svn commit: r497621 - in head/science/coot: . files

Yuri Victorovich yuri at FreeBSD.org
Wed Apr 3 05:01:13 UTC 2019 

Author: yuri
Date: Wed Apr  3 05:01:11 2019
New Revision: 497621
URL: https://svnweb.freebsd.org/changeset/ports/497621

Log:
  science/coot: Update 0.8.9.1 -> 0.8.9.2
  
  * Add goocanvas dependency
  * Add fftw dependency
  
  Reported by:	portscout

Modified:
  head/science/coot/Makefile
  head/science/coot/distinfo
  head/science/coot/files/patch-src_cc-interface-image.hh
  head/science/coot/pkg-plist

Modified: head/science/coot/Makefile
==============================================================================
--- head/science/coot/Makefile	Wed Apr  3 04:41:20 2019	(r497620)
+++ head/science/coot/Makefile	Wed Apr  3 05:01:11 2019	(r497621)
@@ -1,8 +1,7 @@
 # $FreeBSD$
 
 PORTNAME=	coot
-DISTVERSION=	0.8.9.1
-PORTREVISION=	2
+DISTVERSION=	0.8.9.2
 CATEGORIES=	science
 MASTER_SITES=	https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/${PORTNAME}/source/releases/ \
 		https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/${PORTNAME}/dependencies/:data
@@ -15,11 +14,13 @@ COMMENT=	Crystallographic Object-Oriented Toolkit
 LICENSE=	LGPL3
 LICENSE_FILE=	${WRKSRC}/COPYING
 
+BUILD_DEPENDS=	fftw>0:math/fftw
 LIB_DEPENDS=	libccp4c.so:science/libccp4 \
 		libclipper-core.so:science/clipper \
 		libcurl.so:ftp/curl \
 		libfontconfig.so:x11-fonts/fontconfig \
 		libfreetype.so:print/freetype2 \
+		libgoocanvas.so:graphics/goocanvas \
 		libgtkglext-x11-1.0.so:x11-toolkits/gtkglext \
 		libgsl.so:math/gsl \
 		libmmdb2.so:science/mmdb2 \
@@ -31,7 +32,7 @@ RUN_DEPENDS=	bash:shells/bash
 USES=		desktop-file-utils fortran gettext-runtime gl gmake gnome libtool localbase:ldflags pkgconfig python:2.7 shebangfix sqlite
 SHEBANG_FILES=	src/coot.in
 GNU_CONFIGURE=	yes
-CONFIGURE_ARGS=	--enable-shared --disable-static
+CONFIGURE_ARGS=	--enable-shared --disable-static --with-goocanvas-prefix=${LOCALBASE}
 USE_GNOME=	atk cairo gdkpixbuf2 glib20 gtk20 libartlgpl2 libgnomecanvas pango pangox-compat
 USE_GL=		gl glu glut
 USE_XORG=	ice sm x11 xmu xt

Modified: head/science/coot/distinfo
==============================================================================
--- head/science/coot/distinfo	Wed Apr  3 04:41:20 2019	(r497620)
+++ head/science/coot/distinfo	Wed Apr  3 05:01:11 2019	(r497621)
@@ -1,6 +1,6 @@
-TIMESTAMP = 1531013796
-SHA256 (coot/coot-0.8.9.1.tar.gz) = 51b6faef11177a8ab682fbe28448f935ae1252ad53b4efa31339ff658a63ff94
-SIZE (coot/coot-0.8.9.1.tar.gz) = 19360553
+TIMESTAMP = 1554259683
+SHA256 (coot/coot-0.8.9.2.tar.gz) = f24ed258e43ea31452b54c62649c071aa15f356d077dce0dab94eb04f27a6625
+SIZE (coot/coot-0.8.9.2.tar.gz) = 19635513
 SHA256 (coot/refmac-monomer-library.tar.gz) = 03562eec612103a48bd114cfe0d171943e88f94b84610d16d542cda138e5f36b
 SIZE (coot/refmac-monomer-library.tar.gz) = 37439851
 SHA256 (coot/reference-structures.tar.gz) = 44db38506f0f90c097d4855ad81a82a36b49cd1e3ffe7d6ee4728b15109e281a

