From nobody Tue Jan 31 16:25:34 2023 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4P5r4t587hz3bQv6; Tue, 31 Jan 2023 16:25:34 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4P5r4t4f9vz43Zp; Tue, 31 Jan 2023 16:25:34 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1675182334; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=tWg4fh4Fj033GbVhcu1c0Rf7fv+FJ4tHhdo+U03qmYA=; b=Od6F3Pqpj7sRble7O1oDbxfDE4XH4kbq/SAxruQPq3IiJmHhbdWQlR88ysbOoraGyUqYco DKyKMU/F9CNCyRxURPV25Q0+H3/GdqBy8oLQCR33Y8hMp1x+F/acxVoVow7IgTGDtNbN0E 1MKyPAQqIfArQK56b6W1/EW1EywZ7GhlBj2H2mElMc7OPu4ZooahGJkP3W6z8k3aRMQzEs JOQNcKjfdndV3yVwvo4LnWpYYO98cvooiM9hxXHEPwzWqnHipj6sfnlqtSpjJevbgbegiJ l0NiXDBVIaxHo96lfEMuWPawIhvNd71Gn1gfDR61HvfrJp3JMnPCQsqceu+bpw== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1675182334; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=tWg4fh4Fj033GbVhcu1c0Rf7fv+FJ4tHhdo+U03qmYA=; b=hpA+cHjfFkDCJS5P/FqIVKHrXphkE2/7PA9VSNA+WG1Om+IAbMhLSWfaXxLZliYqDw0kA5 s75/dZC4TW4Uca7mkKHtMs/oF52R/yosMYkX5Wer6kpAA+cGkVfnzLEC9HvJfdjRcFwyqo vIOnTBv72mgG4rWYl++ZAl0oB5oWG6UdAApLfWNgL3gaH2vrokqYUgwQPJ90AVvxqriw0X sW+Y+qFXYYEIs6rO3NwKkF0gKOlmsURHafUFIjVn/6L23LXEDLqpvVH+HfrBDmH/Sdi5C5 wCjo8y4JLiUpWCOiO6CcqNXTsCbKpFZO3aDHEv1aoBlJoLBv9hf6E33/bE+Big== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1675182334; a=rsa-sha256; cv=none; b=xE3Ppznm/PmSUFReYkqVAi5EdxhyOq4OftvgI8hNrynCXvU/3l3oLCQ4edxaYI8UAtVGaB 6r41dL8CPbazi/25XVFwO4ZpvamxVgxKSTiFCok3eECGDDb/0u1pl74D/di0wcU/E3aPHX PNgsVVsFL19qzrUUbT4fLLVZ4SGF3Bj18uFjnk39lPaphogo2dthEVsX9ielhBIKqONwP2 27c2KgpYawT08Hnf5fId924warbRsE1GgakyGbyY3l+IuX7HAyAc+MqfsVR0Aaj9bbT7WZ kjnrdWeqsbcsGeUVKSnJZfINo+48RnGDJXJfAvYEsSd9jUkGKQebclF7sCw8lA== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4P5r4t3hpFzvM2; Tue, 31 Jan 2023 16:25:34 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 30VGPYiv011322; Tue, 31 Jan 2023 16:25:34 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 30VGPYBB011321; Tue, 31 Jan 2023 16:25:34 GMT (envelope-from git) Date: Tue, 31 Jan 2023 16:25:34 GMT Message-Id: <202301311625.30VGPYBB011321@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 0d9ff1bcabfc - main - biology/vcflib: Unbreak build on aarch64, probably others List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 0d9ff1bcabfc0d026a6505fe7d9b2ccd7cf57c1f Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=0d9ff1bcabfc0d026a6505fe7d9b2ccd7cf57c1f commit 0d9ff1bcabfc0d026a6505fe7d9b2ccd7cf57c1f Author: Jason W. Bacon AuthorDate: 2023-01-31 16:24:42 +0000 Commit: Jason W. Bacon CommitDate: 2023-01-31 16:25:33 +0000 biology/vcflib: Unbreak build on aarch64, probably others Patch out hard-coded -march=native, not supported by clang aarch64 --- biology/vcflib/Makefile | 1 + biology/vcflib/files/patch-CMakeLists.txt | 16 ++++++++-------- 2 files changed, 9 insertions(+), 8 deletions(-) diff --git a/biology/vcflib/Makefile b/biology/vcflib/Makefile index 311b78bac7ce..76e01dc75cbb 100644 --- a/biology/vcflib/Makefile +++ b/biology/vcflib/Makefile @@ -1,6 +1,7 @@ PORTNAME= vcflib DISTVERSIONPREFIX= v DISTVERSION= 1.0.6 +PORTREVISION= 1 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/vcflib/files/patch-CMakeLists.txt b/biology/vcflib/files/patch-CMakeLists.txt index 5a7824a2dfa0..263e3dbee0f9 100644 --- a/biology/vcflib/files/patch-CMakeLists.txt +++ b/biology/vcflib/files/patch-CMakeLists.txt @@ -9,12 +9,12 @@ include(ExternalProject) include(FeatureSummary) -@@ -38,7 +38,7 @@ option(PROFILING "Enable profiling" OFF) - option(GPROF "Enable gprof profiling" OFF) - option(ASAN "Use address sanitiser" OFF) - option(ZIG "Set to OFF to disable the zig code" ON) --option(WFA_GITMODULE "Force local git submodule for WFA2LIB" ON) # disable in distros, you may need to add path to WFA_INCLUDE_DIRS -+option(WFA_GITMODULE "Force local git submodule for WFA2LIB" OFF) # disable in distros, you may need to add path to WFA_INCLUDE_DIRS +@@ -69,7 +69,7 @@ if(NOT CMAKE_BUILD_TYPE) + endif() + + if (${CMAKE_BUILD_TYPE} MATCHES Release) +- set(EXTRA_FLAGS "-march=native -D_FILE_OFFSET_BITS=64") ++ set(EXTRA_FLAGS "-D_FILE_OFFSET_BITS=64") + # set(CMAKE_CXX_FLAGS_RELEASE "-DNDEBUG") # reset CXX_FLAGS to replace -O3 with -Ofast + endif() - include(CheckIPOSupported) # adds lto - check_ipo_supported(RESULT ipo_supported OUTPUT output)