svn commit: r428868 - in head/biology: . p5-BioPerl p5-bioperl
Sunpoet Po-Chuan Hsieh
sunpoet at FreeBSD.org
Sun Dec 18 15:25:05 UTC 2016
Author: sunpoet
Date: Sun Dec 18 15:25:04 2016
New Revision: 428868
URL: https://svnweb.freebsd.org/changeset/ports/428868
Log:
- Move biology/p5-bioperl to biology/p5-BioPerl
- Sort *_DEPENDS
- Bump PORTREVISION for dependent ports
Added:
head/biology/p5-BioPerl/
- copied from r428867, head/biology/p5-bioperl/
Deleted:
head/biology/p5-bioperl/
Modified:
head/biology/Makefile
head/biology/p5-BioPerl/Makefile
Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile Sun Dec 18 15:23:25 2016 (r428867)
+++ head/biology/Makefile Sun Dec 18 15:25:04 2016 (r428868)
@@ -67,7 +67,7 @@
SUBDIR += p5-Bio-NEXUS
SUBDIR += p5-Bio-Phylo
SUBDIR += p5-Bio-SCF
- SUBDIR += p5-bioperl
+ SUBDIR += p5-BioPerl
SUBDIR += p5-bioperl-run
SUBDIR += p5-transdecoder
SUBDIR += paml
Modified: head/biology/p5-BioPerl/Makefile
==============================================================================
--- head/biology/p5-bioperl/Makefile Sun Dec 18 15:23:25 2016 (r428867)
+++ head/biology/p5-BioPerl/Makefile Sun Dec 18 15:25:04 2016 (r428868)
@@ -1,14 +1,13 @@
# Created by: Johann Visagie <johann at egenetics.com>
# $FreeBSD$
-PORTNAME= bioperl
+PORTNAME= BioPerl
PORTVERSION= 1.6.924
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= biology perl5
MASTER_SITES= CPAN
MASTER_SITE_SUBDIR= CPAN:CJFIELDS
PKGNAMEPREFIX= p5-
-DISTNAME= BioPerl-${PORTVERSION}
MAINTAINER= perl at FreeBSD.org
COMMENT= Collection of Perl modules for bioinformatics
@@ -21,8 +20,8 @@ BUILD_DEPENDS= p5-Algorithm-Munkres>=0:m
p5-Class-AutoClass>=0:devel/p5-Class-AutoClass \
p5-Clone>=0:devel/p5-Clone \
p5-Convert-Binary-C>=0:converters/p5-Convert-Binary-C \
- p5-Data-Stag>=0:devel/p5-Data-Stag \
p5-DBD-mysql>=0:databases/p5-DBD-mysql \
+ p5-Data-Stag>=0:devel/p5-Data-Stag \
p5-Error>=0:lang/p5-Error \
p5-GD>=0:graphics/p5-GD \
p5-GD-SVG>=0:graphics/p5-GD-SVG \
@@ -30,16 +29,16 @@ BUILD_DEPENDS= p5-Algorithm-Munkres>=0:m
p5-GraphViz>=0:graphics/p5-GraphViz \
p5-HTML-Parser>=0:www/p5-HTML-Parser \
p5-HTML-TableExtract>=2:www/p5-HTML-TableExtract \
- p5-IO-stringy>=0:devel/p5-IO-stringy \
p5-IO-String>=0:devel/p5-IO-String \
+ p5-IO-stringy>=0:devel/p5-IO-stringy \
p5-Math-Random>=0:math/p5-Math-Random \
p5-PostScript>=0:print/p5-PostScript \
p5-SOAP-Lite>=0:net/p5-SOAP-Lite \
+ p5-SVG>=0:textproc/p5-SVG \
+ p5-SVG-Graph>=0:graphics/p5-SVG-Graph \
p5-Set-Scalar>=0:devel/p5-Set-Scalar \
p5-Sort-Naturally>=1:textproc/p5-Sort-Naturally \
p5-Spreadsheet-ParseExcel>=0:textproc/p5-Spreadsheet-ParseExcel \
- p5-SVG>=0:textproc/p5-SVG \
- p5-SVG-Graph>=0:graphics/p5-SVG-Graph \
p5-Test-Most>=0:devel/p5-Test-Most \
p5-Text-Shellwords>=0:textproc/p5-Text-Shellwords \
p5-Text-Tabs+Wrap>=0:textproc/p5-Text-Tabs+Wrap \
@@ -56,7 +55,6 @@ BUILD_DEPENDS= p5-Algorithm-Munkres>=0:m
p5-YAML>=0:textproc/p5-YAML \
p5-libwww>=0:www/p5-libwww \
p5-libxml>=0:textproc/p5-libxml
-
RUN_DEPENDS:= ${BUILD_DEPENDS}
USES= perl5
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