svn commit: r486812 - in head/biology: . groopm
Yuri Victorovich
yuri at FreeBSD.org
Fri Dec 7 00:10:07 UTC 2018
Author: yuri
Date: Fri Dec 7 00:10:05 2018
New Revision: 486812
URL: https://svnweb.freebsd.org/changeset/ports/486812
Log:
New port: math/groopm: Metagenomic binning suite
Added:
head/biology/groopm/
head/biology/groopm/Makefile (contents, props changed)
head/biology/groopm/distinfo (contents, props changed)
head/biology/groopm/pkg-descr (contents, props changed)
Modified:
head/biology/Makefile
Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile Fri Dec 7 00:04:10 2018 (r486811)
+++ head/biology/Makefile Fri Dec 7 00:10:05 2018 (r486812)
@@ -42,6 +42,7 @@
SUBDIR += gmap
SUBDIR += gperiodic
SUBDIR += grappa
+ SUBDIR += groopm
SUBDIR += hmmer
SUBDIR += htslib
SUBDIR += hyphy
Added: head/biology/groopm/Makefile
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/groopm/Makefile Fri Dec 7 00:10:05 2018 (r486812)
@@ -0,0 +1,24 @@
+# $FreeBSD$
+
+PORTNAME= GroopM
+DISTVERSION= 0.3.4
+CATEGORIES= biology python
+MASTER_SITES= CHEESESHOP
+
+MAINTAINER= yuri at FreeBSD.org
+COMMENT= Metagenomic binning suite
+
+LICENSE= GPLv3
+LICENSE_FILE= ${WRKSRC}/LICENSE.txt
+
+RUN_DEPENDS= ${PYNUMPY} \
+ ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.1.0:math/py-matplotlib@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}scipy>=0.10.1:science/py-scipy@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}tables>=2.3:devel/py-tables@${PY_FLAVOR}
+
+USES= python
+USE_PYTHON= distutils noflavors autoplist
+
+NO_ARCH= yes
+
+.include <bsd.port.mk>
Added: head/biology/groopm/distinfo
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/groopm/distinfo Fri Dec 7 00:10:05 2018 (r486812)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1544140602
+SHA256 (GroopM-0.3.4.tar.gz) = 48bdaeb9010e7d81785697a55edc394ef36c2646b310d625a24bec740f1b6080
+SIZE (GroopM-0.3.4.tar.gz) = 127707
Added: head/biology/groopm/pkg-descr
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/groopm/pkg-descr Fri Dec 7 00:10:05 2018 (r486812)
@@ -0,0 +1,7 @@
+GroopM is a metagenomic binning toolset. It leverages spatio-temoral
+dynamics (differential coverage) to accurately (and almost automatically)
+extract population genomes from multi-sample metagenomic datasets.
+
+GroopM is largely parameter-free. Use: groopm -h for more info.
+
+WWW: http://ecogenomics.github.io/GroopM/
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