svn commit: r494422 - in head: databases/grass7 graphics/gdal graphics/gmt graphics/gmt5 graphics/grads graphics/opendx graphics/qgis math/grace math/gri math/labplot math/moab math/octave-forge-ne...

Sat Mar 2 17:46:06 UTC 2019

Author: sunpoet
Date: Sat Mar  2 17:45:58 2019
New Revision: 494422
URL: https://svnweb.freebsd.org/changeset/ports/494422

Log:
  Update science/netcdf to 4.6.3
  
  - Bump PORTREVISION of dependent ports for shlib change
  
  Changes:	https://github.com/Unidata/netcdf-c/releases
  		https://github.com/Unidata/netcdf-c/blob/master/RELEASE_NOTES.md

Modified:
  head/databases/grass7/Makefile
  head/graphics/gdal/Makefile
  head/graphics/gmt/Makefile
  head/graphics/gmt5/Makefile
  head/graphics/grads/Makefile
  head/graphics/opendx/Makefile
  head/graphics/qgis/Makefile
  head/math/grace/Makefile
  head/math/gri/Makefile
  head/math/labplot/Makefile
  head/math/moab/Makefile
  head/math/octave-forge-netcdf/Makefile
  head/math/p5-NetCDF/Makefile
  head/math/py-scientific/Makefile
  head/science/cdo/Makefile
  head/science/eccodes/Makefile
  head/science/gnudatalanguage/Makefile
  head/science/grib_api/Makefile
  head/science/kst2/Makefile
  head/science/minc2/Makefile
  head/science/netcdf-cxx/Makefile
  head/science/netcdf-fortran/Makefile
  head/science/netcdf/Makefile
  head/science/netcdf/distinfo
  head/science/netcdf/pkg-plist
  head/science/py-ScientificPython/Makefile
  head/science/py-netCDF4/Makefile
  head/science/pycdf/Makefile
  head/science/rubygem-ruby-netcdf/Makefile
  head/science/v_sim/Makefile
  head/science/vmd/Makefile

Modified: head/databases/grass7/Makefile
==============================================================================

--- head/databases/grass7/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/databases/grass7/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,7 +3,7 @@
 
 PORTNAME=	grass
 PORTVERSION=	7.6.0
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	databases geography
 MASTER_SITES=	https://grass.osgeo.org/%SUBDIR%/ \
 		http://grass.cict.fr/%SUBDIR%/ \

Modified: head/graphics/gdal/Makefile
==============================================================================
--- head/graphics/gdal/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/graphics/gdal/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,6 +3,7 @@
 
 PORTNAME=	gdal
 PORTVERSION=	2.4.0
+PORTREVISION=	1
 CATEGORIES=	graphics geography
 MASTER_SITES=	https://download.osgeo.org/gdal/${PORTVERSION}/ \
 		LOCAL/sunpoet

Modified: head/graphics/gmt/Makefile
==============================================================================
--- head/graphics/gmt/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/graphics/gmt/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -4,6 +4,7 @@
 PORTNAME=	gmt
 DISTVERSION=	4.5.18
 DISTVERSIONSUFFIX=	-src
+PORTREVISION=	1
 CATEGORIES=	graphics
 MASTER_SITES=	ftp://ftp.soest.hawaii.edu/%SUBDIR%/ \
 		ftp://ftp.geologi.uio.no/pub/%SUBDIR%/ \

Modified: head/graphics/gmt5/Makefile
==============================================================================
--- head/graphics/gmt5/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/graphics/gmt5/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,6 +3,7 @@
 PORTNAME=	gmt5
 DISTVERSION=	5.4.5
 DISTVERSIONSUFFIX=	-src
+PORTREVISION=	1
 CATEGORIES=	graphics
 MASTER_SITES=	ftp://ftp.soest.hawaii.edu/%SUBDIR%/ \
 		ftp://ftp.geologi.uio.no/pub/%SUBDIR%/ \

Modified: head/graphics/grads/Makefile
==============================================================================
--- head/graphics/grads/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/graphics/grads/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,7 +3,7 @@
 
 PORTNAME=	grads
 PORTVERSION=	1.9b4
-PORTREVISION=	12
+PORTREVISION=	13
 CATEGORIES=	graphics science math
 MASTER_SITES=	ftp://grads.iges.org/grads/1.9/:src \
 		ftp://cola.gmu.edu/grads/1.9/:src \

