svn commit: r480173 - head/biology/py-cutadapt
Jason W. Bacon
jwb at FreeBSD.org
Thu Sep 20 14:10:53 UTC 2018
Author: jwb
Date: Thu Sep 20 14:10:52 2018
New Revision: 480173
URL: https://svnweb.freebsd.org/changeset/ports/480173
Log:
biology/py-cutadapt: Upgrade to 1.18
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D17099
Deleted:
head/biology/py-cutadapt/pkg-plist
Modified:
head/biology/py-cutadapt/Makefile
head/biology/py-cutadapt/distinfo (contents, props changed)
Modified: head/biology/py-cutadapt/Makefile
==============================================================================
--- head/biology/py-cutadapt/Makefile Thu Sep 20 14:06:19 2018 (r480172)
+++ head/biology/py-cutadapt/Makefile Thu Sep 20 14:10:52 2018 (r480173)
@@ -1,20 +1,22 @@
# $FreeBSD$
PORTNAME= cutadapt
-PORTVERSION= 1.14
+PORTVERSION= 1.18
CATEGORIES= biology python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= jwb at FreeBSD.org
-COMMENT= Finds and removes adapter sequences, primers, poly-A tails, etc
+COMMENT= Trim adapters from high-throughput sequencing reads
LICENSE= MIT
+LICENSE_FILE= ${WRKSRC}/LICENSE
-RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen>0:archivers/py-xopen@${PY_FLAVOR}
+RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen>=0.3.2:archivers/py-xopen@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}bz2file>=0.98:archivers/py-bz2file@${PY_FLAVOR}
USES= python
-USE_PYTHON= distutils py3kplist
+USE_PYTHON= autoplist concurrent distutils
post-install:
@${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/cutadapt/*.so
Modified: head/biology/py-cutadapt/distinfo
==============================================================================
--- head/biology/py-cutadapt/distinfo Thu Sep 20 14:06:19 2018 (r480172)
+++ head/biology/py-cutadapt/distinfo Thu Sep 20 14:10:52 2018 (r480173)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1509552013
-SHA256 (cutadapt-1.14.tar.gz) = f32990a8b2f8b53f8f4c723ada3d256a8e8476febdd296506764cc8e83397d3d
-SIZE (cutadapt-1.14.tar.gz) = 283631
+TIMESTAMP = 1536508727
+SHA256 (cutadapt-1.18.tar.gz) = 17aabf9b19d09a426d96030a83ad003c97b26dba9d45bf5570d33088fcd533f9
+SIZE (cutadapt-1.18.tar.gz) = 342050
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