tools++/objtools/eutils/efetch/Day_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Declare.hpp +include/ncbi-tools++/objtools/eutils/efetch/Declare_.hpp +include/ncbi-tools++/objtools/eutils/efetch/Degree.hpp +include/ncbi-tools++/objtools/eutils/efetch/Degree_.hpp +include/ncbi-tools++/objtools/eutils/efetch/DeleteCitation.hpp +include/ncbi-tools++/objtools/eutils/efetch/DeleteCitation_.hpp *** 720 LINES SKIPPED ***