svn commit: r449746 - head/biology/p5-BioPerl

[Wen Heping]

Author: wen
Date: Wed Sep 13 01:45:35 2017
New Revision: 449746
URL: https://svnweb.freebsd.org/changeset/ports/449746

Log:
  - Update to 1.007002
  Changes: http://search.cpan.org/src/CJFIELDS/BioPerl-1.007002/Changes

Modified:
  head/biology/p5-BioPerl/Makefile
  head/biology/p5-BioPerl/distinfo
  head/biology/p5-BioPerl/pkg-plist

Modified: head/biology/p5-BioPerl/Makefile
==============================================================================
--- head/biology/p5-BioPerl/Makefile	Wed Sep 13 01:24:41 2017	(r449745)
+++ head/biology/p5-BioPerl/Makefile	Wed Sep 13 01:45:35 2017	(r449746)
@@ -2,8 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	BioPerl
-PORTVERSION=	1.007001
-PORTREVISION=	2
+PORTVERSION=	1.007002
 CATEGORIES=	biology perl5
 MASTER_SITES=	CPAN
 MASTER_SITE_SUBDIR=	CPAN:CJFIELDS

Modified: head/biology/p5-BioPerl/distinfo
==============================================================================
--- head/biology/p5-BioPerl/distinfo	Wed Sep 13 01:24:41 2017	(r449745)
+++ head/biology/p5-BioPerl/distinfo	Wed Sep 13 01:45:35 2017	(r449746)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1479828383
-SHA256 (BioPerl-1.007001.tar.gz) = 9da1dbcd10452f53194c98c6cc2f604a59124507dcc1e6a8440565f44dd07b40
-SIZE (BioPerl-1.007001.tar.gz) = 12486953
+TIMESTAMP = 1505232617
+SHA256 (BioPerl-1.007002.tar.gz) = 17aa3aaab2f381bbcaffdc370002eaf28f2c341b538068d6586b2276a76464a1
+SIZE (BioPerl-1.007002.tar.gz) = 12362741

Modified: head/biology/p5-BioPerl/pkg-plist
==============================================================================
--- head/biology/p5-BioPerl/pkg-plist	Wed Sep 13 01:24:41 2017	(r449745)
+++ head/biology/p5-BioPerl/pkg-plist	Wed Sep 13 01:45:35 2017	(r449746)
@@ -36,7 +36,6 @@ bin/bp_netinstall.pl
 bin/bp_nexus2nh.pl
 bin/bp_nrdb.pl
 bin/bp_oligo_count.pl
-bin/bp_pairwise_kaks.pl
 bin/bp_parse_hmmsearch.pl
 bin/bp_process_gadfly.pl
 bin/bp_process_sgd.pl
@@ -769,10 +768,6 @@ bin/bp_unflatten_seq.pl
 %%SITE_PERL%%/Bio/Tools/Phylo/Gumby.pm
 %%SITE_PERL%%/Bio/Tools/Phylo/Molphy.pm
 %%SITE_PERL%%/Bio/Tools/Phylo/Molphy/Result.pm
-%%SITE_PERL%%/Bio/Tools/Phylo/PAML.pm
-%%SITE_PERL%%/Bio/Tools/Phylo/PAML/Codeml.pm
-%%SITE_PERL%%/Bio/Tools/Phylo/PAML/ModelResult.pm
-%%SITE_PERL%%/Bio/Tools/Phylo/PAML/Result.pm
 %%SITE_PERL%%/Bio/Tools/Phylo/Phylip/ProtDist.pm
 %%SITE_PERL%%/Bio/Tools/Prediction/Exon.pm
 %%SITE_PERL%%/Bio/Tools/Prediction/Gene.pm
@@ -893,7 +888,6 @@ bin/bp_unflatten_seq.pl
 %%PERL5_MAN1%%/bp_nexus2nh.pl.1.gz
 %%PERL5_MAN1%%/bp_nrdb.pl.1.gz
 %%PERL5_MAN1%%/bp_oligo_count.pl.1.gz
-%%PERL5_MAN1%%/bp_pairwise_kaks.pl.1.gz
 %%PERL5_MAN1%%/bp_parse_hmmsearch.pl.1.gz
 %%PERL5_MAN1%%/bp_process_gadfly.pl.1.gz
 %%PERL5_MAN1%%/bp_process_sgd.pl.1.gz
@@ -1623,10 +1617,6 @@ bin/bp_unflatten_seq.pl
 %%PERL5_MAN3%%/Bio::Tools::Phylo::Gumby.3.gz
 %%PERL5_MAN3%%/Bio::Tools::Phylo::Molphy.3.gz
 %%PERL5_MAN3%%/Bio::Tools::Phylo::Molphy::Result.3.gz
-%%PERL5_MAN3%%/Bio::Tools::Phylo::PAML.3.gz
-%%PERL5_MAN3%%/Bio::Tools::Phylo::PAML::Codeml.3.gz
-%%PERL5_MAN3%%/Bio::Tools::Phylo::PAML::ModelResult.3.gz
-%%PERL5_MAN3%%/Bio::Tools::Phylo::PAML::Result.3.gz
 %%PERL5_MAN3%%/Bio::Tools::Phylo::Phylip::ProtDist.3.gz
 %%PERL5_MAN3%%/Bio::Tools::Prediction::Exon.3.gz
 %%PERL5_MAN3%%/Bio::Tools::Prediction::Gene.3.gz