svn commit: r352855 - in head: graphics/gdal graphics/gmt graphics/grads graphics/opendx math/grace math/gri math/labplot math/octave-forge-netcdf math/octave-forge-octcdf math/p5-NetCDF math/petsc...

Sunpoet Po-Chuan Hsieh sunpoet at FreeBSD.org
Sat May 3 03:17:25 UTC 2014 

Author: sunpoet
Date: Sat May  3 03:17:19 2014
New Revision: 352855
URL: http://svnweb.freebsd.org/changeset/ports/352855
QAT: https://qat.redports.org/buildarchive/r352855/

Log:
  - Update to 4.3.2 (from science/netcdf4)
  - Bump PORTREVISION for science/netcdf shlib change and
    dependency change from science/netcdf4 to science/netcdf [1]
  
  Changes:	http://www.unidata.ucar.edu/software/netcdf/docs/release_notes.html
  Approved by:	portmgr (bapt) [1]

Modified:
  head/graphics/gdal/Makefile
  head/graphics/gmt/Makefile
  head/graphics/grads/Makefile
  head/graphics/opendx/Makefile
  head/math/grace/Makefile
  head/math/gri/Makefile
  head/math/labplot/Makefile
  head/math/octave-forge-netcdf/Makefile
  head/math/octave-forge-octcdf/Makefile
  head/math/p5-NetCDF/Makefile
  head/math/petsc/Makefile
  head/math/py-scientific/Makefile
  head/science/gnudatalanguage/Makefile
  head/science/kst2/Makefile
  head/science/minc/Makefile
  head/science/minc2/Makefile
  head/science/netcdf/Makefile
  head/science/netcdf/distinfo
  head/science/netcdf/pkg-descr
  head/science/netcdf/pkg-plist
  head/science/py-netCDF4/Makefile
  head/science/pycdf/Makefile
  head/science/ruby-netcdf/Makefile
  head/science/rubygem-netcdf/Makefile
  head/science/v_sim/Makefile
  head/science/vmd/Makefile

Modified: head/graphics/gdal/Makefile
==============================================================================
--- head/graphics/gdal/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/graphics/gdal/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,7 +3,7 @@
 
 PORTNAME=	gdal
 PORTVERSION=	1.11.0
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	graphics geography
 MASTER_SITES=	http://download.osgeo.org/gdal/${PORTVERSION}/ \
 		ftp://ftp.remotesensing.org/pub/gdal/${PORTVERSION}/ \
@@ -91,7 +91,7 @@ MYSQL_CONFIGURE_ON=	--with-mysql=${LOCAL
 MYSQL_USE=		MYSQL=yes
 NETCDF_CONFIGURE_OFF=	--with-netcdf=no
 NETCDF_CONFIGURE_ON=	--with-netcdf=${LOCALBASE}
-NETCDF_LIB_DEPENDS=	libnetcdf.so.7:${PORTSDIR}/science/netcdf4
+NETCDF_LIB_DEPENDS=	libnetcdf.so:${PORTSDIR}/science/netcdf
 ODBC_CONFIGURE_OFF=	--with-odbc=no
 ODBC_CONFIGURE_ON=	--with-odbc=${LOCALBASE}
 ODBC_LIB_DEPENDS=	libodbc.so:${PORTSDIR}/databases/unixODBC

Modified: head/graphics/gmt/Makefile
==============================================================================
--- head/graphics/gmt/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/graphics/gmt/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,7 +3,7 @@
 
 PORTNAME=	gmt
 PORTVERSION=	4.5.12
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	graphics
 MASTER_SITES=	ftp://ftp.soest.hawaii.edu/%SUBDIR%/ \
 		ftp://ftp.geologi.uio.no/pub/%SUBDIR%/ \
@@ -25,7 +25,7 @@ LICENSE_COMB=	multi
 LICENSE_DISTFILES_GPLv2=	${DISTNAME}${EXTRACT_SUFX}
 LICENSE_DISTFILES_LGPL3=	${GSHHG_DISTNAME}${EXTRACT_SUFX}
 
