svn commit: r404418 - in head/science/py-DendroPy: . files
Carlo Strub
cs at FreeBSD.org
Fri Dec 25 12:30:52 UTC 2015
Author: cs
Date: Fri Dec 25 12:30:50 2015
New Revision: 404418
URL: https://svnweb.freebsd.org/changeset/ports/404418
Log:
Update to 4.0.3
Deleted:
head/science/py-DendroPy/files/
Modified:
head/science/py-DendroPy/Makefile
head/science/py-DendroPy/distinfo
head/science/py-DendroPy/pkg-plist
Modified: head/science/py-DendroPy/Makefile
==============================================================================
--- head/science/py-DendroPy/Makefile Fri Dec 25 12:16:41 2015 (r404417)
+++ head/science/py-DendroPy/Makefile Fri Dec 25 12:30:50 2015 (r404418)
@@ -2,8 +2,7 @@
# $FreeBSD$
PORTNAME= DendroPy
-PORTVERSION= 3.12.0
-PORTREVISION= 1
+PORTVERSION= 4.0.3
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
Modified: head/science/py-DendroPy/distinfo
==============================================================================
--- head/science/py-DendroPy/distinfo Fri Dec 25 12:16:41 2015 (r404417)
+++ head/science/py-DendroPy/distinfo Fri Dec 25 12:30:50 2015 (r404418)
@@ -1,2 +1,2 @@
-SHA256 (DendroPy-3.12.0.tar.gz) = 38a0f36f2f7aae43ec5599408b0d0a4c80996b749589f025940d955a70fc82d4
-SIZE (DendroPy-3.12.0.tar.gz) = 6631147
+SHA256 (DendroPy-4.0.3.tar.gz) = a2c074eb91e2866120521c076587983900c5b312879832c3559effb730bd4465
+SIZE (DendroPy-4.0.3.tar.gz) = 16330973
Modified: head/science/py-DendroPy/pkg-plist
==============================================================================
--- head/science/py-DendroPy/pkg-plist Fri Dec 25 12:16:41 2015 (r404417)
+++ head/science/py-DendroPy/pkg-plist Fri Dec 25 12:30:50 2015 (r404418)
@@ -1,77 +1,118 @@
-bin/cattrees.py
-bin/long_branch_symmdiff.py
-bin/strict_consensus_merge.py
-bin/sumlabels.py
bin/sumtrees.py
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+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/treecollectionmodel.pyc
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@@ -96,55 +137,138 @@ bin/sumtrees.py
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+%%PYTHON_SITELIBDIR%%/dendropy/test/__main__.py
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+%%PYTHON_SITELIBDIR%%/dendropy/test/benchmark/benchmark_newick_light_tree_parser.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/test/benchmark/benchmark_newick_light_tree_parser.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/test/benchmark/benchmark_newick_tree_parser.py
+%%PYTHON_SITELIBDIR%%/dendropy/test/benchmark/benchmark_newick_tree_parser.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/test/benchmark/benchmark_newick_tree_parser.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/test/benchmark/benchmark_tokenizer.py
+%%PYTHON_SITELIBDIR%%/dendropy/test/benchmark/benchmark_tokenizer.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/test/benchmark/benchmark_tokenizer.pyo
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@@ -157,6 +281,7 @@ bin/sumtrees.py
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%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/caenophidia_mos.chars.txt
+%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/cetaceans.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/codons.nexml
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@@ -166,6 +291,7 @@ bin/sumtrees.py
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%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/orti.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.csv
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@@ -186,14 +312,367 @@ bin/sumtrees.py
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@@ -204,8 +683,12 @@ bin/sumtrees.py
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