svn commit: r451982 - in head/biology: ariadne biococoa crux plink ssaha tRNAscan-SE

[Baptiste Daroussin]

Author: bapt
Date: Fri Oct 13 11:14:53 2017
New Revision: 451982
URL: https://svnweb.freebsd.org/changeset/ports/451982

Log:
  Mark as broken ports with no public distfiles

Modified:
  head/biology/ariadne/Makefile
  head/biology/biococoa/Makefile
  head/biology/crux/Makefile
  head/biology/plink/Makefile
  head/biology/ssaha/Makefile
  head/biology/tRNAscan-SE/Makefile

Modified: head/biology/ariadne/Makefile
==============================================================================
--- head/biology/ariadne/Makefile	Fri Oct 13 11:14:32 2017	(r451981)
+++ head/biology/ariadne/Makefile	Fri Oct 13 11:14:53 2017	(r451982)
@@ -11,6 +11,8 @@ COMMENT=	Programs to compare protein sequences and pro
 
 WRKSRC=		${WRKDIR}/SRC-${PORTVERSION}
 
+BROKEN=		No public distfiles
+
 PLIST_FILES+=	bin/ariadne bin/prospero
 USES=		gmake tar:Z
 PORTDOCS=	README

Modified: head/biology/biococoa/Makefile
==============================================================================
--- head/biology/biococoa/Makefile	Fri Oct 13 11:14:32 2017	(r451981)
+++ head/biology/biococoa/Makefile	Fri Oct 13 11:14:53 2017	(r451982)
@@ -4,7 +4,7 @@ PORTNAME=	biococoa
 PORTVERSION=	2.2.2
 PORTREVISION=	3
 CATEGORIES=	biology gnustep
-MASTER_SITES=	http://bioinformatics.org/biococoa/downloads/ DEBIAN/pool/main/b/biococoa.app
+MASTER_SITES=	http://bioinformatics.org/biococoa/downloads/
 DISTNAME=	biococoa-${PORTVERSION}-src
 EXTRACT_SUFX=	.tgz
 

Modified: head/biology/crux/Makefile
==============================================================================
--- head/biology/crux/Makefile	Fri Oct 13 11:14:32 2017	(r451981)
+++ head/biology/crux/Makefile	Fri Oct 13 11:14:53 2017	(r451982)
@@ -13,6 +13,7 @@ COMMENT=	Software toolkit for phylogenetic inference
 LICENSE=	BSD2CLAUSE BSD3CLAUSE
 LICENSE_COMB=	multi
 
+BROKEN=		No public distfiles
 BROKEN_aarch64=		Fails to link: ImportError: /lib/libgcc_s.so.1: version GCC_4.5.0 required by /usr/local/lib/gcc5/libgfortran.so.3 not found
 BROKEN_armv6=		Fails to link: ImportError: /usr/local/lib/gcc49/libgfortran.so.3: Undefined symbol "__aeabi_ldivmod"
 

Modified: head/biology/plink/Makefile
==============================================================================
--- head/biology/plink/Makefile	Fri Oct 13 11:14:32 2017	(r451981)
+++ head/biology/plink/Makefile	Fri Oct 13 11:14:53 2017	(r451982)
@@ -11,6 +11,8 @@ DISTNAME=	${PORTNAME}-${PORTVERSION}-src
 MAINTAINER=	bacon4000 at gmail.com
 COMMENT=	Whole genome association analysis toolset
 
+BROKEN=		no public distfiles
+
 LICENSE=	GPLv2
 
 LIB_DEPENDS=	liblapack.so:math/lapack

Modified: head/biology/ssaha/Makefile
==============================================================================
--- head/biology/ssaha/Makefile	Fri Oct 13 11:14:32 2017	(r451981)
+++ head/biology/ssaha/Makefile	Fri Oct 13 11:14:53 2017	(r451982)
@@ -11,6 +11,8 @@ DISTNAME=	${PORTNAME}_v${PORTVERSION:S/.//}
 MAINTAINER=	ports at FreeBSD.org
 COMMENT=	Very fast matching and alignment of DNA sequences
 
+BROKEN=		No public distfiles
+
 NO_WRKSUBDIR=	yes
 BUILD_WRKSRC=		${WRKSRC}/Binary
 

Modified: head/biology/tRNAscan-SE/Makefile
==============================================================================
--- head/biology/tRNAscan-SE/Makefile	Fri Oct 13 11:14:32 2017	(r451981)
+++ head/biology/tRNAscan-SE/Makefile	Fri Oct 13 11:14:53 2017	(r451982)
@@ -10,6 +10,8 @@ MASTER_SITES=	ftp://selab.janelia.org/pub/software/tRN
 MAINTAINER=	ports at FreeBSD.org
 COMMENT=	Improved tool for transfer RNA detection
 
+BROKEN=		No public distfiles
+
 USES=		perl5 tar:Z
 MAKE_ARGS=	BINDIR="${PREFIX}/bin" \
 		LIBDIR="${DATADIR}" \