Modified: head/graphics/opendx/Makefile
==============================================================================
--- head/graphics/opendx/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/graphics/opendx/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,7 +3,7 @@
 
 PORTNAME=	opendx
 PORTVERSION=	4.4.4
-PORTREVISION=	28
+PORTREVISION=	29
 CATEGORIES=	graphics math java
 MASTER_SITES=	http://www.sfr-fresh.com/unix/misc/
 DISTNAME=	dx-${PORTVERSION}

Modified: head/graphics/qgis/Makefile
==============================================================================
--- head/graphics/qgis/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/graphics/qgis/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -4,6 +4,7 @@
 PORTNAME=	qgis
 DISTVERSIONPREFIX=	final-
 DISTVERSION=	3_6_0
+PORTREVISION=	1
 CATEGORIES=	graphics geography
 
 MAINTAINER=	rhurlin at gwdg.de

Modified: head/math/grace/Makefile
==============================================================================
--- head/math/grace/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/math/grace/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,7 +3,7 @@
 
 PORTNAME=	grace
 PORTVERSION=	5.1.25
-PORTREVISION=	4
+PORTREVISION=	5
 CATEGORIES=	math print
 MASTER_SITES=	ftp://ftp.fu-berlin.de/unix/graphics/grace/src/stable/ \
 		ftp://ftp.ntua.gr/pub/graphics/grace/src/stable/ \

Modified: head/math/gri/Makefile
==============================================================================
--- head/math/gri/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/math/gri/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,7 +3,7 @@
 
 PORTNAME=	gri
 PORTVERSION=	2.12.23
-PORTREVISION=	7
+PORTREVISION=	8
 CATEGORIES=	math
 MASTER_SITES=	SF
 

Modified: head/math/labplot/Makefile
==============================================================================
--- head/math/labplot/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/math/labplot/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,7 +3,7 @@
 
 PORTNAME=	labplot
 PORTVERSION=	2.5.0
-PORTREVISION=	3
+PORTREVISION=	4
 CATEGORIES=	math kde
 MASTER_SITES=	KDE/stable/${PORTNAME}/${PORTVERSION}
 

Modified: head/math/moab/Makefile
==============================================================================
--- head/math/moab/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/math/moab/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -2,7 +2,7 @@
 
 PORTNAME=	moab
 DISTVERSION=	5.0.0
-PORTREVISION=	3
+PORTREVISION=	4
 CATEGORIES=	math
 MASTER_SITES=	https://bitbucket.org/${BB_ACCOUNT}/${BB_PROJECT}/get/${BB_COMMIT}.tar.gz?dummy=/
 

Modified: head/math/octave-forge-netcdf/Makefile
==============================================================================
--- head/math/octave-forge-netcdf/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/math/octave-forge-netcdf/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,7 +3,7 @@
 
 PORTNAME=	octave-forge-netcdf
 PORTVERSION=	1.0.12
-PORTREVISION=	5
+PORTREVISION=	6
 CATEGORIES=	math
 
 MAINTAINER=	stephen at FreeBSD.org

Modified: head/math/p5-NetCDF/Makefile
==============================================================================
--- head/math/p5-NetCDF/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/math/p5-NetCDF/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,7 +3,7 @@
 
 PORTNAME=	NetCDF
 PORTVERSION=	1.2.4
-PORTREVISION=	5
+PORTREVISION=	6
 CATEGORIES=	math perl5
 MASTER_SITES=	ftp://ftp.unidata.ucar.edu/pub/netcdf-perl/
 PKGNAMEPREFIX=	p5-

Modified: head/math/py-scientific/Makefile
==============================================================================
--- head/math/py-scientific/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/math/py-scientific/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,7 +3,7 @@
 
 PORTNAME=	scientific
 PORTVERSION=	2.8
-PORTREVISION=	7
+PORTREVISION=	8
 CATEGORIES=	math python
 MASTER_SITES=	http://sourcesup.cru.fr/frs/download.php/2309/
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}

Modified: head/science/cdo/Makefile
==============================================================================
--- head/science/cdo/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/science/cdo/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,6 +3,7 @@
 
 PORTNAME=	cdo
 PORTVERSION=	1.9.6
+PORTREVISION=	1
 CATEGORIES=	science
 MASTER_SITES=	https://code.mpimet.mpg.de/attachments/download/19299/ \
 		LOCAL/sunpoet

