From nobody Wed Oct 11 12:59:48 2023 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4S5CXj1wrXz4xLk6; Wed, 11 Oct 2023 12:59:49 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4S5CXj1PD7z4b6Z; Wed, 11 Oct 2023 12:59:49 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1697029189; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=p8SIY1gjCdq6hHl9OoI8XTjn0mW+smXB3h1s/UulOKI=; b=QDGSLVNh7qAdG8iC47iFLCMV2hO5eMsxqCchlgDnZ9LBrXLw0FL6JT86qbsudx9tLvWwvB 3Vf86+diLtv7iG+3/VAC9GU9pSs+tA4OutL2UumjcGO9IuFfrRFR7T9TQWzBmSK+QaBa4p DZ7Te1J/ThDfxfFhTQAeO7IbX6b4uyIHfdRe2rrvEZQreqj2mVJdFUgGHoNjQODw7gCnHP YyDLxki/j3HiIfFxjwiqh0RJgzC9Bzaid4VUDiJl4A2pvQLMEkBsxRfIFNhwbl5b5is3bI S0CEtuJjx/NE9sVUFh6Tk8Vs55AsgxyAMgMV4BNHp54cAilcqqzVQprAqUL2kw== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1697029189; a=rsa-sha256; cv=none; b=QcX+9nzJyEzEh7PRcpdS956wfhFl+RKA5/Mh7yYAUOOqgcQmKXjPi7lR8q/2+G9dowBZFB xhIntaYbbaZ1px75E0uPdB0dZdiJv0tW0FUpMwOm7ubIC/qaiRSOx2GHK0wS5cec6khwqB V1C5eB2J3vdubHOeaOgDmp5hBDU45JVlqqLw0mN7Ucgs96wKT+UkYD/htTVK0Vgl6QFv7U 35YBQINjVYOoqgHDcYgw2B0UuTtHhIhNk+7x88u5xR2ihJ+hjoBT4ZI2NxN2QyezNN4MsL rIpxPjd8pn6SccypzGutrr43gqnohcwZNq5WERWvGyz9O0/1pO9AfHYq9L5zdw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1697029189; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=p8SIY1gjCdq6hHl9OoI8XTjn0mW+smXB3h1s/UulOKI=; b=xHLFHfiXrzRSEMr+6zJW+siyeTEksyxNjvcuWAaKcVFC/aQhah4Anho0TcjGDtQkHmqLJA 6gmRRJEoJxYtONP5UeFWFkEFFsEmjgNh1+/taGmPOgpA151TXYy28P94StAnslimHIX0SZ VDFfmI4z+3WDVGmspf545e9k89fI4Yb6EUINloLbOWj24WVxM8Mop9g/y9/A0PuzTsEI27 xJD4BCM3k2tOW5D61BvuwiyYZZehTgjkCTK2MrX2gKOC/yBaff1lGYVL6xzn4tzPYiGi0R u/cK9M8/97xUGrOGHBbKtmnhG+FkruLhyks7/cDVAPIv0ceb3suJwhoiXQZTmw== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4S5CXj02jFz6kk; Wed, 11 Oct 2023 12:59:49 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 39BCxm0x036603; Wed, 11 Oct 2023 12:59:48 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 39BCxmrj036600; Wed, 11 Oct 2023 12:59:48 GMT (envelope-from git) Date: Wed, 11 Oct 2023 12:59:48 GMT Message-Id: <202310111259.39BCxmrj036600@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Po-Chuan Hsieh Subject: git: 0567b2de2cf6 - main - biology/p5-BioPerl: Update to 1.007008 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: sunpoet X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 0567b2de2cf6d1f7d9fe6c7403b6d4db6cb21e40 Auto-Submitted: auto-generated The branch main has been updated by sunpoet: URL: https://cgit.FreeBSD.org/ports/commit/?id=0567b2de2cf6d1f7d9fe6c7403b6d4db6cb21e40 commit 0567b2de2cf6d1f7d9fe6c7403b6d4db6cb21e40 Author: Po-Chuan Hsieh AuthorDate: 2023-10-11 12:57:41 +0000 Commit: Po-Chuan Hsieh CommitDate: 2023-10-11 12:57:41 +0000 biology/p5-BioPerl: Update to 1.007008 - Update WWW - Sort *_DEPENDS Changes: https://metacpan.org/dist/BioPerl/changes --- biology/p5-BioPerl/Makefile | 11 +++++------ biology/p5-BioPerl/distinfo | 6 +++--- biology/p5-BioPerl/pkg-plist | 2 -- 3 files changed, 8 insertions(+), 11 deletions(-) diff --git a/biology/p5-BioPerl/Makefile b/biology/p5-BioPerl/Makefile index 287a930aa726..f91c0a5be426 100644 --- a/biology/p5-BioPerl/Makefile +++ b/biology/p5-BioPerl/Makefile @@ -1,15 +1,15 @@ PORTNAME= BioPerl -PORTVERSION= 1.007007 -PORTREVISION= 1 +PORTVERSION= 1.007008 CATEGORIES= biology perl5 MASTER_SITES= CPAN MASTER_SITE_SUBDIR= CPAN:CJFIELDS PKGNAMEPREFIX= p5- -DISTNAME= ${PORTNAME}-${PORTVERSION:R}${PORTVERSION:E:S|00|.|g} +DISTNAME= BioPerl-${PORTVERSION:R}${PORTVERSION:E:S|00|.|g} MAINTAINER= sunpoet@FreeBSD.org COMMENT= Collection of Perl modules for bioinformatics -WWW= https://bioperl.org/ +WWW= https://metacpan.org/dist/BioPerl \ + https://bioperl.org/ LICENSE= ART10 GPLv1+ LICENSE_COMB= dual @@ -29,12 +29,11 @@ RUN_DEPENDS= p5-Data-Stag>=0:devel/p5-Data-Stag \ p5-Test-Most>=0:devel/p5-Test-Most \ p5-Test-RequiresInternet>=0:devel/p5-Test-RequiresInternet \ p5-URI>=0:net/p5-URI \ - p5-XML-DOM-XPath>=0:textproc/p5-XML-DOM-XPath \ p5-XML-DOM>=0:textproc/p5-XML-DOM \ p5-XML-LibXML>=0:textproc/p5-XML-LibXML \ + p5-XML-SAX>=0:textproc/p5-XML-SAX \ p5-XML-SAX-Base>=0:textproc/p5-XML-SAX-Base \ p5-XML-SAX-Writer>=0:textproc/p5-XML-SAX-Writer \ - p5-XML-SAX>=0:textproc/p5-XML-SAX \ p5-XML-Twig>=0:textproc/p5-XML-Twig \ p5-XML-Writer>=0:textproc/p5-XML-Writer \ p5-YAML>=0:textproc/p5-YAML \ diff --git a/biology/p5-BioPerl/distinfo b/biology/p5-BioPerl/distinfo index 35db2f57ddf6..01ab232e2aa9 100644 --- a/biology/p5-BioPerl/distinfo +++ b/biology/p5-BioPerl/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1575793851 -SHA256 (BioPerl-1.7.7.tar.gz) = 730e2bd38b7550bf6bbd5bca50d019a70cca514559702c1389d770ff69cff1bb -SIZE (BioPerl-1.7.7.tar.gz) = 7532782 +TIMESTAMP = 1696904108 +SHA256 (BioPerl-1.7.8.tar.gz) = c490a3be7715ea6e4305efd9710e5edab82dabc55fd786b6505b550a30d71738 +SIZE (BioPerl-1.7.8.tar.gz) = 7527658 diff --git a/biology/p5-BioPerl/pkg-plist b/biology/p5-BioPerl/pkg-plist index afa3cb8732ea..1851c68dcf25 100644 --- a/biology/p5-BioPerl/pkg-plist +++ b/biology/p5-BioPerl/pkg-plist @@ -384,7 +384,6 @@ bin/bp_unflatten_seq %%SITE_PERL%%/Bio/SeqIO/gbxml.pm %%SITE_PERL%%/Bio/SeqIO/gcg.pm %%SITE_PERL%%/Bio/SeqIO/genbank.pm -%%SITE_PERL%%/Bio/SeqIO/interpro.pm %%SITE_PERL%%/Bio/SeqIO/kegg.pm %%SITE_PERL%%/Bio/SeqIO/largefasta.pm %%SITE_PERL%%/Bio/SeqIO/locuslink.pm @@ -896,7 +895,6 @@ bin/bp_unflatten_seq %%PERL5_MAN3%%/Bio::SeqIO::gbxml.3.gz %%PERL5_MAN3%%/Bio::SeqIO::gcg.3.gz %%PERL5_MAN3%%/Bio::SeqIO::genbank.3.gz -%%PERL5_MAN3%%/Bio::SeqIO::interpro.3.gz %%PERL5_MAN3%%/Bio::SeqIO::kegg.3.gz %%PERL5_MAN3%%/Bio::SeqIO::largefasta.3.gz %%PERL5_MAN3%%/Bio::SeqIO::locuslink.3.gz