svn commit: r353921 - head/biology/libsbml

[Wen Heping]

Author: wen
Date: Tue May 13 07:04:17 2014
New Revision: 353921
URL: http://svnweb.freebsd.org/changeset/ports/353921
QAT: https://qat.redports.org/buildarchive/r353921/

Log:
  - Update to 5.10.0

Modified:
  head/biology/libsbml/Makefile
  head/biology/libsbml/distinfo
  head/biology/libsbml/pkg-plist

Modified: head/biology/libsbml/Makefile
==============================================================================
--- head/biology/libsbml/Makefile	Tue May 13 06:59:44 2014	(r353920)
+++ head/biology/libsbml/Makefile	Tue May 13 07:04:17 2014	(r353921)
@@ -2,7 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	libsbml
-PORTVERSION=	5.9.0
+PORTVERSION=	5.10.0
 CATEGORIES=	biology devel
 MASTER_SITES=	SF
 MASTER_SITE_SUBDIR=	sbml/${PORTNAME}/${PORTVERSION}/stable
@@ -17,7 +17,7 @@ LIB_DEPENDS=	libxml2.so:${PORTSDIR}/text
 
 OPTIONS_DEFINE=	PYTHON RUBY EXAMPLES
 
-USES=		gmake
+USES=		gmake libtool
 GNU_CONFIGURE=	yes
 USE_LDCONFIG=	yes
 WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}

Modified: head/biology/libsbml/distinfo
==============================================================================
--- head/biology/libsbml/distinfo	Tue May 13 06:59:44 2014	(r353920)
+++ head/biology/libsbml/distinfo	Tue May 13 07:04:17 2014	(r353921)
@@ -1,2 +1,2 @@
-SHA256 (libSBML-5.9.0-core-src.tar.gz) = 8991e4a6876721999433495b747b790af7981ae57b485e6c92b7fbb105bd7e96
-SIZE (libSBML-5.9.0-core-src.tar.gz) = 11478158
+SHA256 (libSBML-5.10.0-core-src.tar.gz) = c7e733443caaf4615e90a29111ff988b89b1c9a679de0a9737fc2a86840df1e0
+SIZE (libSBML-5.10.0-core-src.tar.gz) = 11577010

Modified: head/biology/libsbml/pkg-plist
==============================================================================
--- head/biology/libsbml/pkg-plist	Tue May 13 06:59:44 2014	(r353920)
+++ head/biology/libsbml/pkg-plist	Tue May 13 07:04:17 2014	(r353921)
@@ -137,6 +137,7 @@ include/sbml/conversion/SBMLInferUnitsCo
 include/sbml/conversion/SBMLInitialAssignmentConverter.h
 include/sbml/conversion/SBMLLevelVersionConverter.h
 include/sbml/conversion/SBMLLocalParameterConverter.h
+include/sbml/conversion/SBMLReactionConverter.h
 include/sbml/conversion/SBMLRuleConverter.h
 include/sbml/conversion/SBMLStripPackageConverter.h
 include/sbml/conversion/SBMLUnitsConverter.h
@@ -165,9 +166,9 @@ include/sbml/validator/SBMLInternalValid
 include/sbml/validator/SBMLValidator.h
 include/sbml/xml/XMLConstructorException.h
 include/sbml/xml/XMLLogOverride.h
-lib/libsbml.so.14
+lib/libsbml.so.5.10.0
+lib/libsbml.so.5
 lib/libsbml.so
-lib/libsbml.la
 lib/libsbml.a
 %%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml/_libsbml.so
 %%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml.pth
@@ -489,3 +490,35 @@ lib/libsbml.a
 @dirrm include/sbml/validator
 @dirrm include/sbml/xml
 @dirrm include/sbml/
+include/sbml/extension/ASTBasePlugin.h
+include/sbml/math/ASTBase.h
+include/sbml/math/ASTBinaryFunctionNode.h
+include/sbml/math/ASTCSymbol.h
+include/sbml/math/ASTCSymbolAvogadroNode.h
+include/sbml/math/ASTCSymbolDelayNode.h
+include/sbml/math/ASTCSymbolTimeNode.h
+include/sbml/math/ASTCiFunctionNode.h
+include/sbml/math/ASTCiNumberNode.h
+include/sbml/math/ASTCnBase.h
+include/sbml/math/ASTCnExponentialNode.h
+include/sbml/math/ASTCnIntegerNode.h
+include/sbml/math/ASTCnRationalNode.h
+include/sbml/math/ASTCnRealNode.h
+include/sbml/math/ASTConstantNumberNode.h
+include/sbml/math/ASTFunction.h
+include/sbml/math/ASTFunctionBase.h
+include/sbml/math/ASTLambdaFunctionNode.h
+include/sbml/math/ASTNaryFunctionNode.h
+include/sbml/math/ASTNumber.h
+include/sbml/math/ASTPiecewiseFunctionNode.h
+include/sbml/math/ASTQualifierNode.h
+include/sbml/math/ASTSemanticsNode.h
+include/sbml/math/ASTTypes.h
+include/sbml/math/ASTUnaryFunctionNode.h
+include/sbml/util/PrefixTransformer.h
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/convertReactions.cpp
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/layout/CMakeLists.txt
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/layout/CMakeLists.txt
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/layout/CMakeLists.txt
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout-package.cmake
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/layout/convertLayout.py