svn commit: r383309 - in head/biology: consed migrate ncbi-blast+ njplot ortep3 p5-Bio-ASN1-EntrezGene paml platon povchem seaview

[Baptiste Daroussin]

Author: bapt
Date: Sun Apr  5 17:55:35 2015
New Revision: 383309
URL: https://svnweb.freebsd.org/changeset/ports/383309

Log:
  Mark as broken unfetchable ports

Modified:
  head/biology/consed/Makefile
  head/biology/migrate/Makefile
  head/biology/ncbi-blast+/Makefile
  head/biology/njplot/Makefile
  head/biology/ortep3/Makefile
  head/biology/p5-Bio-ASN1-EntrezGene/Makefile
  head/biology/paml/Makefile
  head/biology/platon/Makefile
  head/biology/povchem/Makefile
  head/biology/seaview/Makefile

Modified: head/biology/consed/Makefile
==============================================================================
--- head/biology/consed/Makefile	Sun Apr  5 17:29:01 2015	(r383308)
+++ head/biology/consed/Makefile	Sun Apr  5 17:55:35 2015	(r383309)
@@ -11,6 +11,8 @@ DISTNAME=	${PORTNAME}_linux
 MAINTAINER=	mzaki at m.u-tokyo.ac.jp
 COMMENT=	Graphical tool for editing Phrap assemblies
 
+BROKEN=		Unfetchable
+
 RUN_DEPENDS=	phred:${PORTSDIR}/biology/phred \
 		phrap:${PORTSDIR}/biology/phrap
 

Modified: head/biology/migrate/Makefile
==============================================================================
--- head/biology/migrate/Makefile	Sun Apr  5 17:29:01 2015	(r383308)
+++ head/biology/migrate/Makefile	Sun Apr  5 17:55:35 2015	(r383309)
@@ -10,6 +10,8 @@ DISTNAME=	${PORTNAME}-${PORTVERSION}.src
 MAINTAINER=	ports at FreeBSD.org
 COMMENT=	Program to estimate population sizes and migration rates
 
+BROKEN=		unfetchable
+
 GNU_CONFIGURE=	yes
 CONFIGURE_ENV=	ac_cv_prog_GMAKE="${MAKE}"
 MAKE_ARGS=	PRETTYCFLAGS="${CFLAGS} -DNOJPEG -DNOZLIB -DNOPNG -Iharu \

Modified: head/biology/ncbi-blast+/Makefile
==============================================================================
--- head/biology/ncbi-blast+/Makefile	Sun Apr  5 17:29:01 2015	(r383308)
+++ head/biology/ncbi-blast+/Makefile	Sun Apr  5 17:55:35 2015	(r383309)
@@ -12,6 +12,8 @@ DISTNAME=	ncbi-blast-${PORTVERSION}+-src
 MAINTAINER=	jwbacon at tds.net
 COMMENT=	NCBI implementation of Basic Local Alignment Search Tool
 
+BROKEN=		Unfetchable
+
 LICENSE=	Public_domain
 LICENSE_NAME=	Public Domain
 LICENSE_FILE=	${WRKSRC}/scripts/projects/blast/LICENSE

Modified: head/biology/njplot/Makefile
==============================================================================
--- head/biology/njplot/Makefile	Sun Apr  5 17:29:01 2015	(r383308)
+++ head/biology/njplot/Makefile	Sun Apr  5 17:55:35 2015	(r383309)
@@ -10,6 +10,8 @@ MASTER_SITES=	ftp://pbil.univ-lyon1.fr/p
 MAINTAINER=	mzaki at m.u-tokyo.ac.jp
 COMMENT=	Phylogenetic tree drawing program capable of interactive manipulation
 