-LIB_DEPENDS=	libnetcdf.so:${PORTSDIR}/science/netcdf4
+LIB_DEPENDS=	libnetcdf.so:${PORTSDIR}/science/netcdf
 RUN_DEPENDS=	bash:${PORTSDIR}/shells/bash
 
 WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}

Modified: head/graphics/grads/Makefile
==============================================================================
--- head/graphics/grads/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/graphics/grads/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,7 +3,7 @@
 
 PORTNAME=	grads
 PORTVERSION=	1.9b4
-PORTREVISION=	8
+PORTREVISION=	9
 CATEGORIES=	graphics science math
 MASTER_SITES=	ftp://grads.iges.org/grads/1.9/:src \
 		ftp://grads.iges.org/grads/:other
@@ -55,7 +55,7 @@ PLIST_SUB+=		NETCDF="@comment " HDF=""
 .endif
 
 .if ${PORT_OPTIONS:MNETCDF}
-LIB_DEPENDS+=		netcdf:${PORTSDIR}/science/netcdf4
+LIB_DEPENDS+=		libnetcdf.so:${PORTSDIR}/science/netcdf
 CONFIGURE_ARGS+=	--with-nc
 PLIST_SUB+=		NETCDF="" HDF="@comment "
 .endif

Modified: head/graphics/opendx/Makefile
==============================================================================
--- head/graphics/opendx/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/graphics/opendx/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,7 +3,7 @@
 
 PORTNAME=	opendx
 PORTVERSION=	4.4.4
-PORTREVISION=	15
+PORTREVISION=	16
 CATEGORIES=	graphics math java
 MASTER_SITES=	http://www.sfr-fresh.com/unix/misc/
 DISTNAME=	dx-${PORTVERSION}
@@ -40,7 +40,7 @@ CONFIGURE_ARGS+=	--without-hdf
 .endif
 
 .if !defined(WITHOUT_NETCDF)
-LIB_DEPENDS+=	netcdf:${PORTSDIR}/science/netcdf4
+LIB_DEPENDS+=	libnetcdf.so:${PORTSDIR}/science/netcdf
 .else
 CONFIGURE_ARGS+=	--without-netcdf
 .endif

Modified: head/math/grace/Makefile
==============================================================================
--- head/math/grace/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/math/grace/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,7 +3,7 @@
 
 PORTNAME=	grace
 PORTVERSION=	5.1.23
-PORTREVISION=	3
+PORTREVISION=	4
 CATEGORIES=	math print
 MASTER_SITES=	ftp://ftp.fu-berlin.de/unix/graphics/grace/src/stable/ \
 		ftp://ftp.ntua.gr/pub/graphics/grace/src/stable/ \
@@ -51,7 +51,7 @@ CONFIGURE_ARGS+=	--without-fftw
 .endif
 
 .if ${PORT_OPTIONS:MNETCDF}
-LIB_DEPENDS+=	netcdf:${PORTSDIR}/science/netcdf
+LIB_DEPENDS+=	libnetcdf.so:${PORTSDIR}/science/netcdf
 CONFIGURE_ARGS+=	--enable-netcdf
 .else
 CONFIGURE_ARGS+=	--disable-netcdf

Modified: head/math/gri/Makefile
==============================================================================
--- head/math/gri/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/math/gri/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,13 +3,14 @@
 
 PORTNAME=	gri
 PORTVERSION=	2.12.23
+PORTREVISION=	1
 CATEGORIES=	math
 MASTER_SITES=	SF
 
 MAINTAINER=	ports at FreeBSD.org
 COMMENT=	Extensible plotting language for producing scientific graphs
 
-LIB_DEPENDS=	netcdf:${PORTSDIR}/science/netcdf
+LIB_DEPENDS=	libnetcdf.so:${PORTSDIR}/science/netcdf
 
 USES=		readline
 USE_GMAKE=	yes

Modified: head/math/labplot/Makefile
==============================================================================
--- head/math/labplot/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/math/labplot/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,7 +3,7 @@
 
