svn commit: r512461 - head/biology/fastqc
Jason W. Bacon
jwb at FreeBSD.org
Sat Sep 21 02:44:55 UTC 2019
Author: jwb
Date: Sat Sep 21 02:44:54 2019
New Revision: 512461
URL: https://svnweb.freebsd.org/changeset/ports/512461
Log:
biology/fastqc: Upgrade to 0.11.8
Minor bug fixes and edge case handling.
Minor Makefile clean up.
Modified:
head/biology/fastqc/Makefile
head/biology/fastqc/distinfo (contents, props changed)
head/biology/fastqc/pkg-descr (contents, props changed)
Modified: head/biology/fastqc/Makefile
==============================================================================
--- head/biology/fastqc/Makefile Sat Sep 21 02:13:22 2019 (r512460)
+++ head/biology/fastqc/Makefile Sat Sep 21 02:44:54 2019 (r512461)
@@ -1,11 +1,10 @@
# $FreeBSD$
PORTNAME= fastqc
-DISTVERSIONPREFIX= v
-DISTVERSION= 0.11.5
+DISTVERSION= 0.11.8
CATEGORIES= biology java perl5
MASTER_SITES= https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
-DISTNAME= ${PORTNAME}_${DISTVERSIONPREFIX}${DISTVERSION}
+DISTNAME= ${PORTNAME}_v${DISTVERSIONPREFIX}${DISTVERSION}
MAINTAINER= jwb at FreeBSD.org
COMMENT= Quality control tool for high throughput sequence data
@@ -13,14 +12,14 @@ COMMENT= Quality control tool for high throughput sequ
LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/LICENSE.txt
-NO_ARCH= yes
-NO_BUILD= yes
-
USES= zip perl5 shebangfix
-SHEBANG_FILES= fastqc
USE_JAVA= yes
USE_PERL5= run
+SHEBANG_FILES= fastqc
+
+NO_ARCH= yes
+NO_BUILD= yes
WRKSRC= ${WRKDIR}/FastQC
post-patch:
@@ -31,10 +30,9 @@ post-patch:
# Help files are not optional docs, but required for Help menu functionality
do-install:
- ${MKDIR} ${STAGEDIR}${JAVAJARDIR}/fastqc
+ @${MKDIR} ${STAGEDIR}${JAVAJARDIR}/fastqc
${INSTALL_DATA} ${WRKSRC}/*.jar ${STAGEDIR}${JAVAJARDIR}/fastqc
- ${INSTALL_SCRIPT} ${WRKSRC}/fastqc \
- ${STAGEDIR}${PREFIX}/bin
+ ${INSTALL_SCRIPT} ${WRKSRC}/fastqc ${STAGEDIR}${PREFIX}/bin
cd ${WRKSRC} && ${COPYTREE_SHARE} "Configuration Help Templates" \
${STAGEDIR}${DATADIR}
cd ${WRKSRC} && ${COPYTREE_SHARE} "net org uk" \
Modified: head/biology/fastqc/distinfo
==============================================================================
--- head/biology/fastqc/distinfo Sat Sep 21 02:13:22 2019 (r512460)
+++ head/biology/fastqc/distinfo Sat Sep 21 02:44:54 2019 (r512461)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1509737655
-SHA256 (fastqc_v0.11.5.zip) = dd7a5ad80ceed2588cf6d6ffe35e0f161c0d9977ed08355f5e4d9473282cbd66
-SIZE (fastqc_v0.11.5.zip) = 10026429
+TIMESTAMP = 1538750959
+SHA256 (fastqc_v0.11.8.zip) = ca87fe77807e4ac796b6cad949858921fd20652c4038f586f05ece94b5022129
+SIZE (fastqc_v0.11.8.zip) = 10255059
Modified: head/biology/fastqc/pkg-descr
==============================================================================
--- head/biology/fastqc/pkg-descr Sat Sep 21 02:13:22 2019 (r512460)
+++ head/biology/fastqc/pkg-descr Sat Sep 21 02:44:54 2019 (r512461)
@@ -2,6 +2,6 @@ FastQC aims to provide a simple way to do some quality
sequence data coming from high throughput sequencing pipelines. It provides a
modular set of analyses which you can use to give a quick impression of whether
your data has any problems of which you should be aware before doing any
-further analysis.
+further analysis.
WWW: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
More information about the svn-ports-head
mailing list