svn commit: r484165 - in head/math: . moab moab/files
Yuri Victorovich
yuri at FreeBSD.org
Mon Nov 5 02:13:16 UTC 2018
Author: yuri
Date: Mon Nov 5 02:13:10 2018
New Revision: 484165
URL: https://svnweb.freebsd.org/changeset/ports/484165
Log:
New port: math/moab: Component for representing and evaluating mesh data
Added:
head/math/moab/
head/math/moab/Makefile (contents, props changed)
head/math/moab/distinfo (contents, props changed)
head/math/moab/files/
head/math/moab/files/patch-configure.ac (contents, props changed)
head/math/moab/files/patch-src_io_NCHelper.cpp (contents, props changed)
head/math/moab/files/patch-src_io_ReadABAQUS.cpp (contents, props changed)
head/math/moab/files/patch-src_io_WriteNCDF.cpp (contents, props changed)
head/math/moab/pkg-descr (contents, props changed)
head/math/moab/pkg-plist (contents, props changed)
Modified:
head/math/Makefile
Modified: head/math/Makefile
==============================================================================
--- head/math/Makefile Mon Nov 5 02:07:09 2018 (r484164)
+++ head/math/Makefile Mon Nov 5 02:13:10 2018 (r484165)
@@ -353,6 +353,7 @@
SUBDIR += miracl
SUBDIR += mkl-dnn
SUBDIR += mlpack
+ SUBDIR += moab
SUBDIR += moo
SUBDIR += mosesdecoder
SUBDIR += mpc
Added: head/math/moab/Makefile
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/math/moab/Makefile Mon Nov 5 02:13:10 2018 (r484165)
@@ -0,0 +1,26 @@
+# $FreeBSD$
+
+PORTNAME= moab
+DISTVERSION= 4.6.3
+CATEGORIES= math
+MASTER_SITES= http://ftp.mcs.anl.gov/pub/fathom/
+
+MAINTAINER= yuri at FreeBSD.org
+COMMENT= Component for representing and evaluating mesh data
+
+LICENSE= BSD2CLAUSE
+xLICENSE_FILE= ${WRKSRC}/LICENSE.txt
+
+LIB_DEPENDS= libhdf5.so:science/hdf5 \
+ libnetcdf.so:science/netcdf
+
+USES= autoreconf gmake libtool localbase:ldflags
+GNU_CONFIGURE= yes
+CONFIGURE_ARGS= --disable-static --with-netcdf=${LOCALBASE}
+USE_LDCONFIG= yes
+
+OPTIONS_DEFINE= DOCS
+
+PORTDOCS= *
+
+.include <bsd.port.mk>
Added: head/math/moab/distinfo
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/math/moab/distinfo Mon Nov 5 02:13:10 2018 (r484165)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1541374760
+SHA256 (moab-4.6.3.tar.gz) = a25933254a05013811d3769e5d96b01cc7b5d67026acacbaae4f3568ce18fd7f
+SIZE (moab-4.6.3.tar.gz) = 21861257
Added: head/math/moab/files/patch-configure.ac
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/math/moab/files/patch-configure.ac Mon Nov 5 02:13:10 2018 (r484165)
@@ -0,0 +1,12 @@
+--- configure.ac.orig 2018-11-05 00:30:52 UTC
++++ configure.ac
+@@ -31,7 +31,8 @@ LIBS="$LIBS -lm"
+
+ AC_PROG_LN_S
+ AC_PROG_MAKE_SET
+-AC_DISABLE_SHARED
++AC_ENABLE_SHARED
++AC_DISABLE_STATIC
+ AC_PROG_LIBTOOL
+ FATHOM_COMPILER_FLAGS
+ m4_ifdef([AM_SILENT_RULES],[
Added: head/math/moab/files/patch-src_io_NCHelper.cpp
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/math/moab/files/patch-src_io_NCHelper.cpp Mon Nov 5 02:13:10 2018 (r484165)
@@ -0,0 +1,11 @@
+--- src/io/NCHelper.cpp.orig 2018-11-05 01:48:41 UTC
++++ src/io/NCHelper.cpp
+@@ -714,7 +714,7 @@ ErrorCode NCHelper::get_tag_to_set(ReadN
+ rval = mbImpl->tag_get_handle(tag_name.str().c_str(), 0, MB_TYPE_INTEGER, tagh, MB_TAG_CREAT | MB_TAG_SPARSE | MB_TAG_VARLEN);
