svn commit: r549977 - head/biology/py-biom-format
Joseph Mingrone
jrm at FreeBSD.org
Fri Sep 25 01:03:04 UTC 2020
Author: jrm
Date: Fri Sep 25 01:03:03 2020
New Revision: 549977
URL: https://svnweb.freebsd.org/changeset/ports/549977
Log:
biology/py-biom-format: Update to version 2.1.8
Upstream changes:
https://github.com/biocore/biom-format/releases/tag/2.1.8
Modified:
head/biology/py-biom-format/Makefile (contents, props changed)
head/biology/py-biom-format/distinfo (contents, props changed)
Modified: head/biology/py-biom-format/Makefile
==============================================================================
--- head/biology/py-biom-format/Makefile Thu Sep 24 23:58:13 2020 (r549976)
+++ head/biology/py-biom-format/Makefile Fri Sep 25 01:03:03 2020 (r549977)
@@ -1,8 +1,7 @@
# $FreeBSD$
PORTNAME= biom-format
-PORTVERSION= 2.1.7
-PORTREVISION= 3
+PORTVERSION= 2.1.8
CATEGORIES= biology python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
@@ -12,26 +11,19 @@ COMMENT= Biological Observation Matrix (BIOM) Format P
LICENSE= BSD3CLAUSE
-DEPRECATED= Uses deprecated version of python
-EXPIRATION_DATE= 2020-08-15
-
BUILD_DEPENDS= ${PYNUMPY}
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}click>0:devel/py-click@${PY_FLAVOR} \
${PYNUMPY} \
${PYTHON_PKGNAMEPREFIX}future>=0.16.0:devel/py-future@${PY_FLAVOR} \
- ${PYTHON_PKGNAMEPREFIX}scipy>=0.13.0:science/py-scipy@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}scipy>=1.3.1:science/py-scipy@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}pandas>=0.20.0:math/py-pandas@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}h5py>=2.2.0:science/py-h5py@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}six>=1.10.0:devel/py-six@${PY_FLAVOR}
-USES= python:-3.6
-USE_PYTHON= autoplist concurrent distutils
+USES= python:3.6+
+USE_PYTHON= autoplist concurrent cython distutils
.include <bsd.port.pre.mk>
-
-.if ${PYTHON_REL} < 3000
-RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}pyqi>0:devel/py-pyqi@${PY_FLAVOR}
-.endif
post-extract:
${RM} -r ${WRKSRC}/tests
Modified: head/biology/py-biom-format/distinfo
==============================================================================
--- head/biology/py-biom-format/distinfo Thu Sep 24 23:58:13 2020 (r549976)
+++ head/biology/py-biom-format/distinfo Fri Sep 25 01:03:03 2020 (r549977)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1538769748
-SHA256 (biom-format-2.1.7.tar.gz) = b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4
-SIZE (biom-format-2.1.7.tar.gz) = 11820666
+TIMESTAMP = 1579317018
+SHA256 (biom-format-2.1.8.tar.gz) = 4d8813f84f7a79ee8c367e6ef57e154a121198b3979b81c74e6514668b756827
+SIZE (biom-format-2.1.8.tar.gz) = 12206773
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