git: 0d9ff1bcabfc - main - biology/vcflib: Unbreak build on aarch64, probably others

The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=0d9ff1bcabfc0d026a6505fe7d9b2ccd7cf57c1f

commit 0d9ff1bcabfc0d026a6505fe7d9b2ccd7cf57c1f
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2023-01-31 16:24:42 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2023-01-31 16:25:33 +0000

    biology/vcflib: Unbreak build on aarch64, probably others
    
    Patch out hard-coded -march=native, not supported by clang aarch64
---
 biology/vcflib/Makefile                   |  1 +
 biology/vcflib/files/patch-CMakeLists.txt | 16 ++++++++--------
 2 files changed, 9 insertions(+), 8 deletions(-)

diff --git a/biology/vcflib/Makefile b/biology/vcflib/Makefile
index 311b78bac7ce..76e01dc75cbb 100644
--- a/biology/vcflib/Makefile
+++ b/biology/vcflib/Makefile
@@ -1,6 +1,7 @@
 PORTNAME=		vcflib
 DISTVERSIONPREFIX=	v
 DISTVERSION=		1.0.6
+PORTREVISION=		1
 CATEGORIES=		biology
 
 MAINTAINER=	jwb@FreeBSD.org
diff --git a/biology/vcflib/files/patch-CMakeLists.txt b/biology/vcflib/files/patch-CMakeLists.txt
index 5a7824a2dfa0..263e3dbee0f9 100644
--- a/biology/vcflib/files/patch-CMakeLists.txt
+++ b/biology/vcflib/files/patch-CMakeLists.txt
@@ -9,12 +9,12 @@
  
  include(ExternalProject)
  include(FeatureSummary)
-@@ -38,7 +38,7 @@ option(PROFILING "Enable profiling" OFF)
- option(GPROF "Enable gprof profiling" OFF)
- option(ASAN "Use address sanitiser" OFF)
- option(ZIG "Set to OFF to disable the zig code" ON)
--option(WFA_GITMODULE "Force local git submodule for WFA2LIB" ON) # disable in distros, you may need to add path to WFA_INCLUDE_DIRS
-+option(WFA_GITMODULE "Force local git submodule for WFA2LIB" OFF) # disable in distros, you may need to add path to WFA_INCLUDE_DIRS
+@@ -69,7 +69,7 @@ if(NOT CMAKE_BUILD_TYPE)
+ endif()
+ 
+ if (${CMAKE_BUILD_TYPE} MATCHES Release)
+-  set(EXTRA_FLAGS "-march=native -D_FILE_OFFSET_BITS=64")
++  set(EXTRA_FLAGS "-D_FILE_OFFSET_BITS=64")
+   # set(CMAKE_CXX_FLAGS_RELEASE "-DNDEBUG") # reset CXX_FLAGS to replace -O3 with -Ofast
+ endif()
  
- include(CheckIPOSupported) # adds lto
- check_ipo_supported(RESULT ipo_supported OUTPUT output)