svn commit: r496770 - in head/biology: . py-dnaio

[Jason W. Bacon]

Author: jwb
Date: Sun Mar 24 19:40:26 2019
New Revision: 496770
URL: https://svnweb.freebsd.org/changeset/ports/496770

Log:
  biology/py-dnaio: Read and write FASTQ and FASTA
  
  Factored out of py-cutadapt
  
  Reviewed by:    jrm

Added:
  head/biology/py-dnaio/
  head/biology/py-dnaio/Makefile   (contents, props changed)
  head/biology/py-dnaio/distinfo   (contents, props changed)
  head/biology/py-dnaio/pkg-descr   (contents, props changed)
Modified:
  head/biology/Makefile

Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile	Sun Mar 24 18:44:12 2019	(r496769)
+++ head/biology/Makefile	Sun Mar 24 19:40:26 2019	(r496770)
@@ -113,6 +113,7 @@
     SUBDIR += py-biopython
     SUBDIR += py-bx-python
     SUBDIR += py-cutadapt
+    SUBDIR += py-dnaio
     SUBDIR += py-fastTSNE
     SUBDIR += py-gffutils
     SUBDIR += py-gtfparse

Added: head/biology/py-dnaio/Makefile
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/py-dnaio/Makefile	Sun Mar 24 19:40:26 2019	(r496770)
@@ -0,0 +1,18 @@
+# $FreeBSD$
+
+PORTNAME=	dnaio
+DISTVERSION=	0.3
+CATEGORIES=	biology python
+MASTER_SITES=	CHEESESHOP
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	jwb at FreeBSD.org
+COMMENT=	Read and write FASTQ and FASTA
+
+LICENSE=	MIT
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+USES=		python:3.4+
+USE_PYTHON=	autoplist distutils
+
+.include <bsd.port.mk>

Added: head/biology/py-dnaio/distinfo
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/py-dnaio/distinfo	Sun Mar 24 19:40:26 2019	(r496770)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1553347181
+SHA256 (dnaio-0.3.tar.gz) = 47e4449affad0981978fe986684fc0d9c39736f05a157f6cf80e54dae0a92638
+SIZE (dnaio-0.3.tar.gz) = 138098

Added: head/biology/py-dnaio/pkg-descr
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/py-dnaio/pkg-descr	Sun Mar 24 19:40:26 2019	(r496770)
@@ -0,0 +1,5 @@
+dnaio is a Python 3 library for fast parsing of FASTQ and also FASTA files. The
+code was previously part of the cutadapt tool and has been improved since it
+has been split out.
+
+WWW: https://pypi.python.org/pypi/dnaio