Modified: head/science/eccodes/Makefile
==============================================================================
--- head/science/eccodes/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/science/eccodes/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -4,6 +4,7 @@
 PORTNAME=	eccodes
 PORTVERSION=	2.12.0
 DISTVERSIONSUFFIX=	-Source
+PORTREVISION=	1
 CATEGORIES=	science
 MASTER_SITES=	https://confluence.ecmwf.int/download/attachments/45757960/ \
 		LOCAL/sunpoet

Modified: head/science/gnudatalanguage/Makefile
==============================================================================
--- head/science/gnudatalanguage/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/science/gnudatalanguage/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,8 +3,8 @@
 
 PORTNAME=	gnudatalanguage
 PORTVERSION=	0.9.9
-PORTREVISION=	4
 DISTVERSIONPREFIX=	v
+PORTREVISION=	5
 CATEGORIES=	science lang
 .if defined(BUILD_PYTHON_MODULE)
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}

Modified: head/science/grib_api/Makefile
==============================================================================
--- head/science/grib_api/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/science/grib_api/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -4,6 +4,7 @@
 PORTNAME=	grib_api
 PORTVERSION=	1.28.0
 DISTVERSIONSUFFIX=	-Source
+PORTREVISION=	1
 CATEGORIES=	science
 MASTER_SITES=	https://confluence.ecmwf.int/download/attachments/3473437/ \
 		LOCAL/sunpoet

Modified: head/science/kst2/Makefile
==============================================================================
--- head/science/kst2/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/science/kst2/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,7 +3,7 @@
 
 PORTNAME=	kst
 DISTVERSION=	${KST_VERSION}.${KST_DATE}
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	science kde
 
 MAINTAINER=	makc at FreeBSD.org

Modified: head/science/minc2/Makefile
==============================================================================
--- head/science/minc2/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/science/minc2/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -4,7 +4,7 @@
 PORTNAME=	minc
 PORTVERSION=	2.2.00
 DISTVERSIONPREFIX=	release-
-PORTREVISION=	8
+PORTREVISION=	9
 PORTEPOCH=	1
 CATEGORIES=	science biology
 PKGNAMESUFFIX=	2

Modified: head/science/netcdf-cxx/Makefile
==============================================================================
--- head/science/netcdf-cxx/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/science/netcdf-cxx/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,7 +3,7 @@
 
 PORTNAME=	netcdf-cxx
 PORTVERSION=	4.3.0
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	science
 MASTER_SITES=	https://www.unidata.ucar.edu/downloads/netcdf/ftp/ \
 		ftp://ftp.unidata.ucar.edu/pub/netcdf/ \

Modified: head/science/netcdf-fortran/Makefile
==============================================================================
--- head/science/netcdf-fortran/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/science/netcdf-fortran/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -4,6 +4,7 @@
 PORTNAME=	netcdf-fortran
 PORTVERSION=	4.4.5
 DISTVERSIONPREFIX=	v
+PORTREVISION=	1
 CATEGORIES=	science
 
 MAINTAINER=	sunpoet at FreeBSD.org

Modified: head/science/netcdf/Makefile
==============================================================================
--- head/science/netcdf/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/science/netcdf/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -2,7 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	netcdf
-PORTVERSION=	4.6.2
+PORTVERSION=	4.6.3
 DISTVERSIONPREFIX=	c-
 CATEGORIES=	science
 MASTER_SITES=	https://www.unidata.ucar.edu/downloads/netcdf/ftp/ \
@@ -46,6 +46,7 @@ SZIP_LIBS=		-lsz
 
 post-patch:
 	@${REINPLACE_CMD} -e 's|-ldl ||g' ${WRKSRC}/configure
+	@${REINPLACE_CMD} -e '/ int fileno(FILE\*);/d' ${WRKSRC}/libdispatch/d*.c ${WRKSRC}/ncgen/ncgen* ${WRKSRC}/ncgen3/ncgen* ${WRKSRC}/oc2/ocdump.c
 
 post-build-DOXYGEN-on:
 	cd ${WRKSRC}/docs/ && ${LOCALBASE}/bin/doxygen .

