svn commit: r428942 - in head/biology: . p5-Bio-Coordinate

[Sunpoet Po-Chuan Hsieh]

Author: sunpoet
Date: Mon Dec 19 15:54:39 2016
New Revision: 428942
URL: https://svnweb.freebsd.org/changeset/ports/428942

Log:
  - Add p5-Bio-Coordinate 1.007001
  
  Bio::Coordinate classes are used for working with various biological coordinate
  systems. See Bio::Coordinate::Collection and Bio::Collection::Pair for examples.
  
  WWW: http://search.cpan.org/dist/Bio-Coordinate/

Added:
  head/biology/p5-Bio-Coordinate/
  head/biology/p5-Bio-Coordinate/Makefile   (contents, props changed)
  head/biology/p5-Bio-Coordinate/distinfo   (contents, props changed)
  head/biology/p5-Bio-Coordinate/pkg-descr   (contents, props changed)
  head/biology/p5-Bio-Coordinate/pkg-plist   (contents, props changed)
Modified:
  head/biology/Makefile

Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile	Mon Dec 19 15:54:34 2016	(r428941)
+++ head/biology/Makefile	Mon Dec 19 15:54:39 2016	(r428942)
@@ -58,6 +58,7 @@
     SUBDIR += njplot
     SUBDIR += p5-AcePerl
     SUBDIR += p5-Bio-ASN1-EntrezGene
+    SUBDIR += p5-Bio-Coordinate
     SUBDIR += p5-Bio-Das
     SUBDIR += p5-Bio-Das-Lite
     SUBDIR += p5-Bio-GFF3

Added: head/biology/p5-Bio-Coordinate/Makefile
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/p5-Bio-Coordinate/Makefile	Mon Dec 19 15:54:39 2016	(r428942)
@@ -0,0 +1,24 @@
+# Created by: Sunpoet Po-Chuan Hsieh <sunpoet at FreeBSD.org>
+# $FreeBSD$
+
+PORTNAME=	Bio-Coordinate
+PORTVERSION=	1.007001
+CATEGORIES=	biology perl5
+MASTER_SITES=	CPAN
+PKGNAMEPREFIX=	p5-
+
+MAINTAINER=	sunpoet at FreeBSD.org
+COMMENT=	Modules for working with biological coordinates
+
+LICENSE=	ART10 GPLv1
+LICENSE_COMB=	dual
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+BUILD_DEPENDS=	p5-BioPerl>=1.007000:biology/p5-BioPerl
+RUN_DEPENDS:=	${BUILD_DEPENDS}
+
+NO_ARCH=	yes
+USE_PERL5=	configure
+USES=		perl5
+
+.include <bsd.port.mk>

Added: head/biology/p5-Bio-Coordinate/distinfo
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/p5-Bio-Coordinate/distinfo	Mon Dec 19 15:54:39 2016	(r428942)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1482042798
+SHA256 (Bio-Coordinate-1.007001.tar.gz) = 63c0a652ec60a2a905d71c85c08b96fcfb12fc784cac8a5d029eb9647d45d619
+SIZE (Bio-Coordinate-1.007001.tar.gz) = 44111

Added: head/biology/p5-Bio-Coordinate/pkg-descr
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/p5-Bio-Coordinate/pkg-descr	Mon Dec 19 15:54:39 2016	(r428942)
@@ -0,0 +1,4 @@
+Bio::Coordinate classes are used for working with various biological coordinate
+systems. See Bio::Coordinate::Collection and Bio::Collection::Pair for examples.
+
+WWW: http://search.cpan.org/dist/Bio-Coordinate/

Added: head/biology/p5-Bio-Coordinate/pkg-plist
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/p5-Bio-Coordinate/pkg-plist	Mon Dec 19 15:54:39 2016	(r428942)
@@ -0,0 +1,26 @@
+%%SITE_PERL%%/Bio/Coordinate.pm
+%%SITE_PERL%%/Bio/Coordinate/Chain.pm
+%%SITE_PERL%%/Bio/Coordinate/Collection.pm
+%%SITE_PERL%%/Bio/Coordinate/ExtrapolatingPair.pm
+%%SITE_PERL%%/Bio/Coordinate/GeneMapper.pm
+%%SITE_PERL%%/Bio/Coordinate/Graph.pm
+%%SITE_PERL%%/Bio/Coordinate/MapperI.pm
+%%SITE_PERL%%/Bio/Coordinate/Pair.pm
+%%SITE_PERL%%/Bio/Coordinate/Result.pm
+%%SITE_PERL%%/Bio/Coordinate/Result/Gap.pm
+%%SITE_PERL%%/Bio/Coordinate/Result/Match.pm
+%%SITE_PERL%%/Bio/Coordinate/ResultI.pm
+%%SITE_PERL%%/Bio/Coordinate/Utils.pm
+%%PERL5_MAN3%%/Bio::Coordinate.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::Chain.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::Collection.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::ExtrapolatingPair.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::GeneMapper.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::Graph.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::MapperI.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::Pair.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::Result.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::Result::Gap.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::Result::Match.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::ResultI.3.gz
+%%PERL5_MAN3%%/Bio::Coordinate::Utils.3.gz