 PORTNAME=	labplot
 DISTVERSION=	2.0.0.beta2
-PORTREVISION=	3
+PORTREVISION=	4
 CATEGORIES=	math kde
 MASTER_SITES=	SF/${PORTNAME}/${PORTNAME}/${PORTVERSION:R}
 

Modified: head/math/octave-forge-netcdf/Makefile
==============================================================================
--- head/math/octave-forge-netcdf/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/math/octave-forge-netcdf/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,7 +3,7 @@
 
 PORTNAME=	octave-forge-netcdf
 PORTVERSION=	1.0.2
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	math
 
 MAINTAINER=	stephen at FreeBSD.org
@@ -17,7 +17,7 @@ OCTSRC=		${OCTAVE_PKGNAME}
 
 WRKSRC=		${WRKDIR}/${OCTSRC}/src
 
-LIB_DEPENDS+=	netcdf:${PORTSDIR}/science/netcdf4
+LIB_DEPENDS+=	libnetcdf.so:${PORTSDIR}/science/netcdf
 
 .include "${.CURDIR}/../../Mk/bsd.octave.mk"
 

Modified: head/math/octave-forge-octcdf/Makefile
==============================================================================
--- head/math/octave-forge-octcdf/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/math/octave-forge-octcdf/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,7 +3,7 @@
 
 PORTNAME=	octave-forge-octcdf
 PORTVERSION=	1.1.7
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	math
 
 MAINTAINER=	stephen at FreeBSD.org
@@ -17,7 +17,7 @@ OCTSRC=		${OCTAVE_PKGNAME}
 
 WRKSRC=		${WRKDIR}/${OCTSRC}/src
 
-LIB_DEPENDS+=	netcdf:${PORTSDIR}/science/netcdf4
+LIB_DEPENDS+=	libnetcdf.so:${PORTSDIR}/science/netcdf
 
 .include "${.CURDIR}/../../Mk/bsd.octave.mk"
 

Modified: head/math/p5-NetCDF/Makefile
==============================================================================
--- head/math/p5-NetCDF/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/math/p5-NetCDF/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,7 +3,7 @@
 
 PORTNAME=	NetCDF
 PORTVERSION=	1.2.4
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	math perl5
 MASTER_SITES=	ftp://ftp.unidata.ucar.edu/pub/netcdf-perl/
 PKGNAMEPREFIX=	p5-
@@ -12,13 +12,7 @@ DISTNAME=	netcdf-perl-${PORTVERSION}
 MAINTAINER=	rand at meridian-enviro.com
 COMMENT=	Perl5 module to read and write netCDF files
 
-NETCDF_VER?=	4
-
-.if (${NETCDF_VER} == 4)
-LIB_DEPENDS=	libnetcdf.so.7:${PORTSDIR}/science/netcdf4
-.else
-LIB_DEPENDS=	libnetcdf.so.4:${PORTSDIR}/science/netcdf
-.endif
+LIB_DEPENDS=	libnetcdf.so:${PORTSDIR}/science/netcdf
 
 USES=		perl5
 

Modified: head/math/petsc/Makefile
==============================================================================
--- head/math/petsc/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/math/petsc/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,7 +3,7 @@
 
 PORTNAME=	petsc
 DISTVERSION=	2.3.3-p0
-PORTREVISION=	9
+PORTREVISION=	10
 PORTEPOCH=	1
 CATEGORIES=	math parallel
 MASTER_SITES=	ftp://ftp.mcs.anl.gov/pub/petsc/release-snapshots/
@@ -187,7 +187,7 @@ CONFIGURE_ARGS+=	--with-scalapack=1	\
 WITH_NETCDF=	yes
 .endif
 .if defined(WITH_NETCDF)
-LIB_DEPENDS+=	netcdf.4:${PORTSDIR}/science/netcdf
+LIB_DEPENDS+=	libnetcdf.so:${PORTSDIR}/science/netcdf
 CONFIGURE_ENV+=	PNETCDF_INCLUDE=${LOCALBASE}/include	\
 		PNETCDF_LIB=${LOCALBASE}/lib
 .endif

