svn commit: r485989 - in head/misc: . snakemake

[Yuri Victorovich]

Author: yuri
Date: Tue Nov 27 08:05:36 2018
New Revision: 485989
URL: https://svnweb.freebsd.org/changeset/ports/485989

Log:
  New port: snakemake/Makefile: Workflow management system

Added:
  head/misc/snakemake/
  head/misc/snakemake/Makefile   (contents, props changed)
  head/misc/snakemake/distinfo   (contents, props changed)
  head/misc/snakemake/pkg-descr   (contents, props changed)
Modified:
  head/misc/Makefile

Modified: head/misc/Makefile
==============================================================================
--- head/misc/Makefile	Tue Nov 27 07:53:33 2018	(r485988)
+++ head/misc/Makefile	Tue Nov 27 08:05:36 2018	(r485989)
@@ -507,6 +507,7 @@
     SUBDIR += sloccount
     SUBDIR += sls
     SUBDIR += smssend
+    SUBDIR += snakemake
     SUBDIR += soapysdr
     SUBDIR += solarized
     SUBDIR += spamcalc

Added: head/misc/snakemake/Makefile
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/misc/snakemake/Makefile	Tue Nov 27 08:05:36 2018	(r485989)
@@ -0,0 +1,29 @@
+# $FreeBSD$
+
+PORTNAME=	snakemake
+DISTVERSION=	5.3.0
+CATEGORIES=	misc
+MASTER_SITES=	CHEESESHOP
+
+MAINTAINER=	yuri at FreeBSD.org
+COMMENT=	Workflow management system
+
+LICENSE=	MIT
+
+RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}appdirs>0:devel/py-appdirs@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}configargparse>0:devel/py-configargparse@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}datrie>0:devel/py-datrie@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}docutils>0:textproc/py-docutils@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}GitPython>0:devel/py-gitpython@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}jsonschema>0:devel/py-jsonschema@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}ratelimiter>0:devel/py-ratelimiter@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}wrapt>0:devel/py-wrapt@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}yaml>0:devel/py-yaml@${PY_FLAVOR}
+
+USES=		python:3.5+
+USE_PYTHON=	distutils autoplist
+
+NO_ARCH=	yes
+
+.include <bsd.port.mk>

Added: head/misc/snakemake/distinfo
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/misc/snakemake/distinfo	Tue Nov 27 08:05:36 2018	(r485989)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1543303780
+SHA256 (snakemake-5.3.0.tar.gz) = 612a16f2bba580c47183e4f752ed40b034852541ca3e96e480d01fb30ad9570c
+SIZE (snakemake-5.3.0.tar.gz) = 168283

Added: head/misc/snakemake/pkg-descr
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/misc/snakemake/pkg-descr	Tue Nov 27 08:05:36 2018	(r485989)
@@ -0,0 +1,7 @@
+Snakemake is a workflow management system that aims to reduce the complexity of
+creating workflows by providing a fast and comfortable execution environment,
+together with a clean and modern specification language in python style.
+Snakemake workflows are essentially Python scripts extended by declarative code
+to define rules. Rules describe how to create output files from input files.
+
+WWW: https://bitbucket.org/snakemake/snakemake/src/master/