svn commit: r549476 - in head/biology/freebayes: . files

[Stefan Eßer]

Author: se
Date: Mon Sep 21 18:14:57 2020
New Revision: 549476
URL: https://svnweb.freebsd.org/changeset/ports/549476

Log:
  Fix build with -fno-common

Added:
  head/biology/freebayes/files/patch-SeqLib_bwa_rle.h   (contents, props changed)
  head/biology/freebayes/files/patch-SeqLib_fermi-lite_rle.h   (contents, props changed)
Modified:
  head/biology/freebayes/Makefile

Modified: head/biology/freebayes/Makefile
==============================================================================
--- head/biology/freebayes/Makefile	Mon Sep 21 18:12:57 2020	(r549475)
+++ head/biology/freebayes/Makefile	Mon Sep 21 18:14:57 2020	(r549476)
@@ -3,7 +3,7 @@
 PORTNAME=		freebayes
 DISTVERSIONPREFIX=	v
 DISTVERSION=		1.2.0
-PORTREVISION=	2
+PORTREVISION=		3
 CATEGORIES=		biology
 
 MAINTAINER=	jwb at FreeBSD.org

Added: head/biology/freebayes/files/patch-SeqLib_bwa_rle.h
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/freebayes/files/patch-SeqLib_bwa_rle.h	Mon Sep 21 18:14:57 2020	(r549476)
@@ -0,0 +1,11 @@
+--- SeqLib/bwa/rle.h.orig	2016-10-13 18:10:17 UTC
++++ SeqLib/bwa/rle.h
+@@ -30,7 +30,7 @@ extern "C" {
+  *** 43+3 codec ***
+  ******************/
+ 
+-const uint8_t rle_auxtab[8];
++extern const uint8_t rle_auxtab[8];
+ 
+ #define RLE_MIN_SPACE 18
+ #define rle_nptr(block) ((uint16_t*)(block))

Added: head/biology/freebayes/files/patch-SeqLib_fermi-lite_rle.h
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/freebayes/files/patch-SeqLib_fermi-lite_rle.h	Mon Sep 21 18:14:57 2020	(r549476)
@@ -0,0 +1,11 @@
+--- SeqLib/fermi-lite/rle.h.orig	2016-09-01 20:47:53 UTC
++++ SeqLib/fermi-lite/rle.h
+@@ -30,7 +30,7 @@ extern "C" {
+  *** 43+3 codec ***
+  ******************/
+ 
+-const uint8_t rle_auxtab[8];
++extern const uint8_t rle_auxtab[8];
+ 
+ #define RLE_MIN_SPACE 18
+ #define rle_nptr(block) ((uint16_t*)(block))