svn commit: r568921 - in head/biology: . biolibc
Jason W. Bacon
jwb at FreeBSD.org
Sun Mar 21 15:10:18 UTC 2021
Author: jwb
Date: Sun Mar 21 15:10:17 2021
New Revision: 568921
URL: https://svnweb.freebsd.org/changeset/ports/568921
Log:
biology/biolibc: Low-level high-performance bioinformatics library
Biolibc is a library of fast, memory-efficient, low-level functions for
processing biological data. Like libc, it consists of numerous disparate,
general-purpose functions which could be used by a wide variety of
applications. These include functions for streaming common file formats such
as SAM and VCF, string functions specific to bioinformatics, etc.
Added:
head/biology/biolibc/
head/biology/biolibc/Makefile (contents, props changed)
head/biology/biolibc/distinfo (contents, props changed)
head/biology/biolibc/pkg-descr (contents, props changed)
head/biology/biolibc/pkg-plist (contents, props changed)
Modified:
head/biology/Makefile
Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile Sun Mar 21 14:23:31 2021 (r568920)
+++ head/biology/Makefile Sun Mar 21 15:10:17 2021 (r568921)
@@ -12,6 +12,7 @@
SUBDIR += bedtools
SUBDIR += bioawk
SUBDIR += biococoa
+ SUBDIR += biolibc
SUBDIR += bioparser
SUBDIR += biosoup
SUBDIR += bolt-lmm
Added: head/biology/biolibc/Makefile
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/biolibc/Makefile Sun Mar 21 15:10:17 2021 (r568921)
@@ -0,0 +1,16 @@
+# $FreeBSD$
+
+PORTNAME= biolibc
+DISTVERSION= 0.1.1
+CATEGORIES= biology
+
+MAINTAINER= jwb at FreeBSD.org
+COMMENT= Low-level high-performance bioinformatics library
+
+LICENSE= BSD2CLAUSE
+LICENSE_FILE= ${WRKSRC}/LICENSE
+
+USE_GITHUB= yes
+GH_ACCOUNT= auerlab
+
+.include <bsd.port.mk>
Added: head/biology/biolibc/distinfo
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/biolibc/distinfo Sun Mar 21 15:10:17 2021 (r568921)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1616330997
+SHA256 (auerlab-biolibc-0.1.1_GH0.tar.gz) = 0b4a5a63a17998423a583e05e6244369b0c7195c09d2c1c25f1bcde45d7d6388
+SIZE (auerlab-biolibc-0.1.1_GH0.tar.gz) = 11770
Added: head/biology/biolibc/pkg-descr
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/biolibc/pkg-descr Sun Mar 21 15:10:17 2021 (r568921)
@@ -0,0 +1,7 @@
+Biolibc is a library of fast, memory-efficient, low-level functions for
+processing biological data. Like libc, it consists of numerous disparate,
+general-purpose functions which could be used by a wide variety of
+applications. These include functions for streaming common file formats such
+as SAM and VCF, string functions specific to bioinformatics, etc.
+
+WWW: https://github.com/auerlab/vcfio
Added: head/biology/biolibc/pkg-plist
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/biolibc/pkg-plist Sun Mar 21 15:10:17 2021 (r568921)
@@ -0,0 +1,6 @@
+include/biostring.h
+include/dsvio.h
+include/samio.h
+include/vcfio.h
+lib/libbiolibc.a
+man/man1/biolibc.1.gz
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