svn commit: r417195 - in head/biology/wise: . files

[Dmitry Marakasov]

Author: amdmi3
Date: Tue Jun 21 09:05:06 2016
New Revision: 417195
URL: https://svnweb.freebsd.org/changeset/ports/417195

Log:
  - Switch to options helpers
  - Regenerate patches with `make makepatch`

Modified:
  head/biology/wise/Makefile
  head/biology/wise/files/patch-src_models_phasemodel.c

Modified: head/biology/wise/Makefile
==============================================================================
--- head/biology/wise/Makefile	Tue Jun 21 08:36:56 2016	(r417194)
+++ head/biology/wise/Makefile	Tue Jun 21 09:05:06 2016	(r417195)
@@ -10,8 +10,6 @@ DISTNAME=	${PORTNAME}${PORTVERSION}
 MAINTAINER=	ports at FreeBSD.org
 COMMENT=	Intelligent algorithms for DNA searches
 
-OPTIONS_DEFINE=	DOCS EXAMPLES
-
 BUILD_WRKSRC=	${WRKSRC}/src
 
 USES=		pkgconfig
@@ -20,10 +18,6 @@ MAKEFILE=	makefile
 
 SUB_FILES=	pkg-message
 
-PORTDOCS=	*
-PORTEXAMPLES=	*
-PLIST_FILES=	${BINFILES:S,^,bin/,} ${DATAFILES:S,^,%%DATADIR%%/,}
-
 #
 # Actually want an 'ALL_TARGET = all perl' which then requires
 # 'USE_PERL5= yes' but the perl sub-build is currently broken.
@@ -42,6 +36,12 @@ DATAFILES=	BLOSUM30.bla BLOSUM45.bla BLO
 		human.stats idenity.bla methods pb.gf pombe.gf tm.pri \
 		wise.2 wise.per worm.gf
 
+PORTDOCS=	*
+PORTEXAMPLES=	*
+PLIST_FILES=	${BINFILES:S,^,bin/,} ${DATAFILES:S,^,%%DATADIR%%/,}
+
+OPTIONS_DEFINE=	DOCS EXAMPLES
+
 post-patch:
 	@${FIND} ${BUILD_WRKSRC} -name "makefile" | ${XARGS} \
 		${REINPLACE_CMD} -e \
@@ -60,8 +60,12 @@ do-install:
 	@${MKDIR} ${STAGEDIR}${DATADIR}
 	(cd ${WRKSRC}/wisecfg && ${INSTALL_DATA} ${DATAFILES} \
 		${STAGEDIR}${DATADIR})
+
+do-install-DOCS-on:
 	@${MKDIR} ${STAGEDIR}${DOCSDIR}
 	(cd ${WRKSRC}/docs && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR})
+
+do-install-EXAMPLES-on:
 	@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
 	(cd ${WRKSRC}/test_data && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR})
 

Modified: head/biology/wise/files/patch-src_models_phasemodel.c
==============================================================================
--- head/biology/wise/files/patch-src_models_phasemodel.c	Tue Jun 21 08:36:56 2016	(r417194)
+++ head/biology/wise/files/patch-src_models_phasemodel.c	Tue Jun 21 09:05:06 2016	(r417195)
@@ -1,4 +1,4 @@
---- src/models/phasemodel.c.orig	2007-09-08 08:05:32.000000000 +0000
+--- src/models/phasemodel.c.orig	2007-09-08 08:05:32 UTC
 +++ src/models/phasemodel.c
 @@ -3,6 +3,10 @@ extern "C" {
  #endif