svn commit: r485989 - in head/misc: . snakemake
Yuri Victorovich
yuri at FreeBSD.org
Tue Nov 27 08:05:38 UTC 2018
Author: yuri
Date: Tue Nov 27 08:05:36 2018
New Revision: 485989
URL: https://svnweb.freebsd.org/changeset/ports/485989
Log:
New port: snakemake/Makefile: Workflow management system
Added:
head/misc/snakemake/
head/misc/snakemake/Makefile (contents, props changed)
head/misc/snakemake/distinfo (contents, props changed)
head/misc/snakemake/pkg-descr (contents, props changed)
Modified:
head/misc/Makefile
Modified: head/misc/Makefile
==============================================================================
--- head/misc/Makefile Tue Nov 27 07:53:33 2018 (r485988)
+++ head/misc/Makefile Tue Nov 27 08:05:36 2018 (r485989)
@@ -507,6 +507,7 @@
SUBDIR += sloccount
SUBDIR += sls
SUBDIR += smssend
+ SUBDIR += snakemake
SUBDIR += soapysdr
SUBDIR += solarized
SUBDIR += spamcalc
Added: head/misc/snakemake/Makefile
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/misc/snakemake/Makefile Tue Nov 27 08:05:36 2018 (r485989)
@@ -0,0 +1,29 @@
+# $FreeBSD$
+
+PORTNAME= snakemake
+DISTVERSION= 5.3.0
+CATEGORIES= misc
+MASTER_SITES= CHEESESHOP
+
+MAINTAINER= yuri at FreeBSD.org
+COMMENT= Workflow management system
+
+LICENSE= MIT
+
+RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}appdirs>0:devel/py-appdirs@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}configargparse>0:devel/py-configargparse@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}datrie>0:devel/py-datrie@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}docutils>0:textproc/py-docutils@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}GitPython>0:devel/py-gitpython@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}jsonschema>0:devel/py-jsonschema@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}ratelimiter>0:devel/py-ratelimiter@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}wrapt>0:devel/py-wrapt@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}yaml>0:devel/py-yaml@${PY_FLAVOR}
+
+USES= python:3.5+
+USE_PYTHON= distutils autoplist
+
+NO_ARCH= yes
+
+.include <bsd.port.mk>
Added: head/misc/snakemake/distinfo
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/misc/snakemake/distinfo Tue Nov 27 08:05:36 2018 (r485989)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1543303780
+SHA256 (snakemake-5.3.0.tar.gz) = 612a16f2bba580c47183e4f752ed40b034852541ca3e96e480d01fb30ad9570c
+SIZE (snakemake-5.3.0.tar.gz) = 168283
Added: head/misc/snakemake/pkg-descr
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/misc/snakemake/pkg-descr Tue Nov 27 08:05:36 2018 (r485989)
@@ -0,0 +1,7 @@
+Snakemake is a workflow management system that aims to reduce the complexity of
+creating workflows by providing a fast and comfortable execution environment,
+together with a clean and modern specification language in python style.
+Snakemake workflows are essentially Python scripts extended by declarative code
+to define rules. Rules describe how to create output files from input files.
+
+WWW: https://bitbucket.org/snakemake/snakemake/src/master/
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