svn commit: r543010 - in head/biology: . rubygem-bio-executables
Sunpoet Po-Chuan Hsieh
sunpoet at FreeBSD.org
Fri Jul 24 07:08:01 UTC 2020
Author: sunpoet
Date: Fri Jul 24 07:08:00 2020
New Revision: 543010
URL: https://svnweb.freebsd.org/changeset/ports/543010
Log:
Add rubygem-bio-executables 1.0.0
bio-executables is a collection of miscellaneous utilities for bioinformatics
that were formerly part of the BioRuby core ("bio" gem). Because of reducing
complexity, they were moved to this gem.
This code has historically been part of the BioRuby gem, but has been split into
its own gem as part of an effort to modularize BioRuby. bio-executables and many
more plugins are available at biogems.info.
WWW: https://github.com/bioruby/bioruby-executables
Added:
head/biology/rubygem-bio-executables/
head/biology/rubygem-bio-executables/Makefile (contents, props changed)
head/biology/rubygem-bio-executables/distinfo (contents, props changed)
head/biology/rubygem-bio-executables/pkg-descr (contents, props changed)
Modified:
head/biology/Makefile
Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile Fri Jul 24 07:07:54 2020 (r543009)
+++ head/biology/Makefile Fri Jul 24 07:08:00 2020 (r543010)
@@ -148,6 +148,7 @@
SUBDIR += recombine
SUBDIR += ruby-bio
SUBDIR += rubygem-bio
+ SUBDIR += rubygem-bio-executables
SUBDIR += samtools
SUBDIR += scrm
SUBDIR += seaview
Added: head/biology/rubygem-bio-executables/Makefile
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/rubygem-bio-executables/Makefile Fri Jul 24 07:08:00 2020 (r543010)
@@ -0,0 +1,30 @@
+# Created by: Po-Chuan Hsieh <sunpoet at FreeBSD.org>
+# $FreeBSD$
+
+PORTNAME= bio-executables
+PORTVERSION= 1.0.0
+CATEGORIES= biology rubygems
+MASTER_SITES= RG
+
+MAINTAINER= sunpoet at FreeBSD.org
+COMMENT= Collection of miscellaneous utilities for bioinformatics
+
+LICENSE= BSD2CLAUSE RUBY
+LICENSE_COMB= dual
+LICENSE_FILE_BSD2CLAUSE=${WRKSRC}/BSDL
+LICENSE_FILE_RUBY= ${WRKSRC}/COPYING
+
+RUN_DEPENDS= rubygem-bio>=2.0.0:biology/rubygem-bio \
+ rubygem-bio-old-biofetch-emulator>=0.0.1:biology/rubygem-bio-old-biofetch-emulator
+
+USES= gem
+USE_RUBY= yes
+
+NO_ARCH= yes
+
+PLIST_FILES= bin/br_biofetch.rb \
+ bin/br_bioflat.rb \
+ bin/br_biogetseq.rb \
+ bin/br_pmfetch.rb
+
+.include <bsd.port.mk>
Added: head/biology/rubygem-bio-executables/distinfo
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/rubygem-bio-executables/distinfo Fri Jul 24 07:08:00 2020 (r543010)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1595416507
+SHA256 (rubygem/bio-executables-1.0.0.gem) = 29f02115bc543d7f39b0c6d4c518719dcae9d112a913c215b988b599a6736b91
+SIZE (rubygem/bio-executables-1.0.0.gem) = 15360
Added: head/biology/rubygem-bio-executables/pkg-descr
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/rubygem-bio-executables/pkg-descr Fri Jul 24 07:08:00 2020 (r543010)
@@ -0,0 +1,9 @@
+bio-executables is a collection of miscellaneous utilities for bioinformatics
+that were formerly part of the BioRuby core ("bio" gem). Because of reducing
+complexity, they were moved to this gem.
+
+This code has historically been part of the BioRuby gem, but has been split into
+its own gem as part of an effort to modularize BioRuby. bio-executables and many
+more plugins are available at biogems.info.
+
+WWW: https://github.com/bioruby/bioruby-executables
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