svn commit: r562035 - in head/biology: . biosoup
Yuri Victorovich
yuri at FreeBSD.org
Tue Jan 19 09:01:42 UTC 2021
Author: yuri
Date: Tue Jan 19 09:01:41 2021
New Revision: 562035
URL: https://svnweb.freebsd.org/changeset/ports/562035
Log:
New port: biology/biosoup: Collection of C++ header-only data structures for bioinformatics
Added:
head/biology/biosoup/
head/biology/biosoup/Makefile (contents, props changed)
head/biology/biosoup/distinfo (contents, props changed)
head/biology/biosoup/pkg-descr (contents, props changed)
Modified:
head/biology/Makefile
Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile Tue Jan 19 08:35:04 2021 (r562034)
+++ head/biology/Makefile Tue Jan 19 09:01:41 2021 (r562035)
@@ -13,6 +13,7 @@
SUBDIR += bioawk
SUBDIR += biococoa
SUBDIR += bioparser
+ SUBDIR += biosoup
SUBDIR += bolt-lmm
SUBDIR += bowtie
SUBDIR += bowtie2
Added: head/biology/biosoup/Makefile
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/biosoup/Makefile Tue Jan 19 09:01:41 2021 (r562035)
@@ -0,0 +1,38 @@
+# $FreeBSD$
+
+PORTNAME= biosoup
+DISTVERSION= g20201216
+CATEGORIES= biology devel
+
+MAINTAINER= yuri at FreeBSD.org
+COMMENT= Collection of C++ header-only data structures for bioinformatics
+
+LICENSE= MIT
+LICENSE_FILE= ${WRKSRC}/LICENSE
+
+TEST_DEPENDS= googletest>0:devel/googletest
+
+USES= cmake
+
+USE_GITHUB= yes
+GH_ACCOUNT= rvaser
+GH_TAGNAME= e2b39f1
+
+NO_ARCH= yes
+
+PLIST_FILES= include/biosoup/nucleic_acid.hpp \
+ include/biosoup/overlap.hpp \
+ include/biosoup/progress_bar.hpp \
+ include/biosoup/sequence.hpp \
+ include/biosoup/timer.hpp
+
+do-install:
+ cd ${WRKSRC}/include && ${COPYTREE_SHARE} ${PORTNAME} ${STAGEDIR}${PREFIX}/include
+
+do-test:
+ @cd ${BUILD_WRKSRC} && \
+ ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -D${PORTNAME}_build_tests:BOOL=ON ${CMAKE_SOURCE_PATH} && \
+ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \
+ ${BUILD_WRKSRC}/bin/${PORTNAME}_test
+
+.include <bsd.port.mk>
Added: head/biology/biosoup/distinfo
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/biosoup/distinfo Tue Jan 19 09:01:41 2021 (r562035)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1611046547
+SHA256 (rvaser-biosoup-g20201216-e2b39f1_GH0.tar.gz) = fe122e65d1691ca781584d8bb42538c5904852ccbb1ec48bc13aa2652b0f9ddc
+SIZE (rvaser-biosoup-g20201216-e2b39f1_GH0.tar.gz) = 6979
Added: head/biology/biosoup/pkg-descr
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/biosoup/pkg-descr Tue Jan 19 09:01:41 2021 (r562035)
@@ -0,0 +1,4 @@
+Biosoup is a c++ collection of header only data structures used for storage and
+logging in bioinformatics tools.
+
+WWW: https://github.com/rvaser/biosoup
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