Modified: head/math/py-scientific/Makefile
==============================================================================
--- head/math/py-scientific/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/math/py-scientific/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,7 +3,7 @@
 
 PORTNAME=	scientific
 PORTVERSION=	2.8
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	math python
 MASTER_SITES=	http://sourcesup.cru.fr/frs/download.php/2309/
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
@@ -13,7 +13,7 @@ MAINTAINER=	fmysh at iijmio-mail.jp
 COMMENT=	Collection of Python modules for scientific computing
 
 BUILD_DEPENDS=	${PYNUMPY}
-LIB_DEPENDS=	netcdf.4:${PORTSDIR}/science/netcdf
+LIB_DEPENDS=	libnetcdf.so:${PORTSDIR}/science/netcdf
 RUN_DEPENDS=	${PYNUMPY}
 
 USE_PYTHON=	yes

Modified: head/science/gnudatalanguage/Makefile
==============================================================================
--- head/science/gnudatalanguage/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/science/gnudatalanguage/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,7 +3,7 @@
 
 PORTNAME=	gnudatalanguage
 DISTVERSION=	0.9.4
-PORTREVISION=	4
+PORTREVISION=	5
 CATEGORIES=	science lang
 MASTER_SITES=	SF/${PORTNAME}/gdl/${DISTVERSION}
 .if defined(BUILD_PYTHON_MODULE)

Modified: head/science/kst2/Makefile
==============================================================================
--- head/science/kst2/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/science/kst2/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,7 +3,7 @@
 
 PORTNAME=	kst
 DISTVERSION=	2.0.6
-PORTREVISION=	3
+PORTREVISION=	4
 CATEGORIES=	science kde
 MASTER_SITES=	SF/${PORTNAME}/Kst%20${DISTVERSION:C/-r.*//}/
 

Modified: head/science/minc/Makefile
==============================================================================
--- head/science/minc/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/science/minc/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -12,13 +12,14 @@
 
 PORTNAME=	minc
 PORTVERSION=	1.5.1
+PORTREVISION=	1
 CATEGORIES=	science biology
 MASTER_SITES=	http://www.nitrc.org/frs/downloadlink.php/400/
 
 MAINTAINER=	jwbacon at tds.net
 COMMENT=	Medical Imaging NetCDF
 
-LIB_DEPENDS=	netcdf.4:${PORTSDIR}/science/netcdf
+LIB_DEPENDS=	libnetcdf.so:${PORTSDIR}/science/netcdf
 
 USE_AUTOTOOLS=	libtool
 USE_LDCONFIG=	yes

Modified: head/science/minc2/Makefile
==============================================================================
--- head/science/minc2/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/science/minc2/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -12,7 +12,7 @@
 
 PORTNAME=	minc
 PORTVERSION=	2.0.18
-PORTREVISION=	1
+PORTREVISION=	2
 PORTEPOCH=	1
 CATEGORIES=	science biology
 MASTER_SITES=	http://packages.bic.mni.mcgill.ca/tgz/ \
@@ -24,7 +24,7 @@ COMMENT=	Medical Imaging NetCDF
 
 LICENSE=	BSD
 
-LIB_DEPENDS=	libnetcdf.so.4:${PORTSDIR}/science/netcdf \
+LIB_DEPENDS=	libnetcdf.so:${PORTSDIR}/science/netcdf \
 		libhdf5.so:${PORTSDIR}/science/hdf5
 
 USE_AUTOTOOLS=	libtool

Modified: head/science/netcdf/Makefile
==============================================================================
--- head/science/netcdf/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/science/netcdf/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -1,65 +1,65 @@
-# Created by: Thomas Gellekum <tg at FreeBSD.org>
+# Created by: Sunpoet Po-Chuan Hsieh <sunpoet at sunpoet.net>
 # $FreeBSD$
 
