svn commit: r392119 - head/biology/ugene

[Alexey Dokuchaev]

Author: danfe
Date: Wed Jul 15 07:18:08 2015
New Revision: 392119
URL: https://svnweb.freebsd.org/changeset/ports/392119

Log:
  - Update Unipro UGENE to version 1.17.0 (documentation was also rerolled)
  - Remove no longer required local source code tweaks (picked up upstream)

Modified:
  head/biology/ugene/Makefile
  head/biology/ugene/distinfo

Modified: head/biology/ugene/Makefile
==============================================================================
--- head/biology/ugene/Makefile	Wed Jul 15 05:59:48 2015	(r392118)
+++ head/biology/ugene/Makefile	Wed Jul 15 07:18:08 2015	(r392119)
@@ -2,7 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	ugene
-DISTVERSION=	1.16.2
+DISTVERSION=	1.17.0
 CATEGORIES=	biology science
 MASTER_SITES=	http://ugene.unipro.ru/downloads/
 DISTFILES=	${DISTNAME}${EXTRACT_SUFX} QueryDesigner_UserManual.pdf \
@@ -66,17 +66,12 @@ post-patch:
 	@${REINPLACE_CMD} -e 's|/bin/bash|/usr/bin/env bash|' \
 		${WRKSRC}/src/gen_bin_script.cmd \
 		${WRKSRC}/installer/_common_data/ugene
-	@${REINPLACE_CMD} -e '/readproc\.h/d' \
-		${WRKSRC}/src/corelibs/U2Core/src/globals/AppResources.cpp
 	@${REINPLACE_CMD} -e 's|-bit version|& for ${OPSYS}|' \
 		${WRKSRC}/src/ugeneui/src/main_window/AboutDialogController.cpp
-	@${REINPLACE_CMD} -e '/ifdef/s|Q_OS_LINUX|Q_OS_UNIX|' \
-		${WRKSRC}/src/corelibs/U2Test/src/gui_tests/GUITestLauncher.cpp
+	@${REINPLACE_CMD} -e '/unix_not_mac/,+11d' \
+		${WRKSRC}/src/corelibs/U2Core/U2Core.pri
 .for x in ugenecl ugeneui plugins_checker
 	@${ECHO_CMD} 'LIBS += -lexecinfo' >> ${WRKSRC}/src/${x}/${x}.pro
 .endfor
-# remove BOM that gcc4.2 trips upon
-	@env LANG=C ${REINPLACE_CMD} -e 's,^...,,' \
-		${WRKSRC}/src/include/U2Formats/MysqlUpgradeTask.h
 
 .include <bsd.port.post.mk>

Modified: head/biology/ugene/distinfo
==============================================================================
--- head/biology/ugene/distinfo	Wed Jul 15 05:59:48 2015	(r392118)
+++ head/biology/ugene/distinfo	Wed Jul 15 07:18:08 2015	(r392119)
@@ -1,8 +1,8 @@
-SHA256 (ugene/ugene-1.16.2.tar.gz) = 6d001d57d7a3d46285173f7a00c307d43cc760e72e8b9f04c5c4cc0717a7078f
-SIZE (ugene/ugene-1.16.2.tar.gz) = 20604313
-SHA256 (ugene/QueryDesigner_UserManual.pdf) = d261125f8ad155ae022a47ecf504febfb45ae7740f822be9b0c508219bb732fb
-SIZE (ugene/QueryDesigner_UserManual.pdf) = 824789
-SHA256 (ugene/UniproUGENE_UserManual.pdf) = 94683abe849eecc88735d7748e75f4e30051d1dc8a6b148dbeb3d2ac4ed02a1d
-SIZE (ugene/UniproUGENE_UserManual.pdf) = 13237321
-SHA256 (ugene/WorkflowDesigner_UserManual.pdf) = 9dec38e2e5c89f6dbde328bf5ef17d81f5d1309812b8d2c5cf5864c1ad159eff
-SIZE (ugene/WorkflowDesigner_UserManual.pdf) = 22805160
+SHA256 (ugene/ugene-1.17.0.tar.gz) = d265a8a7d066e6cac2eeaa89645eb0ce1c0debeb9b321d80cea4a5595c082e08
+SIZE (ugene/ugene-1.17.0.tar.gz) = 20706555
+SHA256 (ugene/QueryDesigner_UserManual.pdf) = 17d7a68fdc9fc7ca2538c0b99a98a1f53cf664dc6207f98d9e4318eb35920847
+SIZE (ugene/QueryDesigner_UserManual.pdf) = 855679
+SHA256 (ugene/UniproUGENE_UserManual.pdf) = feee2712f81d24a84deb2f91fc0b13d64f051ff9c8b0129e862f8daafa8065a9
+SIZE (ugene/UniproUGENE_UserManual.pdf) = 13358880
+SHA256 (ugene/WorkflowDesigner_UserManual.pdf) = cc63575ccf85bf66ab8594c7209ee0628dd1a84165375f955eb5a191bbc5e233
+SIZE (ugene/WorkflowDesigner_UserManual.pdf) = 29393258