python packages struggling with GCC 4.7

[William Grzybowski]

Hi,

The main reason foe the python failures, if not all, is math/p-numpy.
It is compiling just fine, but the package is not working:

ImportError: /lib/libgcc_s.so.1: version GCC_4.6.0 required by
/usr/local/lib/gcc47/libgfortran.so.3 not found

Looks like it is linking to /lib/libgcc_s.so.1 and should use
/usr/local/lib/gcc47/libgcc_s.so.1, am I right?

On Tue, Dec 3, 2013 at 11:34 PM, Gerald Pfeifer <gerald at pfeifer.com> wrote:
> Hi there,
>
> in a different context William Grzybowski wrote "If you would like just
> assign the port to python@, we would be happy to take more ports". This
> is not a new port, but I hope you still can help. :-)
>
> I'd like to move USE_GCC=yes to imply GCC 4.7 instead of GCC 4.6.
>
> Generally this works just fine, except for two dozen broken ports
> (C++ and C mostly) and a number of Python ports where there seems
> to be _one_ underlying cause for all breakage.
>
> Below you'll find a link into the ports cluster as well as an overview
> of broken packages.  If you could have a look at those having "py" in
> their name (most others are being looked at already) that'd be great.
>
> Help really appreciated!
>
> Gerald @FreeBSD.org
>
>
> http://package20.nyi.freebsd.org/bulk/91amd64-default-gccupdate/2013-10-22_01h02m27s/
>
>> + {"origin"=>"biology/plink", "pkgname"=>"plink-1.07", "phase"=>"build", "errortype"=>"cluster"}
>> + {"origin"=>"biology/py-biopython", "pkgname"=>"py27-biopython-1.60", "phase"=>"build", "errortype"=>"cluster"}
>> + {"origin"=>"biology/pycogent", "pkgname"=>"pycogent-1.5.3", "phase"=>"configure", "errortype"=>"cluster"}
>> + {"origin"=>"cad/meshlab", "pkgname"=>"meshlab-1.3.2", "phase"=>"build", "errortype"=>"cluster"}
>> + {"origin"=>"devel/freeocl", "pkgname"=>"freeocl-0.3.6", "phase"=>"build", "errortype"=>"cluster"}
>> + {"origin"=>"devel/kdevplatform", "pkgname"=>"kdevplatform-1.5.1", "phase"=>"build", "errortype"=>"process_failed"}
>> + {"origin"=>"devel/love", "pkgname"=>"love-0.8.0_2", "phase"=>"build", "errortype"=>"automake"}
>> + {"origin"=>"devel/love07", "pkgname"=>"love07-0.7.2_3", "phase"=>"build", "errortype"=>"linker_error"}
>> + {"origin"=>"devel/py-ocempgui", "pkgname"=>"py27-ocempgui-0.2.9_5", "phase"=>"configure", "errortype"=>"cluster"}
>> + {"origin"=>"devel/raknet", "pkgname"=>"raknet-3.9.2,1", "phase"=>"build", "errortype"=>"gcc4_error"}
>> + {"origin"=>"games/allacrost", "pkgname"=>"allacrost-1.0.2_5", "phase"=>"build", "errortype"=>"gcc4_error"}
>> + {"origin"=>"games/battletanks", "pkgname"=>"btanks-0.9.8083_5", "phase"=>"build", "errortype"=>"cluster"}
>> + {"origin"=>"games/lugaru", "pkgname"=>"lugaru-269", "phase"=>"build", "errortype"=>"gcc4_error"}
>> + {"origin"=>"games/pydance", "pkgname"=>"pydance-1.1.0_2", "phase"=>"configure", "errortype"=>"cluster"}
>> + {"origin"=>"graphics/mahotas", "pkgname"=>"py27-mahotas-0.9.6", "phase"=>"configure", "errortype"=>"cluster"}
>> + {"origin"=>"graphics/mypaint", "pkgname"=>"mypaint-1.1.0", "phase"=>"build", "errortype"=>"cluster"}
>> + {"origin"=>"graphics/pvmpov", "pkgname"=>"pvmpov-3.1g.2_4", "phase"=>"install", "errortype"=>"linker_error"}
>> + {"origin"=>"graphics/py-opencv", "pkgname"=>"py27-opencv-2.3.1_7", "phase"=>"install", "errortype"=>"makefile"}
>> + {"origin"=>"graphics/pygts", "pkgname"=>"pygts-0.3.1", "phase"=>"configure", "errortype"=>"cluster"}
>> + {"origin"=>"java/openjdk6", "pkgname"=>"openjdk6-b28_2", "phase"=>"build", "errortype"=>"coredump"}
>> + {"origin"=>"lang/ratfor", "pkgname"=>"ratfor-1985.06_2", "phase"=>"build", "errortype"=>"compiler_error"}
