svn commit: r568501 - in head/biology: . generand

[Jason W. Bacon]

Author: jwb
Date: Mon Mar 15 20:09:28 2021
New Revision: 568501
URL: https://svnweb.freebsd.org/changeset/ports/568501

Log:
  biology/generand: Generate random genomic data in FAST[AQ], SAM, or VCF format
  
  Generate random genomic data in FASTA/FASTQ, SAM, or VCF format, suitable for
  small academic examples or test inputs of arbitrary size.  Output can be piped
  directly to programs or redirected to a file and edited to taste.

Added:
  head/biology/generand/
  head/biology/generand/Makefile   (contents, props changed)
  head/biology/generand/distinfo   (contents, props changed)
  head/biology/generand/pkg-descr   (contents, props changed)
Modified:
  head/biology/Makefile

Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile	Mon Mar 15 19:58:59 2021	(r568500)
+++ head/biology/Makefile	Mon Mar 15 20:09:28 2021	(r568501)
@@ -48,6 +48,7 @@
     SUBDIR += gatk
     SUBDIR += gcta
     SUBDIR += gemma
+    SUBDIR += generand
     SUBDIR += gff2ps
     SUBDIR += gmap
     SUBDIR += gperiodic

Added: head/biology/generand/Makefile
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/generand/Makefile	Mon Mar 15 20:09:28 2021	(r568501)
@@ -0,0 +1,18 @@
+# $FreeBSD$
+
+PORTNAME=	generand
+DISTVERSION=	0.1.1
+CATEGORIES=	biology
+
+MAINTAINER=	jwb at FreeBSD.org
+COMMENT=	Generate random genomic data in FASTA/FASTQ, SAM, or VCF format
+
+LICENSE=	BSD2CLAUSE
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+USE_GITHUB=	yes
+GH_ACCOUNT=	auerlab
+
+PLIST_FILES=	bin/generand man/man1/generand.1.gz
+
+.include <bsd.port.mk>

Added: head/biology/generand/distinfo
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/generand/distinfo	Mon Mar 15 20:09:28 2021	(r568501)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1615760855
+SHA256 (auerlab-generand-0.1.1_GH0.tar.gz) = 5e1b8099a4f9704e0241be184a54b2fbe76f556f58bc743bfc6992971d52d038
+SIZE (auerlab-generand-0.1.1_GH0.tar.gz) = 6481

Added: head/biology/generand/pkg-descr
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/generand/pkg-descr	Mon Mar 15 20:09:28 2021	(r568501)
@@ -0,0 +1,5 @@
+Generate random genomic data in FASTA/FASTQ, SAM, or VCF format, suitable for
+small academic examples or test inputs of arbitrary size.  Output can be piped
+directly to programs or redirected to a file and edited to taste.
+
+WWW: https://github.com/auerlab/generand