+ break;
+ default:
+- std::cerr << "Unrecognized data type for tag " << tag_name << std::endl;
++ std::cerr << "Unrecognized data type for tag " << tag_name.str() << std::endl;
+ rval = MB_FAILURE;
+ }
+
Added: head/math/moab/files/patch-src_io_ReadABAQUS.cpp
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/math/moab/files/patch-src_io_ReadABAQUS.cpp Mon Nov 5 02:13:10 2018 (r484165)
@@ -0,0 +1,11 @@
+--- src/io/ReadABAQUS.cpp.orig 2018-11-04 23:41:08 UTC
++++ src/io/ReadABAQUS.cpp
+@@ -105,7 +105,7 @@ void ReadABAQUS::reset()
+ ReadABAQUS::~ReadABAQUS()
+ {
+ mdbImpl->release_interface(readMeshIface);
+- if (NULL != abFile)
++ if (abFile.is_open())
+ abFile.close();
+ }
+
Added: head/math/moab/files/patch-src_io_WriteNCDF.cpp
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/math/moab/files/patch-src_io_WriteNCDF.cpp Mon Nov 5 02:13:10 2018 (r484165)
@@ -0,0 +1,13 @@
+--- src/io/WriteNCDF.cpp.orig 2018-11-05 01:47:40 UTC
++++ src/io/WriteNCDF.cpp
+@@ -154,8 +154,8 @@ void WriteNCDF::time_and_date(char* time
+ strftime(date_string, TIME_STR_LEN, "%m/%d/%Y", local_time);
+
+ // terminate with NULL character
+- time_string[10] = (char)NULL;
+- date_string[10] = (char)NULL;
++ time_string[10] = (char)0;
++ date_string[10] = (char)0;
+ }
+
+ ErrorCode WriteNCDF::write_file(const char *exodus_file_name,
Added: head/math/moab/pkg-descr
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/math/moab/pkg-descr Mon Nov 5 02:13:10 2018 (r484165)
@@ -0,0 +1,15 @@
+The Mesh-Oriented datABase (MOAB) is a component for representing and evaluating
+mesh data. MOAB can store structured and unstructured mesh, consisting of
+elements in the finite element zoo plus polygons and polyhedra. The functional
+interface to MOAB is simple yet powerful, allowing the representation of many
+types of metadata commonly found on the mesh. MOAB is optimized for efficiency
+in space and time, based on access to mesh in chunks rather than through
+individual entities, while also versatile enough to support individual entity
+access. The MOAB library can naturally represent finite element and other types
+of mesh data. Various types of meta-data are often used in conjunction with
+a mesh. Examples include boundary condition groupings, material types, and
+provenance information for the mesh. Because the data model used in MOAB is so
+abstract, conventions are useful for describing how meta-data is stored into
+that data model.
+
+WWW: http://sigma.mcs.anl.gov/moab-library/
Added: head/math/moab/pkg-plist
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/math/moab/pkg-plist Mon Nov 5 02:13:10 2018 (r484165)
@@ -0,0 +1,134 @@
+bin/dagmc_preproc
+bin/h5minfo
+bin/h5mvalidate
+bin/hexmodops
+bin/mbconvert
+bin/mbdepth
+bin/mbgsets
+bin/mbmem
+bin/mbsize
+bin/mbskin
+bin/mbsurfplot
+bin/mbtagprop
+bin/spheredecomp
+include/DagMC.hpp
+include/MBAdaptiveKDTree.hpp
+include/MBBSPTree.hpp
+include/MBBSPTreePoly.hpp
+include/MBCN.h
+include/MBCN.hpp
+include/MBCN_protos.h
+include/MBCartVect.hpp
+include/MBCore.hpp
+include/MBEntityHandle.h
+include/MBEntityType.h
+include/MBForward.hpp
+include/MBGeomUtil.hpp
