svn commit: r474752 - head/biology/htslib
Yuri Victorovich
yuri at FreeBSD.org
Mon Jul 16 18:11:46 UTC 2018
Author: yuri
Date: Mon Jul 16 18:11:44 2018
New Revision: 474752
URL: https://svnweb.freebsd.org/changeset/ports/474752
Log:
biology/htslib: Update 1.6 -> 1.8
Port changes:
* Use DISTVERSION
* Add USES=localbase instead of CPPFLAGS/LDFLAGS
* Move USES=ssl to CURL_USES=ssl
* Update WWW
PR: 228908
Approved by: maintainer's timeout (cartwright at asu.edu; 35 days)
Modified:
head/biology/htslib/Makefile
head/biology/htslib/distinfo
head/biology/htslib/pkg-descr
head/biology/htslib/pkg-plist
Modified: head/biology/htslib/Makefile
==============================================================================
--- head/biology/htslib/Makefile Mon Jul 16 17:07:19 2018 (r474751)
+++ head/biology/htslib/Makefile Mon Jul 16 18:11:44 2018 (r474752)
@@ -2,7 +2,7 @@
# $FreeBSD$
PORTNAME= htslib
-PORTVERSION= 1.6
+DISTVERSION= 1.8
CATEGORIES= biology devel
MAINTAINER= cartwright at asu.edu
@@ -14,10 +14,9 @@ LICENSE_FILE= ${WRKSRC}/LICENSE
TEST_DEPENDS= bash:shells/bash
+USES= autoreconf gmake localbase pathfix perl5 shebangfix
USE_GITHUB= yes
GH_ACCOUNT= samtools
-
-USES= autoreconf gmake pathfix perl5 shebangfix
USE_PERL5= test
USE_LDCONFIG= yes
GNU_CONFIGURE= yes
@@ -28,11 +27,9 @@ OPTIONS_DEFINE= CURL
OPTIONS_DEFAULT= CURL
CURL_DESC= Use libcurl for network file access (HTTPS and S3 support).
+CURL_USES= ssl
CURL_LIB_DEPENDS= libcurl.so:ftp/curl
CURL_CONFIGURE_ENABLE= libcurl
-
-CPPFLAGS+= -I${LOCALBASE}/include
-LDFLAGS+= -L${LOCALBASE}/lib
PLIST_SUB= PORTVERSION="${PORTVERSION}"
Modified: head/biology/htslib/distinfo
==============================================================================
--- head/biology/htslib/distinfo Mon Jul 16 17:07:19 2018 (r474751)
+++ head/biology/htslib/distinfo Mon Jul 16 18:11:44 2018 (r474752)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1508301522
-SHA256 (samtools-htslib-1.6_GH0.tar.gz) = 4215c9153c27603cbaaf542f2ec128c5e839380d6df6edd4dbf67955170740c6
-SIZE (samtools-htslib-1.6_GH0.tar.gz) = 1155672
+TIMESTAMP = 1528766078
+SHA256 (samtools-htslib-1.8_GH0.tar.gz) = ad52105c0f9ce6474c8f5d2f208b8e71982436ee1ca5225162932b08aff48b23
+SIZE (samtools-htslib-1.8_GH0.tar.gz) = 1262465
Modified: head/biology/htslib/pkg-descr
==============================================================================
--- head/biology/htslib/pkg-descr Mon Jul 16 17:07:19 2018 (r474751)
+++ head/biology/htslib/pkg-descr Mon Jul 16 18:11:44 2018 (r474752)
@@ -2,4 +2,4 @@ HTSlib is an implementation of a unified C library for
formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
data. It is the core library used by samtools and bcftools.
-WWW: http://www.htslib.org/
+WWW: https://www.htslib.org/
Modified: head/biology/htslib/pkg-plist
==============================================================================
--- head/biology/htslib/pkg-plist Mon Jul 16 17:07:19 2018 (r474751)
+++ head/biology/htslib/pkg-plist Mon Jul 16 18:11:44 2018 (r474752)
@@ -32,6 +32,7 @@ lib/libhts.so
lib/libhts.so.%%PORTVERSION%%
lib/libhts.so.2
libdata/pkgconfig/htslib.pc
+man/man1/bgzip.1.gz
man/man1/htsfile.1.gz
man/man1/tabix.1.gz
man/man5/faidx.5.gz
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