Modified: head/science/coot/files/patch-src_cc-interface-image.hh
==============================================================================
--- head/science/coot/files/patch-src_cc-interface-image.hh	Wed Apr  3 04:41:20 2019	(r497620)
+++ head/science/coot/files/patch-src_cc-interface-image.hh	Wed Apr  3 05:01:11 2019	(r497621)
@@ -1,7 +1,8 @@
---- src/cc-interface-image.hh.orig	2018-07-08 02:10:49 UTC
+--- src/cc-interface-image.hh.orig	2018-06-08 16:50:29 UTC
 +++ src/cc-interface-image.hh
-@@ -1,4 +1,5 @@
+@@ -1,5 +1,6 @@
  
+ #ifdef USE_PYTHON
 +#include <Python.h>
  
  // make a png given the info in text_info_dict

Modified: head/science/coot/pkg-plist
==============================================================================
--- head/science/coot/pkg-plist	Wed Apr  3 04:41:20 2019	(r497620)
+++ head/science/coot/pkg-plist	Wed Apr  3 05:01:11 2019	(r497621)
@@ -24,11 +24,15 @@ include/coot/ccp4mg-utils/mgtree.h
 include/coot/ccp4mg-utils/ppmutil.h
 include/coot/ccp4mg-utils/quat.h
 include/coot/compat/coot-getopt.h
+include/coot/compat/coot-sysdep.h
+include/coot/compat/getopt_int.h
+include/coot/compat/sleep-fixups.h
 include/coot/coords/Bond_lines.h
 include/coot/coords/Bond_lines_ext.h
 include/coot/coords/Cartesian.h
 include/coot/coords/coot-close.hh
 include/coot/coords/cos-sin.h
+include/coot/coords/loop-path.hh
 include/coot/coords/mmdb-crystal.h
 include/coot/coords/mmdb-extras.h
 include/coot/coords/mmdb.h
@@ -89,10 +93,12 @@ include/coot/ideal/lograma.h
 include/coot/ideal/model-bond-deltas.hh
 include/coot/ideal/parallel-planes.hh
 include/coot/ideal/pepflip.hh
+include/coot/ideal/phi-psi.hh
 include/coot/ideal/regularize-minimol.hh
 include/coot/ideal/simple-restraint.hh
 include/coot/ideal/test-indexing.hh
 include/coot/ideal/torsion-bonds.hh
+include/coot/ideal/zo-rama.hh
 include/coot/lbg/alerts.hh
 include/coot/lbg/graphics-c-interface-functions.hh
 include/coot/lbg/lbg-drag-and-drop.hh
@@ -260,6 +266,9 @@ lib/libcootilus.so.0.0.0
 %%PYTHON_SITELIBDIR%%/coot/acedrg_link.py
 %%PYTHON_SITELIBDIR%%/coot/acedrg_link.pyc
 %%PYTHON_SITELIBDIR%%/coot/acedrg_link.pyo
+%%PYTHON_SITELIBDIR%%/coot/add_linked_cho.py
+%%PYTHON_SITELIBDIR%%/coot/add_linked_cho.pyc
+%%PYTHON_SITELIBDIR%%/coot/add_linked_cho.pyo
 %%PYTHON_SITELIBDIR%%/coot/americanisms.py
 %%PYTHON_SITELIBDIR%%/coot/americanisms.pyc
 %%PYTHON_SITELIBDIR%%/coot/americanisms.pyo
@@ -299,6 +308,9 @@ lib/libcootilus.so.0.0.0
 %%PYTHON_SITELIBDIR%%/coot/coot_lsq.py
 %%PYTHON_SITELIBDIR%%/coot/coot_lsq.pyc
 %%PYTHON_SITELIBDIR%%/coot/coot_lsq.pyo
+%%PYTHON_SITELIBDIR%%/coot/coot_output_to_window.py
+%%PYTHON_SITELIBDIR%%/coot/coot_output_to_window.pyc
+%%PYTHON_SITELIBDIR%%/coot/coot_output_to_window.pyo
 %%PYTHON_SITELIBDIR%%/coot/coot_toolbuttons.py