>> + {"origin"=>"math/abacus", "pkgname"=>"abacus-3.2.b1", "phase"=>"build", "errortype"=>"gcc4_error"}
>> + {"origin"=>"math/biggles", "pkgname"=>"biggles-1.6.6_2", "phase"=>"build", "errortype"=>"missing_header"}
>> + {"origin"=>"math/gretl", "pkgname"=>"gretl-1.9.12", "phase"=>"build", "errortype"=>"linker_error"}
>> + {"origin"=>"math/octave-forge-fl-core", "pkgname"=>"octave-forge-fl-core-1.0.0_4", "phase"=>"build", "errortype"=>"gcc4_error"}
>> + {"origin"=>"math/octave-forge-parallel", "pkgname"=>"octave-forge-parallel-2.0.5_4", "phase"=>"build", "errortype"=>"gcc4_error"}
>> + {"origin"=>"math/petsc", "pkgname"=>"petsc-2.3.3.p0_7,1", "phase"=>"configure", "errortype"=>"configure_error"}
>> + {"origin"=>"math/py-gnuplot", "pkgname"=>"py27-gnuplot-1.8_4", "phase"=>"configure", "errortype"=>"cluster"}
>> + {"origin"=>"math/py-gsl", "pkgname"=>"py27-gsl-0.9.5_2", "phase"=>"configure", "errortype"=>"cluster"}
>> + {"origin"=>"math/py-matplotlib", "pkgname"=>"py27-matplotlib-1.2.0_1", "phase"=>"configure", "errortype"=>"cluster"}
>> + {"origin"=>"math/py-numexpr", "pkgname"=>"py27-numexpr-2.2.2", "phase"=>"configure", "errortype"=>"cluster"}
>> + {"origin"=>"math/py-pandas", "pkgname"=>"py27-pandas-0.12.0", "phase"=>"build", "errortype"=>"cluster"}
>> + {"origin"=>"math/py-pymc", "pkgname"=>"py27-pymc-2.0,1", "phase"=>"configure", "errortype"=>"cluster"}
>> + {"origin"=>"math/py-symeig", "pkgname"=>"py27-symeig-1.4_2", "phase"=>"configure", "errortype"=>"cluster"}
>> + {"origin"=>"math/superlu_mt", "pkgname"=>"superlu_mt-2.0.20080115_3", "phase"=>"build", "errortype"=>"cluster"}
>> + {"origin"=>"multimedia/freevo", "pkgname"=>"freevo-1.9.0_7", "phase"=>"install", "errortype"=>"cluster"}
>> + {"origin"=>"net/pvm++", "pkgname"=>"pvm++-0.6.0_4", "phase"=>"build", "errortype"=>"linker_error"}
>> + {"origin"=>"net/xpvm", "pkgname"=>"xpvm-1.2.5_1", "phase"=>"build", "errortype"=>"linker_error"}
>> + {"origin"=>"science/ghemical", "pkgname"=>"ghemical-3.0.0", "phase"=>"build", "errortype"=>"linker_error"}
>> + {"origin"=>"science/meep", "pkgname"=>"meep-1.2", "phase"=>"build", "errortype"=>"linker_error"}
>> + {"origin"=>"science/py-h5py", "pkgname"=>"py27-h5py-1.2.1_2", "phase"=>"configure", "errortype"=>"cluster"}
>> + {"origin"=>"science/py-mlpy", "pkgname"=>"py27-mlpy-2.2.2_2", "phase"=>"configure", "errortype"=>"cluster"}
>> + {"origin"=>"science/py-netCDF4", "pkgname"=>"py27-netCDF4-1.0.5", "phase"=>"configure", "errortype"=>"cluster"}
>> + {"origin"=>"science/py-scimath", "pkgname"=>"py27-scimath-4.1.2", "phase"=>"configure", "errortype"=>"cluster"}
>> + {"origin"=>"science/py-scipy", "pkgname"=>"py27-scipy-0.12.1", "phase"=>"configure", "errortype"=>"cluster"}
>> + {"origin"=>"science/pycdf", "pkgname"=>"pycdf-0.6.3", "phase"=>"configure", "errortype"=>"cluster"}
>> + {"origin"=>"science/veusz", "pkgname"=>"veusz-1.17.1", "phase"=>"configure", "errortype"=>"cluster"}
>> + {"origin"=>"textproc/ctpp2", "pkgname"=>"ctpp2-2.8.3", "phase"=>"build", "errortype"=>"gcc4_error"}
>> + {"origin"=>"x11-toolkits/gigi", "pkgname"=>"gigi-0.8.0.1074_1,1", "phase"=>"build", "errortype"=>"cluster"}
>> + {"origin"=>"x11/kactivitymanagerd", "pkgname"=>"kactivitymanagerd-4.10.5_2", "phase"=>"build", "errortype"=>"process_failed"}
> _______________________________________________
> freebsd-python at freebsd.org mailing list
> http://lists.freebsd.org/mailman/listinfo/freebsd-python
> To unsubscribe, send any mail to "freebsd-python-unsubscribe at freebsd.org"



-- 
William Grzybowski
------------------------------------------
Curitiba/PR - Brasil