+BROKEN=		Unfetchable
+
 OPTIONS_DEFINE=		DOCS X11
 OPTIONS_DEFAULT=	DOCS X11
 

Modified: head/biology/ortep3/Makefile
==============================================================================
--- head/biology/ortep3/Makefile	Sun Apr  5 17:29:01 2015	(r383308)
+++ head/biology/ortep3/Makefile	Sun Apr  5 17:55:35 2015	(r383309)
@@ -13,6 +13,8 @@ EXTRACT_ONLY=	ortep.tar.Z
 MAINTAINER=	ports at FreeBSD.org
 COMMENT=	Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure
 
+BROKEN=		Unfetchable
+
 PGPLOT_LIB_DEPENDS=	libpgplot.so:${PORTSDIR}/graphics/pgplot
 
 USES=		fortran

Modified: head/biology/p5-Bio-ASN1-EntrezGene/Makefile
==============================================================================
--- head/biology/p5-Bio-ASN1-EntrezGene/Makefile	Sun Apr  5 17:29:01 2015	(r383308)
+++ head/biology/p5-Bio-ASN1-EntrezGene/Makefile	Sun Apr  5 17:55:35 2015	(r383309)
@@ -11,6 +11,8 @@ PKGNAMEPREFIX=	p5-
 MAINTAINER=	mauricio at arareko.net
 COMMENT=	Regular expression-based Perl Parser for NCBI Entrez Gene
 
+BROKEN=		Unfetchable
+
 WRKSRC=		${WRKDIR}/Bio-ASN1-EntrezGene-1.09
 
 USES=		perl5 tar:tgz

Modified: head/biology/paml/Makefile
==============================================================================
--- head/biology/paml/Makefile	Sun Apr  5 17:29:01 2015	(r383308)
+++ head/biology/paml/Makefile	Sun Apr  5 17:55:35 2015	(r383309)
@@ -10,6 +10,8 @@ DISTNAME=	${PORTNAME}${PORTVERSION}
 MAINTAINER=	jrm at ftfl.ca
 COMMENT=	Phylogenetic Analysis by Maximum Likelihood (PAML)
 
+BROKEN=		Unfetchable
+
 USES=		gmake tar:tgz
 WRKSRC=		${WRKDIR}/${PORTNAME}${PORTVERSION}/src
 MAKE_ARGS=	CC="${CC}" CFLAGS="${CFLAGS}"

Modified: head/biology/platon/Makefile
==============================================================================
--- head/biology/platon/Makefile	Sun Apr  5 17:29:01 2015	(r383308)
+++ head/biology/platon/Makefile	Sun Apr  5 17:55:35 2015	(r383309)
@@ -16,6 +16,7 @@ COMMENT=	Tool for viewing molecular/crys
 # There is a charge of US$ 5000 for commercial users.
 NO_CDROM=	free for academic, US$ 5000 for commercial users
 
+BROKEN=		Unfetchable
 USES=		fortran
 USE_XORG=	x11
 

Modified: head/biology/povchem/Makefile
==============================================================================
--- head/biology/povchem/Makefile	Sun Apr  5 17:29:01 2015	(r383308)
+++ head/biology/povchem/Makefile	Sun Apr  5 17:55:35 2015	(r383309)
@@ -17,6 +17,7 @@ COMMENT=	Simple yet powerful tool to gen
 
 RUN_DEPENDS=	povray:${PORTSDIR}/graphics/povray-meta
 
+BROKEN=		Unfetchable
 NO_WRKSUBDIR=	yes
 
 USES=		dos2unix

Modified: head/biology/seaview/Makefile
==============================================================================
--- head/biology/seaview/Makefile	Sun Apr  5 17:29:01 2015	(r383308)
+++ head/biology/seaview/Makefile	Sun Apr  5 17:55:35 2015	(r383309)
@@ -14,6 +14,8 @@ COMMENT=	Multiple DNA/protein sequence a
 
 LICENSE=	GPLv3
 
+BROKEN=		Unfetchable
+
 LIB_DEPENDS=	libfltk.so:${PORTSDIR}/x11-toolkits/fltk \
 		libpng.so:${PORTSDIR}/graphics/png