 PORTNAME=	netcdf
-PORTVERSION=	3.6.3
-PORTREVISION?=	7
+PORTVERSION=	4.3.2
 CATEGORIES=	science
 MASTER_SITES=	http://www.unidata.ucar.edu/downloads/netcdf/ftp/ \
 		ftp://ftp.unidata.ucar.edu/pub/netcdf/ \
 		LOCAL/sunpoet
-PKGNAMESUFFIX?=	3
 
 MAINTAINER=	sunpoet at FreeBSD.org
-COMMENT?=	Library for machine-independent, array-oriented data access
+COMMENT=	C library for machine-independent, array-oriented data access
 
-CONFLICTS=	hdf-4.* netcdf-4.*
-PORTSCOUT=	limit:^3\.
+LIB_DEPENDS=	libhdf5.so:${PORTSDIR}/science/hdf5
 
-CONFIGURE_ARGS=	--enable-shared
-CPPFLAGS+=	-I${LOCALBASE}/include -fPIC -DPIC
-GNU_CONFIGURE=	yes
-USES=		gmake libtool:keepla
+CONFLICTS_INSTALL=	hdf-4.[0-9]* netcdf-3.[0-9]* netcdf3-3.[0-9]*
+PORTSCOUT=	limit:^4\.
+
+OPTIONS_DEFINE=	DAP DOCS DOXYGEN SZIP
+OPTIONS_DEFAULT=DAP SZIP
+DAP_DESC=	Build DAP client and remote testing
+SZIP_DESC=	SZIP support (required if HDF5 was built with SZIP)
+
+CFLAGS+=	-I${WRKSRC}/include -I${LOCALBASE}/include -fPIC -DPIC
+CMAKE_ARGS=	-DHDF5_INCLUDE_DIRS=${LOCALBASE} -DUSE_HDF5=ON -DZLIB_INCLUDE_DIRS=/usr
+LDFLAGS+=	-L${LOCALBASE}/lib
 USE_LDCONFIG=	yes
+USES=		cmake pathfix
 
-INFO=		netcdf netcdf-c netcdf-cxx netcdf-f77 netcdf-f90 \
-		netcdf-install netcdf-tutorial
+PLIST_SUB=	PORTVERSION=${PORTVERSION}
+PORTDOCS=	*
 
-OPTIONS_DEFINE=	FORTRAN DOCS
-FORTRAN_DESC=	Build library for Fortran
+DAP_CMAKE_OFF=		-DENABLE_DAP=OFF -DENABLE_DAP_REMOTE_TESTS=OFF
+DAP_CMAKE_ON=		-DCURL_INCLUDE_DIRS=${LOCALBASE} -DENABLE_DAP=ON
+DAP_LIB_DEPENDS=	libcurl.so:${PORTSDIR}/ftp/curl
+DOXYGEN_BUILD_DEPENDS=	${LOCALBASE}/bin/doxygen:${PORTSDIR}/devel/doxygen
+DOXYGEN_CMAKE_OFF=	-DENABLE_DOXYGEN=OFF
+DOXYGEN_CMAKE_ON=	-DENABLE_DOXYGEN=ON
+SZIP_CMAKE_OFF=		-DUSE_SZIP=OFF
+SZIP_CMAKE_ON=		-DSZIP_DIR=${LOCALBASE} -DSZIP_INCLUDE_DIRS=${LOCALBASE} -DUSE_SZIP=ON
+SZIP_LDFLAGS=		-lsz
+SZIP_LIB_DEPENDS=	libsz.so:${PORTSDIR}/science/szip
 