Modified: head/science/netcdf/distinfo
==============================================================================
--- head/science/netcdf/distinfo	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/science/netcdf/distinfo	Sat Mar  2 17:45:58 2019	(r494422)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1547388092
-SHA256 (netcdf-c-4.6.2.tar.gz) = c37525981167b3cd82d32e1afa3022afb94e59287db5f116c57f5ed4d9c6a638
-SIZE (netcdf-c-4.6.2.tar.gz) = 5794393
+TIMESTAMP = 1551529750
+SHA256 (netcdf-c-4.6.3.tar.gz) = 335fdf16d7531f430ad75e732ed1a9a3fc83ad3ef91fb33a70119a555dd5415c
+SIZE (netcdf-c-4.6.3.tar.gz) = 5961248

Modified: head/science/netcdf/pkg-plist
==============================================================================
--- head/science/netcdf/pkg-plist	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/science/netcdf/pkg-plist	Sat Mar  2 17:45:58 2019	(r494422)
@@ -5,13 +5,14 @@ bin/ncgen
 bin/ncgen3
 include/netcdf.h
 include/netcdf_aux.h
+include/netcdf_filter.h
 include/netcdf_mem.h
 include/netcdf_meta.h
 lib/libnetcdf.a
 lib/libnetcdf.settings
 lib/libnetcdf.so
-lib/libnetcdf.so.13
-lib/libnetcdf.so.13.1.1
+lib/libnetcdf.so.15
+lib/libnetcdf.so.15.0.0
 libdata/pkgconfig/netcdf.pc
 man/man1/nccopy.1.gz
 man/man1/ncdump.1.gz

Modified: head/science/py-ScientificPython/Makefile
==============================================================================
--- head/science/py-ScientificPython/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/science/py-ScientificPython/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -2,7 +2,7 @@
 
 PORTNAME=	ScientificPython
 DISTVERSION=	2.9.4
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	science python
 MASTER_SITES=	CHEESESHOP
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}

Modified: head/science/py-netCDF4/Makefile
==============================================================================
--- head/science/py-netCDF4/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/science/py-netCDF4/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,9 +3,9 @@
 
 PORTNAME=	netCDF4
 PORTVERSION=	1.3.1
-PORTREVISION=	4
 DISTVERSIONPREFIX=	v
 DISTVERSIONSUFFIX=	rel
+PORTREVISION=	5
 CATEGORIES=	science python
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 

Modified: head/science/pycdf/Makefile
==============================================================================
--- head/science/pycdf/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/science/pycdf/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,7 +3,7 @@
 
 PORTNAME=	pycdf
 PORTVERSION=	0.6.3
-PORTREVISION=	8
+PORTREVISION=	9
 CATEGORIES=	science python
 MASTER_SITES=	SF/pysclint/${PORTNAME}/${PORTNAME}-${PORTVERSION}b
 DISTNAME=	${PORTNAME}-0.6-3b

Modified: head/science/rubygem-ruby-netcdf/Makefile
==============================================================================
--- head/science/rubygem-ruby-netcdf/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/science/rubygem-ruby-netcdf/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,7 +3,7 @@
 
 PORTNAME=	ruby-netcdf
 PORTVERSION=	0.7.2
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	science rubygems
 MASTER_SITES=	RG
 

Modified: head/science/v_sim/Makefile
==============================================================================
--- head/science/v_sim/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/science/v_sim/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,7 +3,7 @@
 
 PORTNAME=	v_sim
 PORTVERSION=	3.7.2
-PORTREVISION=	9
+PORTREVISION=	10
 CATEGORIES=	science
 MASTER_SITES=	http://inac.cea.fr/L_Sim/V_Sim/download/
 

Modified: head/science/vmd/Makefile
==============================================================================
--- head/science/vmd/Makefile	Sat Mar  2 17:44:46 2019	(r494421)
+++ head/science/vmd/Makefile	Sat Mar  2 17:45:58 2019	(r494422)
@@ -3,7 +3,7 @@
 
 PORTNAME=	vmd
 DISTVERSION=	1.9.3
-PORTREVISION=	6
+PORTREVISION=	7
 CATEGORIES=	science graphics python tcl tk
 MASTER_SITES=	http://jedi.ks.uiuc.edu/~johns/raytracer/files/0.99b6/:tachyon \
 		http://www.photonlimited.com/~johns/tachyon/files/0.99b6/:tachyon \
