svn commit: r492059 - in head/biology: . prodigy-lig

[Yuri Victorovich]

Author: yuri
Date: Sun Feb  3 18:49:23 2019
New Revision: 492059
URL: https://svnweb.freebsd.org/changeset/ports/492059

Log:
  New port: biology/prodigy-lig: Prediction of protein-small molecule binding affinities

Added:
  head/biology/prodigy-lig/
  head/biology/prodigy-lig/Makefile   (contents, props changed)
  head/biology/prodigy-lig/distinfo   (contents, props changed)
  head/biology/prodigy-lig/pkg-descr   (contents, props changed)
Modified:
  head/biology/Makefile

Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile	Sun Feb  3 18:08:14 2019	(r492058)
+++ head/biology/Makefile	Sun Feb  3 18:49:23 2019	(r492059)
@@ -102,6 +102,7 @@
     SUBDIR += plinkseq
     SUBDIR += primer3
     SUBDIR += prodigal
+    SUBDIR += prodigy-lig
     SUBDIR += protomol
     SUBDIR += psi88
     SUBDIR += py-Genesis-PyAPI

Added: head/biology/prodigy-lig/Makefile
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/prodigy-lig/Makefile	Sun Feb  3 18:49:23 2019	(r492059)
@@ -0,0 +1,25 @@
+# $FreeBSD$
+
+PORTNAME=	prodigy-lig
+DISTVERSIONPREFIX=	v
+DISTVERSION=	1.0.0-3
+DISTVERSIONSUFFIX=	-g152ac59
+CATEGORIES=	biology python
+
+MAINTAINER=	yuri at FreeBSD.org
+COMMENT=	Prediction of protein-small molecule binding affinities
+
+LICENSE=	APACHE20
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+BUILD_DEPENDS=	${PYNUMPY} \
+		${PYTHON_PKGNAMEPREFIX}biopython>0:biology/py-biopython@${PY_FLAVOR}
+
+USES=		gmake python:3.5+
+USE_GITHUB=	yes
+GH_ACCOUNT=	haddocking
+USE_PYTHON=	distutils noflavors autoplist
+
+NO_ARCH=	yes
+
+.include <bsd.port.mk>

Added: head/biology/prodigy-lig/distinfo
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/prodigy-lig/distinfo	Sun Feb  3 18:49:23 2019	(r492059)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1549219115
+SHA256 (haddocking-prodigy-lig-v1.0.0-3-g152ac59_GH0.tar.gz) = abf9e9e0baf2e91d306e3a297705f2c5a50149b145cdf64b990e25d9efa28731
+SIZE (haddocking-prodigy-lig-v1.0.0-3-g152ac59_GH0.tar.gz) = 155336

Added: head/biology/prodigy-lig/pkg-descr
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/prodigy-lig/pkg-descr	Sun Feb  3 18:49:23 2019	(r492059)
@@ -0,0 +1,5 @@
+PRODIGY-LIG (PROtein binDIng enerGY prediction - LIGands) is a structure-based
+method for the prediction of binding affinity in protein-small ligand (such as
+drugs or metabolites) complexes.
+
+WWW: https://nestor.science.uu.nl/prodigy/lig