+include/MBInterface.hpp
+include/MBOrientedBoxTreeTool.hpp
+include/MBParallelComm.hpp
+include/MBParallelData.hpp
+include/MBProcConfig.hpp
+include/MBRange.hpp
+include/MBReadUtilIface.hpp
+include/MBReaderIface.hpp
+include/MBReaderWriterSet.hpp
+include/MBSkinner.hpp
+include/MBTagConventions.hpp
+include/MBTypes.h
+include/MBUnknownInterface.hpp
+include/MBUtil.hpp
+include/MBVersion.h
+include/MBWriteUtilIface.hpp
+include/MBWriterIface.hpp
+include/MBiMesh.hpp
+include/MBmpi.h
+include/MOAB_FCDefs.h
+include/iBase.h
+include/iBase_f.h
+include/iMesh.h
+include/iMesh_extensions.h
+include/iMesh_extensions_protos.h
+include/iMesh_f.h
+include/iMesh_protos.h
+include/moab/AdaptiveKDTree.hpp
+include/moab/BSPTree.hpp
+include/moab/BSPTreePoly.hpp
+include/moab/BVHTree.hpp
+include/moab/BoundBox.hpp
+include/moab/CN.hpp
+include/moab/CartVect.hpp
+include/moab/Compiler.hpp
+include/moab/Core.hpp
+include/moab/CpuTimer.hpp
+include/moab/DualTool.hpp
+include/moab/ElemEvaluator.hpp
+include/moab/EntityHandle.hpp
+include/moab/EntityType.hpp
+include/moab/Error.hpp
+include/moab/ExoIIInterface.hpp
+include/moab/FBEngine.hpp
+include/moab/FileOptions.hpp
+include/moab/FindPtFuncs.h
+include/moab/Forward.hpp
+include/moab/GeomTopoTool.hpp
+include/moab/GeomUtil.hpp
+include/moab/HigherOrderFactory.hpp
+include/moab/HomXform.hpp
+include/moab/Interface.hpp
+include/moab/LinearHex.hpp
+include/moab/LinearQuad.hpp
+include/moab/LinearTet.hpp
+include/moab/LinearTri.hpp
+include/moab/LloydSmoother.hpp
+include/moab/Matrix3.hpp
+include/moab/MergeMesh.hpp
+include/moab/MeshTopoUtil.hpp
+include/moab/OrientedBoxTreeTool.hpp
+include/moab/ProgOptions.hpp
+include/moab/QuadraticHex.hpp
+include/moab/Range.hpp
+include/moab/RangeMap.hpp
+include/moab/ReadUtilIface.hpp
+include/moab/ReaderIface.hpp
+include/moab/ReaderWriterSet.hpp
+include/moab/ReorderTool.hpp
+include/moab/ScdInterface.hpp
+include/moab/SetIterator.hpp
+include/moab/Skinner.hpp
+include/moab/SpatialLocator.hpp
+include/moab/SpatialLocatorTimes.hpp
+include/moab/SpectralMeshTool.hpp
+include/moab/Tree.hpp
+include/moab/TreeStats.hpp
+include/moab/TupleList.hpp
+include/moab/Types.hpp
+include/moab/UnknownInterface.hpp
+include/moab/Util.hpp
+include/moab/Version.h
+include/moab/WriteUtilIface.hpp
+include/moab/WriterIface.hpp
+include/moab/point_locater/element_maps/linear_hex_map.hpp
+include/moab/point_locater/element_maps/linear_tet_map.hpp
+include/moab/point_locater/element_maps/quadratic_hex_map.hpp
+include/moab/point_locater/element_maps/spectral_hex_map.hpp
+include/moab/point_locater/io.hpp
+include/moab/point_locater/parametrizer.hpp
+include/moab/point_locater/point_locater.hpp
+include/moab/point_locater/tree/bvh_tree.hpp
+include/moab/point_locater/tree/common_tree.hpp
+include/moab/point_locater/tree/element_tree.hpp
+lib/MOABConfig.cmake
+lib/iMesh-Defs.inc
+lib/libMOAB.so
+lib/libMOAB.so.0
+lib/libMOAB.so.0.0.0
+lib/libdagmc.so
+lib/libdagmc.so.0
+lib/libdagmc.so.0.0.0
+lib/libiMesh.so
+lib/libiMesh.so.0
+lib/libiMesh.so.0.0.0
+lib/moab.config
+lib/moab.make
+man/man1/mbconvert.1.gz
More information about the svn-ports-all
mailing list