 .include <bsd.port.options.mk>
 
-.if ${PORT_OPTIONS:MDOCS}
-CONFIGURE_ARGS+=--enable-docs-install
-.else
-CONFIGURE_ARGS+=--disable-docs-install
-.endif
-
-.if ${PORT_OPTIONS:MFORTRAN}
-CPPFLAGS+=	-DpgiFortran
-CONFLICTS+=	netcdf-3.*
-PLIST_SUB+=	FORTRAN=""
-USES+=		fortran
-.else
-CONFIGURE_ARGS+=--disable-f77 --disable-f90
-CONFLICTS+=	netcdf-ftn-3.*
-PLIST_SUB+=	FORTRAN="@comment "
+post-patch:
+	@${REINPLACE_CMD} -e '/man4/d; s|share/cmake|&/Modules|; s|$${CMAKE_INSTALL_LIBDIR}/pkgconfig|libdata/pkgconfig|' ${WRKSRC}/CMakeLists.txt
+	@${REINPLACE_CMD} -e 's|share/man|man|' ${WRKSRC}/libsrc/CMakeLists.txt ${WRKSRC}/ncdump/CMakeLists.txt ${WRKSRC}/ncgen/CMakeLists.txt ${WRKSRC}/ncgen3/CMakeLists.txt
+	@${REINPLACE_CMD} -e 's|mmap|_&|g' ${WRKSRC}/nc_test/tst_diskless.c ${WRKSRC}/nc_test/tst_diskless3.c
+
+post-build:
+.if ${PORT_OPTIONS:MDOCS} && ${PORT_OPTIONS:MDOXYGEN}
+	@cd ${WRKSRC}/man4 && ${LOCALBASE}/bin/doxygen .
 .endif
 
-post-patch:
-	@${REINPLACE_CMD} -e \
-		'291 s/\(html_docs)\).*/\1/' \
-		${WRKSRC}/man/Makefile.in
-	@${REINPLACE_CMD} -e \
-		'271 s/\(info_docs\).*/html_docs\)/' \
-		${WRKSRC}/man4/Makefile.in
-.if ! ${PORT_OPTIONS:MDOCS}
-	@${REINPLACE_CMD} -e '790 s/install-docDATA //' \
-		${WRKSRC}/man/Makefile.in
+post-install:
+.if ${PORT_OPTIONS:MDOCS} && ${PORT_OPTIONS:MDOXYGEN}
+	${MKDIR} ${STAGEDIR}${DOCSDIR}/
+	cd ${WRKSRC}/man4/html/ && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR}
 .endif
 
-regression-test: build
-	@cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ${MAKE} check
+regression-test test: build
+	cd ${WRKSRC}/ && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} check
 
 .include <bsd.port.mk>

Modified: head/science/netcdf/distinfo
==============================================================================
--- head/science/netcdf/distinfo	Sat May  3 00:55:30 2014	(r352854)
+++ head/science/netcdf/distinfo	Sat May  3 03:17:19 2014	(r352855)
@@ -1,2 +1,2 @@
-SHA256 (netcdf-3.6.3.tar.gz) = afa1a0fa82b9ea33b035257b6e9662b22e135f98b2fd93d5cf030320dfc3ffa1
-SIZE (netcdf-3.6.3.tar.gz) = 11572512
+SHA256 (netcdf-4.3.2.tar.gz) = 57086b4383ce9232f05aad70761c2a6034b1a0c040260577d369b3bbfe6d248e
+SIZE (netcdf-4.3.2.tar.gz) = 5013938

Modified: head/science/netcdf/pkg-descr
==============================================================================
--- head/science/netcdf/pkg-descr	Sat May  3 00:55:30 2014	(r352854)
+++ head/science/netcdf/pkg-descr	Sat May  3 03:17:19 2014	(r352855)
@@ -6,4 +6,6 @@ library, and format support the creation
 scientific data. The netCDF software was developed at the Unidata
 Program Center in Boulder, Colorado.
 
+Git repository: https://github.com/Unidata/netcdf-c
+
 WWW: http://www.unidata.ucar.edu/software/netcdf/

