svn commit: r472358 - in head/biology: . py-orange3-bioinformatics

[Yuri Victorovich]

Author: yuri
Date: Thu Jun 14 06:25:21 2018
New Revision: 472358
URL: https://svnweb.freebsd.org/changeset/ports/472358

Log:
  New port: biology/py-orange3-bioinformatics: Orange add-on providing common functionality for bioinformatics

Added:
  head/biology/py-orange3-bioinformatics/
  head/biology/py-orange3-bioinformatics/Makefile   (contents, props changed)
  head/biology/py-orange3-bioinformatics/distinfo   (contents, props changed)
  head/biology/py-orange3-bioinformatics/pkg-descr   (contents, props changed)
Modified:
  head/biology/Makefile

Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile	Thu Jun 14 06:12:35 2018	(r472357)
+++ head/biology/Makefile	Thu Jun 14 06:25:21 2018	(r472358)
@@ -102,6 +102,7 @@
     SUBDIR += py-bx-python
     SUBDIR += py-cutadapt
     SUBDIR += py-macs2
+    SUBDIR += py-orange3-bioinformatics
     SUBDIR += py-pysam
     SUBDIR += pycogent
     SUBDIR += pyfasta

Added: head/biology/py-orange3-bioinformatics/Makefile
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/py-orange3-bioinformatics/Makefile	Thu Jun 14 06:25:21 2018	(r472358)
@@ -0,0 +1,26 @@
+# $FreeBSD$
+
+PORTNAME=	orange3-bioinformatics
+DISTVERSION=	3.1.0
+CATEGORIES=	biology python
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	yuri at FreeBSD.org
+COMMENT=	Orange add-on providing common functionality for bioinformatics
+
+LICENSE=	GPLv3
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+RUN_DEPENDS=	orange3>0:misc/orange3 \
+		${PYTHON_PKGNAMEPREFIX}Genesis-PyAPI>0:biology/py-Genesis-PyAPI@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}requests-cache>0:www/py-requests-cache@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}serverfiles>0:misc/py-serverfiles@${PY_FLAVOR}
+
+USES=		python:3.4+
+USE_GITHUB=	yes
+GH_ACCOUNT=	biolab
+USE_PYTHON=	distutils autoplist
+NO_ARCH=	yes
+
+.include <bsd.port.mk>

Added: head/biology/py-orange3-bioinformatics/distinfo
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/py-orange3-bioinformatics/distinfo	Thu Jun 14 06:25:21 2018	(r472358)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1528854565
+SHA256 (biolab-orange3-bioinformatics-3.1.0_GH0.tar.gz) = fee8c31b1099fe076c4401951f0813a1e56bbeeae8c9a5c15e78c11cfbf29e4b
+SIZE (biolab-orange3-bioinformatics-3.1.0_GH0.tar.gz) = 1969698

Added: head/biology/py-orange3-bioinformatics/pkg-descr
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/py-orange3-bioinformatics/pkg-descr	Thu Jun 14 06:25:21 2018	(r472358)
@@ -0,0 +1,11 @@
+Orange Bioinformatics extends Orange, a data mining software package, with
+common functionality for bioinformatics. The provided functionality can be
+accessed as a Python library or through a visual programming interface (Orange
+Canvas). The latter is also suitable for non-programmers.
+
+Orange Bioinformatics provides access to publicly available data, like GEO data
+sets, GO and KEGG. All features can be combined with powerful visualization,
+network exploration and data mining techniques from the Orange data mining
+framework.
+
+WWW: https://github.com/biolab/orange3-bioinformatics