 %%PYTHON_SITELIBDIR%%/coot/coot_toolbuttons.pyc
 %%PYTHON_SITELIBDIR%%/coot/coot_toolbuttons.pyo
@@ -320,6 +332,9 @@ lib/libcootilus.so.0.0.0
 %%PYTHON_SITELIBDIR%%/coot/filter.py
 %%PYTHON_SITELIBDIR%%/coot/filter.pyc
 %%PYTHON_SITELIBDIR%%/coot/filter.pyo
+%%PYTHON_SITELIBDIR%%/coot/find_baddies.py
+%%PYTHON_SITELIBDIR%%/coot/find_baddies.pyc
+%%PYTHON_SITELIBDIR%%/coot/find_baddies.pyo
 %%PYTHON_SITELIBDIR%%/coot/fitting.py
 %%PYTHON_SITELIBDIR%%/coot/fitting.pyc
 %%PYTHON_SITELIBDIR%%/coot/fitting.pyo
@@ -14126,6 +14141,7 @@ share/applications/coot.desktop
 %%DATADIR%%/link-by-torsion-to-FUC-core-ALPHA1-2.tab
 %%DATADIR%%/link-by-torsion-to-FUC-core-ALPHA1-3.tab
 %%DATADIR%%/link-by-torsion-to-FUC-core-ALPHA1-6.tab
+%%DATADIR%%/link-by-torsion-to-NAG-core-NAG-SER.tab
 %%DATADIR%%/link-by-torsion-to-pyranose-core-ALPHA1-2.tab
 %%DATADIR%%/link-by-torsion-to-pyranose-core-ALPHA1-3.tab
 %%DATADIR%%/link-by-torsion-to-pyranose-core-ALPHA1-6.tab
@@ -14183,13 +14199,14 @@ share/applications/coot.desktop
 %%DATADIR%%/pixmaps/connect-to-oca.svg
 %%DATADIR%%/pixmaps/connect-to-usf.svg
 %%DATADIR%%/pixmaps/connect-to-world.svg
-%%DATADIR%%/pixmaps/coot-0.8.9.1.png
+%%DATADIR%%/pixmaps/coot-0.8.9.2.png
 %%DATADIR%%/pixmaps/coot-favicon.png
 %%DATADIR%%/pixmaps/coot-icon.png
 %%DATADIR%%/pixmaps/coot-save-symm.png
 %%DATADIR%%/pixmaps/coot-save.png
 %%DATADIR%%/pixmaps/crosshairs.png
 %%DATADIR%%/pixmaps/crosshairs.svg
+%%DATADIR%%/pixmaps/curlew-long.png
 %%DATADIR%%/pixmaps/delete.png
 %%DATADIR%%/pixmaps/delete.svg
 %%DATADIR%%/pixmaps/density-fit.svg
@@ -14250,6 +14267,13 @@ share/applications/coot.desktop
 %%DATADIR%%/pixmaps/pointer-distances.svg
 %%DATADIR%%/pixmaps/probe-clash.svg
 %%DATADIR%%/pixmaps/radacina_handcuffs-small.svg
+%%DATADIR%%/pixmaps/rama2_all.png
+%%DATADIR%%/pixmaps/rama2_gly.png
+%%DATADIR%%/pixmaps/rama2_ileval.png
+%%DATADIR%%/pixmaps/rama2_non_gly_pro.png
+%%DATADIR%%/pixmaps/rama2_non_gly_pro_pre_pro_ileval.png
+%%DATADIR%%/pixmaps/rama2_pre_pro.png
+%%DATADIR%%/pixmaps/rama2_pro.png
 %%DATADIR%%/pixmaps/rama_all.png
 %%DATADIR%%/pixmaps/rama_gly.png
 %%DATADIR%%/pixmaps/rama_non_gly_pro.png
@@ -14391,6 +14415,7 @@ share/applications/coot.desktop
 %%DATADIR%%/scheme/0-auto-rot.scm
 %%DATADIR%%/scheme/3d-generator-import.scm
 %%DATADIR%%/scheme/acedrg-link.scm
+%%DATADIR%%/scheme/add-linked-cho.scm
 %%DATADIR%%/scheme/americanisms.scm
 %%DATADIR%%/scheme/background-demo.scm
 %%DATADIR%%/scheme/bit.scm
@@ -14415,6 +14440,7 @@ share/applications/coot.desktop
 %%DATADIR%%/scheme/fascinating-things.scm
 %%DATADIR%%/scheme/file-utils.scm
 %%DATADIR%%/scheme/filter.scm
+%%DATADIR%%/scheme/find-baddies.scm
 %%DATADIR%%/scheme/fitting.scm
 %%DATADIR%%/scheme/gap.scm
 %%DATADIR%%/scheme/generic-objects.scm

More information about the svn-ports-head mailing list