Modified: head/science/netcdf/pkg-plist
==============================================================================
--- head/science/netcdf/pkg-plist	Sat May  3 00:55:30 2014	(r352854)
+++ head/science/netcdf/pkg-plist	Sat May  3 03:17:19 2014	(r352855)
@@ -1,63 +1,21 @@
+bin/nc-config
+bin/nccopy
 bin/ncdump
 bin/ncgen
-include/ncvalues.h
+bin/ncgen3
 include/netcdf.h
-include/netcdf.hh
-%%FORTRAN%%include/netcdf.inc
-%%FORTRAN%%include/netcdf.mod
-include/netcdfcpp.h
-%%FORTRAN%%include/typesizes.mod
-lib/libnetcdf.a
-lib/libnetcdf.la
 lib/libnetcdf.so
-lib/libnetcdf.so.4
-lib/libnetcdf.so.4.0.0
-lib/libnetcdf_c++.a
-lib/libnetcdf_c++.la
-lib/libnetcdf_c++.so
-lib/libnetcdf_c++.so.4
-lib/libnetcdf_c++.so.4.0.0
-%%FORTRAN%%lib/libnetcdff.a
-%%FORTRAN%%lib/libnetcdff.la
-%%FORTRAN%%lib/libnetcdff.so
-%%FORTRAN%%lib/libnetcdff.so.4
-%%FORTRAN%%lib/libnetcdff.so.4.0.0
+lib/libnetcdf.so.%%PORTVERSION%%
+lib/libnetcdf.so.7.2.0
+libdata/pkgconfig/netcdf.pc
+man/man1/nccopy.1.gz
 man/man1/ncdump.1.gz
 man/man1/ncgen.1.gz
+man/man1/ncgen3.1.gz
 man/man3/netcdf.3.gz
-%%FORTRAN%%man/man3/netcdf_f77.3.gz
-%%FORTRAN%%man/man3/netcdf_f90.3.gz
-%%PORTDOCS%%%%DOCSDIR%%/ncgen-man-1.html
-%%PORTDOCS%%%%DOCSDIR%%/ncdump-man-1.html
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-c.html
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-c.pdf
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-c.ps
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-c.txt
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-cxx.html
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-cxx.pdf
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-cxx.ps
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-cxx.txt
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-f77.html
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-f77.pdf
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-f77.ps
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-f77.txt
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-f90.html
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-f90.pdf
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-f90.ps
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-f90.txt
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-install.html
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-install.pdf
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-install.ps
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-install.txt
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-man-3.html
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-tutorial.html
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-tutorial.pdf
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-tutorial.ps
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-tutorial.txt
-%%PORTDOCS%%%%DOCSDIR%%/netcdf_f77-man.html
-%%PORTDOCS%%%%DOCSDIR%%/netcdf_f90-man.html
-%%PORTDOCS%%%%DOCSDIR%%/netcdf.html
-%%PORTDOCS%%%%DOCSDIR%%/netcdf.pdf
-%%PORTDOCS%%%%DOCSDIR%%/netcdf.ps
-%%PORTDOCS%%%%DOCSDIR%%/netcdf.txt
-%%PORTDOCS%%@dirrm %%DOCSDIR%%
+share/cmake/Modules/netcdf-config-version.cmake
+share/cmake/Modules/netcdf-config.cmake
+share/cmake/Modules/netcdf-targets-%%CMAKE_BUILD_TYPE%%.cmake
+share/cmake/Modules/netcdf-targets.cmake
+ at dirrmtry share/cmake/Modules
+ at dirrmtry share/cmake

Modified: head/science/py-netCDF4/Makefile
==============================================================================
--- head/science/py-netCDF4/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/science/py-netCDF4/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,7 +3,7 @@
 
 PORTNAME=	netCDF4
 PORTVERSION=	1.0.5
-PORTREVISION=	3
+PORTREVISION=	4
 CATEGORIES=	science python
 MASTER_SITES=	GOOGLE_CODE
 PROJECTHOST=	netcdf4-python
@@ -16,7 +16,7 @@ LICENSE=	MIT
 
 BUILD_DEPENDS=	${PYNUMPY}
 LIB_DEPENDS=	libhdf5.so:${PORTSDIR}/science/hdf5 \
-		libnetcdf.so:${PORTSDIR}/science/netcdf4
+		libnetcdf.so:${PORTSDIR}/science/netcdf
 RUN_DEPENDS=	${PYNUMPY}
 
 OPTIONS_DEFINE=	DOCS EXAMPLES

Modified: head/science/pycdf/Makefile
==============================================================================
--- head/science/pycdf/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/science/pycdf/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,7 +3,7 @@
 
