git: 0567b2de2cf6 - main - biology/p5-BioPerl: Update to 1.007008
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Date: Wed, 11 Oct 2023 12:59:48 UTC
The branch main has been updated by sunpoet:
URL: https://cgit.FreeBSD.org/ports/commit/?id=0567b2de2cf6d1f7d9fe6c7403b6d4db6cb21e40
commit 0567b2de2cf6d1f7d9fe6c7403b6d4db6cb21e40
Author: Po-Chuan Hsieh <sunpoet@FreeBSD.org>
AuthorDate: 2023-10-11 12:57:41 +0000
Commit: Po-Chuan Hsieh <sunpoet@FreeBSD.org>
CommitDate: 2023-10-11 12:57:41 +0000
biology/p5-BioPerl: Update to 1.007008
- Update WWW
- Sort *_DEPENDS
Changes: https://metacpan.org/dist/BioPerl/changes
---
biology/p5-BioPerl/Makefile | 11 +++++------
biology/p5-BioPerl/distinfo | 6 +++---
biology/p5-BioPerl/pkg-plist | 2 --
3 files changed, 8 insertions(+), 11 deletions(-)
diff --git a/biology/p5-BioPerl/Makefile b/biology/p5-BioPerl/Makefile
index 287a930aa726..f91c0a5be426 100644
--- a/biology/p5-BioPerl/Makefile
+++ b/biology/p5-BioPerl/Makefile
@@ -1,15 +1,15 @@
PORTNAME= BioPerl
-PORTVERSION= 1.007007
-PORTREVISION= 1
+PORTVERSION= 1.007008
CATEGORIES= biology perl5
MASTER_SITES= CPAN
MASTER_SITE_SUBDIR= CPAN:CJFIELDS
PKGNAMEPREFIX= p5-
-DISTNAME= ${PORTNAME}-${PORTVERSION:R}${PORTVERSION:E:S|00|.|g}
+DISTNAME= BioPerl-${PORTVERSION:R}${PORTVERSION:E:S|00|.|g}
MAINTAINER= sunpoet@FreeBSD.org
COMMENT= Collection of Perl modules for bioinformatics
-WWW= https://bioperl.org/
+WWW= https://metacpan.org/dist/BioPerl \
+ https://bioperl.org/
LICENSE= ART10 GPLv1+
LICENSE_COMB= dual
@@ -29,12 +29,11 @@ RUN_DEPENDS= p5-Data-Stag>=0:devel/p5-Data-Stag \
p5-Test-Most>=0:devel/p5-Test-Most \
p5-Test-RequiresInternet>=0:devel/p5-Test-RequiresInternet \
p5-URI>=0:net/p5-URI \
- p5-XML-DOM-XPath>=0:textproc/p5-XML-DOM-XPath \
p5-XML-DOM>=0:textproc/p5-XML-DOM \
p5-XML-LibXML>=0:textproc/p5-XML-LibXML \
+ p5-XML-SAX>=0:textproc/p5-XML-SAX \
p5-XML-SAX-Base>=0:textproc/p5-XML-SAX-Base \
p5-XML-SAX-Writer>=0:textproc/p5-XML-SAX-Writer \
- p5-XML-SAX>=0:textproc/p5-XML-SAX \
p5-XML-Twig>=0:textproc/p5-XML-Twig \
p5-XML-Writer>=0:textproc/p5-XML-Writer \
p5-YAML>=0:textproc/p5-YAML \
diff --git a/biology/p5-BioPerl/distinfo b/biology/p5-BioPerl/distinfo
index 35db2f57ddf6..01ab232e2aa9 100644
--- a/biology/p5-BioPerl/distinfo
+++ b/biology/p5-BioPerl/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1575793851
-SHA256 (BioPerl-1.7.7.tar.gz) = 730e2bd38b7550bf6bbd5bca50d019a70cca514559702c1389d770ff69cff1bb
-SIZE (BioPerl-1.7.7.tar.gz) = 7532782
+TIMESTAMP = 1696904108
+SHA256 (BioPerl-1.7.8.tar.gz) = c490a3be7715ea6e4305efd9710e5edab82dabc55fd786b6505b550a30d71738
+SIZE (BioPerl-1.7.8.tar.gz) = 7527658
diff --git a/biology/p5-BioPerl/pkg-plist b/biology/p5-BioPerl/pkg-plist
index afa3cb8732ea..1851c68dcf25 100644
--- a/biology/p5-BioPerl/pkg-plist
+++ b/biology/p5-BioPerl/pkg-plist
@@ -384,7 +384,6 @@ bin/bp_unflatten_seq
%%SITE_PERL%%/Bio/SeqIO/gbxml.pm
%%SITE_PERL%%/Bio/SeqIO/gcg.pm
%%SITE_PERL%%/Bio/SeqIO/genbank.pm
-%%SITE_PERL%%/Bio/SeqIO/interpro.pm
%%SITE_PERL%%/Bio/SeqIO/kegg.pm
%%SITE_PERL%%/Bio/SeqIO/largefasta.pm
%%SITE_PERL%%/Bio/SeqIO/locuslink.pm
@@ -896,7 +895,6 @@ bin/bp_unflatten_seq
%%PERL5_MAN3%%/Bio::SeqIO::gbxml.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::gcg.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::genbank.3.gz
-%%PERL5_MAN3%%/Bio::SeqIO::interpro.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::kegg.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::largefasta.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::locuslink.3.gz