svn commit: r337026 - in head/biology/clustalw: . files
Wen Heping
wen at FreeBSD.org
Fri Dec 20 15:29:07 UTC 2013
Author: wen
Date: Fri Dec 20 15:29:07 2013
New Revision: 337026
URL: http://svnweb.freebsd.org/changeset/ports/337026
Log:
- Fix build with clang/libc++.
- Support staging.
PR: 184974
Submitted by: tijl@
Added:
head/biology/clustalw/files/
head/biology/clustalw/files/patch-src-general-VectorOutOfRange.h (contents, props changed)
Modified:
head/biology/clustalw/Makefile
Modified: head/biology/clustalw/Makefile
==============================================================================
--- head/biology/clustalw/Makefile Fri Dec 20 15:27:26 2013 (r337025)
+++ head/biology/clustalw/Makefile Fri Dec 20 15:29:07 2013 (r337026)
@@ -10,7 +10,7 @@ MASTER_SITES= ftp://ftp.ebi.ac.uk/pub/so
MASTER_SITE_SUBDIR= ${PORTVERSION}
MAINTAINER= wen at FreeBSD.org
-COMMENT= A multiple alignment program for DNA or proteins
+COMMENT= Multiple alignment program for DNA or proteins
RESTRICTED= No commercial use.
@@ -20,8 +20,7 @@ GNU_CONFIGURE= yes
PLIST_FILES= bin/clustalw bin/clustalw2
-NO_STAGE= yes
post-install:
- ${LN} -sf clustalw2 ${PREFIX}/bin/clustalw
+ ${LN} -sf clustalw2 ${STAGEDIR}${PREFIX}/bin/clustalw
.include <bsd.port.mk>
Added: head/biology/clustalw/files/patch-src-general-VectorOutOfRange.h
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/clustalw/files/patch-src-general-VectorOutOfRange.h Fri Dec 20 15:29:07 2013 (r337026)
@@ -0,0 +1,10 @@
+--- src/general/VectorOutOfRange.h.orig 2013-12-20 23:16:13.000000000 +0800
++++ src/general/VectorOutOfRange.h 2013-12-20 23:16:37.000000000 +0800
+@@ -5,6 +5,7 @@
+ */
+ #include <stdexcept>
+ #include <exception>
++#include <string>
+ namespace clustalw
+ {
+
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