svn commit: r429002 - head/biology/cd-hit
Joseph Mingrone
jrm at FreeBSD.org
Tue Dec 20 16:48:13 UTC 2016
Author: jrm
Date: Tue Dec 20 16:48:12 2016
New Revision: 429002
URL: https://svnweb.freebsd.org/changeset/ports/429002
Log:
biology/cd-hit: Update to bug-fix release 4.6.6
Changes in version 4.6.6:
Bug fix for cd-hit-dup in variable length input when write out R1 reads
Changes in version 4.6.5:
Add filter for -aL option so that short sequences will be skipped if not
satisfy representative sequences' -aL requirement. This will make compute
faster in clustering settings where sequences in the same cluster are
required to have similar length using -aL -AL option (e.g. -aL 0.9).
Approved by: AMDmi3 (mentor) swills (mentor)
Differential Revision: https://reviews.freebsd.org/D8186
Modified:
head/biology/cd-hit/Makefile
head/biology/cd-hit/distinfo
Modified: head/biology/cd-hit/Makefile
==============================================================================
--- head/biology/cd-hit/Makefile Tue Dec 20 16:45:39 2016 (r429001)
+++ head/biology/cd-hit/Makefile Tue Dec 20 16:48:12 2016 (r429002)
@@ -2,8 +2,7 @@
# $FreeBSD$
PORTNAME= cd-hit
-PORTVERSION= 4.6.4
-PORTREVISION= 1
+PORTVERSION= 4.6.6
DISTVERSIONPREFIX= V
CATEGORIES= biology
@@ -17,7 +16,6 @@ GH_ACCOUNT= weizhongli
GH_PROJECT= cdhit
USES= compiler:openmp gmake shebangfix
-WRKSRC= ${WRKDIR}/cdhit-${PORTVERSION}
SHEBANG_FILES= ${WRKSRC}/*.pl
MAKE_FLAGS= openmp=yes
Modified: head/biology/cd-hit/distinfo
==============================================================================
--- head/biology/cd-hit/distinfo Tue Dec 20 16:45:39 2016 (r429001)
+++ head/biology/cd-hit/distinfo Tue Dec 20 16:48:12 2016 (r429002)
@@ -1,2 +1,3 @@
-SHA256 (weizhongli-cdhit-V4.6.4_GH0.tar.gz) = b170108147ec91d8b5f9d10b9e8d5fd971e7aef3af6ec1e5542cbaf10d54b2fc
-SIZE (weizhongli-cdhit-V4.6.4_GH0.tar.gz) = 1148426
+TIMESTAMP = 1482076217
+SHA256 (weizhongli-cdhit-V4.6.6_GH0.tar.gz) = a0c89c969ad338f958620083b12bc69fa30fcba8246a7ec0b6243e5b2ba0365d
+SIZE (weizhongli-cdhit-V4.6.6_GH0.tar.gz) = 1149112
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