svn commit: r425863 - in head/biology/seqtools: . files
Kurt Jaeger
pi at FreeBSD.org
Fri Nov 11 06:19:12 UTC 2016
Author: pi
Date: Fri Nov 11 06:19:10 2016
New Revision: 425863
URL: https://svnweb.freebsd.org/changeset/ports/425863
Log:
biology/seqtools: update 4.43.0 -> 4.44.1
- Blixem: Features can now be added to multiple different groups/filters.
- Belvu: Fix a problem where column highlighting can get out of sync
with the text.
Added:
head/biology/seqtools/files/
head/biology/seqtools/files/patch-gbtools_src_blatSrc_lib_gff3.c (contents, props changed)
Modified:
head/biology/seqtools/Makefile
head/biology/seqtools/distinfo
Modified: head/biology/seqtools/Makefile
==============================================================================
--- head/biology/seqtools/Makefile Fri Nov 11 06:09:12 2016 (r425862)
+++ head/biology/seqtools/Makefile Fri Nov 11 06:19:10 2016 (r425863)
@@ -1,7 +1,7 @@
# $FreeBSD$
PORTNAME= seqtools
-PORTVERSION= 4.43.0
+PORTVERSION= 4.44.1
CATEGORIES= biology
MASTER_SITES= ftp://ftp.sanger.ac.uk/pub4/resources/software/seqtools/PRODUCTION/
Modified: head/biology/seqtools/distinfo
==============================================================================
--- head/biology/seqtools/distinfo Fri Nov 11 06:09:12 2016 (r425862)
+++ head/biology/seqtools/distinfo Fri Nov 11 06:19:10 2016 (r425863)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1469510431
-SHA256 (seqtools-4.43.0.tar.gz) = 01861098451eab001d49a039e60ddc6df22a61a7472924c850942ffdae396c8b
-SIZE (seqtools-4.43.0.tar.gz) = 6862548
+TIMESTAMP = 1478810582
+SHA256 (seqtools-4.44.1.tar.gz) = 0e1dd7087d1180e434f0ea1aac21b8dfb5261195581ec3ba012abf0d1e39daa9
+SIZE (seqtools-4.44.1.tar.gz) = 6922888
Added: head/biology/seqtools/files/patch-gbtools_src_blatSrc_lib_gff3.c
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/seqtools/files/patch-gbtools_src_blatSrc_lib_gff3.c Fri Nov 11 06:19:10 2016 (r425863)
@@ -0,0 +1,10 @@
+--- gbtools/src/blatSrc/lib/gff3.c.orig 2016-11-10 21:14:27 UTC
++++ gbtools/src/blatSrc/lib/gff3.c
+@@ -7,6 +7,7 @@
+ /* Copyright (C) 2014 The Regents of the University of California
+ * See README in this or parent directory for licensing information. */
+ #include "common.h"
++#include "dnaseq.h"
+ #include "gff3.h"
+ #include <limits.h>
+ #include "errAbort.h"
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