svn commit: r528792 - head/biology/canu
Jason W. Bacon
jwb at FreeBSD.org
Fri Mar 20 18:14:24 UTC 2020
Author: jwb
Date: Fri Mar 20 18:14:23 2020
New Revision: 528792
URL: https://svnweb.freebsd.org/changeset/ports/528792
Log:
biology/canu: Upgrade to 2.0
Several routine enhancements and bug fixes
Reported by: portscout
Modified:
head/biology/canu/Makefile
head/biology/canu/distinfo
head/biology/canu/pkg-plist
Modified: head/biology/canu/Makefile
==============================================================================
--- head/biology/canu/Makefile Fri Mar 20 17:44:37 2020 (r528791)
+++ head/biology/canu/Makefile Fri Mar 20 18:14:23 2020 (r528792)
@@ -2,8 +2,7 @@
PORTNAME= canu
DISTVERSIONPREFIX= v
-DISTVERSION= 1.9
-PORTREVISION= 1
+DISTVERSION= 2.0
CATEGORIES= biology java perl5
MAINTAINER= jwb at FreeBSD.org
@@ -41,9 +40,6 @@ pre-configure:
-e 's|-funroll-loops||g' \
-e 's|-fexpensive-optimizations||g' \
${WRKSRC}/Makefile
- @${REINPLACE_CMD} \
- -e 's|\\$$bin/mhap-|${JAVAJARDIR}/mhap-|g' \
- ${WRKSRC}/pipelines/canu/OverlapMhap.pm
@${REINPLACE_CMD} \
-e 's|RealBin/lib|RealBin/../${SITE_PERL_REL}/canu|g' \
${WRKSRC}/pipelines/canu.pl
Modified: head/biology/canu/distinfo
==============================================================================
--- head/biology/canu/distinfo Fri Mar 20 17:44:37 2020 (r528791)
+++ head/biology/canu/distinfo Fri Mar 20 18:14:23 2020 (r528792)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1573142752
-SHA256 (marbl-canu-v1.9_GH0.tar.gz) = 6b086ab6086c050752166500378bc4b3b3543d4c617863e894d296171cee3385
-SIZE (marbl-canu-v1.9_GH0.tar.gz) = 3410307
+TIMESTAMP = 1584624503
+SHA256 (marbl-canu-v2.0_GH0.tar.gz) = e2e6e8b5ec4dd4cfba5e372f4a64b2c01fbd544d4b5867746021f10771a6f4ef
+SIZE (marbl-canu-v2.0_GH0.tar.gz) = 3443777
Modified: head/biology/canu/pkg-plist
==============================================================================
--- head/biology/canu/pkg-plist Fri Mar 20 17:44:37 2020 (r528791)
+++ head/biology/canu/pkg-plist Fri Mar 20 18:14:23 2020 (r528792)
@@ -41,7 +41,6 @@ bin/sequence
bin/splitHaplotype
bin/splitReads
bin/sqStoreCreate
-bin/sqStoreCreatePartition
bin/sqStoreDumpFASTQ
bin/sqStoreDumpMetaData
bin/tgStoreCompress
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