svn commit: r434941 - in head/biology/plinkseq: . files
Jan Beich
jbeich at FreeBSD.org
Mon Feb 27 14:09:26 UTC 2017
Author: jbeich
Date: Mon Feb 27 14:09:25 2017
New Revision: 434941
URL: https://svnweb.freebsd.org/changeset/ports/434941
Log:
biology/plinkseq: unbreak with clang 4.0
PR: 216618
Submitted by: Jason Bacon <bacon4000 at gmail.com> (maintainer)
Added:
head/biology/plinkseq/files/
head/biology/plinkseq/files/patch-sources_plinkseq_sources_lib_r8lib.cpp (contents, props changed)
Modified:
head/biology/plinkseq/Makefile (contents, props changed)
Modified: head/biology/plinkseq/Makefile
==============================================================================
--- head/biology/plinkseq/Makefile Mon Feb 27 14:08:30 2017 (r434940)
+++ head/biology/plinkseq/Makefile Mon Feb 27 14:09:25 2017 (r434941)
@@ -3,6 +3,7 @@
PORTNAME= plinkseq
PORTVERSION= 0.10
+PORTREVISION= 1
CATEGORIES= biology science
MASTER_SITES= http://psychgen.u.hpc.mssm.edu/plinkseq_downloads/
# Default DISTNAME is correct, so leave it alone.
Added: head/biology/plinkseq/files/patch-sources_plinkseq_sources_lib_r8lib.cpp
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/plinkseq/files/patch-sources_plinkseq_sources_lib_r8lib.cpp Mon Feb 27 14:09:25 2017 (r434941)
@@ -0,0 +1,11 @@
+--- sources/plinkseq/sources/lib/r8lib.cpp.orig 2014-07-09 14:37:16 UTC
++++ sources/plinkseq/sources/lib/r8lib.cpp
+@@ -31828,7 +31828,7 @@ void r8vec_index_sorted_range ( int n, d
+ if ( r_hi < r[indx[*i_hi]] )
+ {
+ *i_hi = *i_hi - 1;
+- if ( i_hi < 0 )
++ if ( *i_hi < 0 )
+ {
+ *i_lo = *i_hi + 1;
+ }
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