svn commit: r437680 - head/science/vmd/files
David Naylor
dbn at FreeBSD.org
Tue Apr 4 05:19:54 UTC 2017
Author: dbn
Date: Tue Apr 4 05:19:52 2017
New Revision: 437680
URL: https://svnweb.freebsd.org/changeset/ports/437680
Log:
science/vmd: unbreak build
- Remove patches that are not required with the new sources for stride
- Add stride license test
Added:
head/science/vmd/files/patch-lib_stride_Makefile (contents, props changed)
head/science/vmd/files/stride.txt (contents, props changed)
Deleted:
head/science/vmd/files/patch-plugins__hesstrans__Makefile
head/science/vmd/files/patch-stride.c
head/science/vmd/files/patch-stride.h
head/science/vmd/files/patch-stride_Makefile
Added: head/science/vmd/files/patch-lib_stride_Makefile
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/science/vmd/files/patch-lib_stride_Makefile Tue Apr 4 05:19:52 2017 (r437680)
@@ -0,0 +1,26 @@
+--- lib/stride/Makefile.orig 2003-04-08 12:03:14 UTC
++++ lib/stride/Makefile
+@@ -1,12 +1,12 @@
+ #FLAGS = -lm -L/usr/pub/lib -lefence -o
+ #CC = cc -O2 -fullwarn -TENV:large_GOT
+ #CC = cc -g -Wall
+-CC = gcc -O2 # at least for SunOS
++#CC = gcc -O2 # at least for SunOS
+ #CC = cc -g
+
+ #CC = cc -O2 -fullwarn
+
+-#CC = cc -O2
++CC = cc ${CFLAGS} -O2
+ FLAGS = -lm -o
+
+ SOURCE = stride.c splitstr.c rdpdb.c initchn.c geometry.c thr2one.c one2thr.c filename.c tolostr.c strutil.c place_h.c hbenergy.c memory.c helix.c sheet.c rdmap.c phipsi.c command.c molscr.c die.c hydrbond.c mergepat.c fillasn.c escape.c p_jrnl.c p_rem.c p_atom.c p_helix.c p_sheet.c p_turn.c p_ssbond.c p_expdta.c p_model.c p_compnd.c report.c nsc.c area.c ssbond.c chk_res.c chk_atom.c turn.c pdbasn.c dssp.c outseq.c chkchain.c elem.c measure.c asngener.c p_endmdl.c stred.c contact_order.c contact_map.c
+@@ -20,7 +20,7 @@ BINDIR = .
+
+
+ stride : $(OBJECT)
+- $(CC) $(OBJECT) $(FLAGS) $(BINDIR)/stride${ARCH}
++ $(CC) $(OBJECT) $(FLAGS) $(BINDIR)/stride
+
+ $(OBJECT) : stride.h protot.h
+
Added: head/science/vmd/files/stride.txt
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/science/vmd/files/stride.txt Tue Apr 4 05:19:52 2017 (r437680)
@@ -0,0 +1,24 @@
+All rights reserved, whether the whole or part of the program is
+concerned. Permission to use, copy, and modify this software and its
+documentation is granted for academic use, provided that:
+
+ i. this copyright notice appears in all copies of the software and
+ related documentation;
+
+ ii. the reference given below (Frishman and Argos, 1995) must be
+ cited in any publication of scientific results based in part or
+ completely on the use of the program;
+
+iii. bugs will be reported to the authors.
+
+The use of the software in commercial activities is not allowed
+without a prior written commercial license agreement.
+
+WARNING: STRIDE is provided "as-is" and without warranty of any kind,
+express, implied or otherwise, including without limitation any
+warranty of merchantability or fitness for a particular purpose. In no
+event will the authors be liable for any special, incidental, indirect
+or consequential damages of any kind, or any damages whatsoever
+resulting from loss of data or profits, whether or not advised of the
+possibility of damage, and on any theory of liability, arising out of
+or in connection with the use or performance of this software.
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