 PORTNAME=	pycdf
 PORTVERSION=	0.6.3
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	science python
 MASTER_SITES=	SF/pysclint/${PORTNAME}/${PORTNAME}-${PORTVERSION}b
 DISTNAME=	${PORTNAME}-0.6-3b
@@ -11,8 +11,8 @@ DISTNAME=	${PORTNAME}-0.6-3b
 MAINTAINER=	wenheping at gmail.com
 COMMENT=	A Python Interface to the Unidata NetCDF Library
 
-BUILD_DEPENDS=	${PYTHON_SITELIBDIR}/numpy:${PORTSDIR}/math/py-numpy \
-		${LOCALBASE}/lib/libnetcdf.so:${PORTSDIR}/science/netcdf
+BUILD_DEPENDS=	${PYTHON_SITELIBDIR}/numpy:${PORTSDIR}/math/py-numpy
+LIB_DEPENDS=	libnetcdf.so:${PORTSDIR}/science/netcdf
 RUN_DEPENDS:=	${BUILD_DEPENDS}
 
 LDFLAGS+=	"-L${LOCALBASE}/lib"

Modified: head/science/ruby-netcdf/Makefile
==============================================================================
--- head/science/ruby-netcdf/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/science/ruby-netcdf/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,7 +3,7 @@
 
 PORTNAME=	netcdf
 PORTVERSION=	0.6.6
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	science ruby
 MASTER_SITES=	http://ruby.gfd-dennou.org/products/ruby-netcdf/release/ \
 		http://dennou-h.gfd-dennou.org/library/ruby/products/ruby-netcdf/release/ \

Modified: head/science/rubygem-netcdf/Makefile
==============================================================================
--- head/science/rubygem-netcdf/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/science/rubygem-netcdf/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,6 +3,7 @@
 
 PORTNAME=	netcdf
 PORTVERSION=	0.6.6.1
+PORTREVISION=	1
 CATEGORIES=	science rubygems
 MASTER_SITES=	RG
 DISTNAME=	ruby-${PORTNAME}-${PORTVERSION}

Modified: head/science/v_sim/Makefile
==============================================================================
--- head/science/v_sim/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/science/v_sim/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,6 +3,7 @@
 
 PORTNAME=	v_sim
 PORTVERSION=	3.7.1
+PORTREVISION=	1
 CATEGORIES=	science
 MASTER_SITES=	http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/download/
 

Modified: head/science/vmd/Makefile
==============================================================================
--- head/science/vmd/Makefile	Sat May  3 00:55:30 2014	(r352854)
+++ head/science/vmd/Makefile	Sat May  3 03:17:19 2014	(r352855)
@@ -3,6 +3,7 @@
 
 PORTNAME=		vmd
 DISTVERSION=		1.9.1
+PORTREVISION=		1
 CATEGORIES=		science graphics python tcl tk
 MASTER_SITES=		http://jedi.ks.uiuc.edu/~johns/raytracer/files/0.99b2/:tachyon \
 			http://www.photonlimited.com/~johns/tachyon/files/0.99b2/:tachyon \
@@ -16,10 +17,10 @@ COMMENT=		A molecular visualization prog
 
 BUILD_DEPENDS=		makedepend:${PORTSDIR}/devel/makedepend \
 			${PYNUMERIC}
-LIB_DEPENDS=		tcl85:${PORTSDIR}/lang/tcl85 \
-			tk85:${PORTSDIR}/x11-toolkits/tk85 \
-			fltk.1:${PORTSDIR}/x11-toolkits/fltk \
-			netcdf:${PORTSDIR}/science/netcdf
+LIB_DEPENDS=		libtcl85.so:${PORTSDIR}/lang/tcl85 \
+			libtk85.so:${PORTSDIR}/x11-toolkits/tk85 \
+			libfltk.so:${PORTSDIR}/x11-toolkits/fltk \
+			libnetcdf.so:${PORTSDIR}/science/netcdf
 RUN_DEPENDS=		${PYNUMERIC}
 
 USES=			gmake perl5

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