py-numpy build failure, multiple definition of `__i686.get_pc_thunk.bx'

Charlie Kester corky1951 at comcast.net
Fri Feb 4 05:28:20 UTC 2011


I've encountered the problem described in PR146801, which unfortunately
was closed without getting to the root cause. (The problem seems to have
gone away as mysteriously as when it appeared. No one seems to know why
either event occurred.)

py-numpy is, as you know, used by many other ports.  
So I'd really like to know how to fix this.

FreeBSD 8.2-PRERELEASE #0: Thu Feb  3 17:45:33 PST 2011

Portstree also updated on Feb 3.

Default python version is 2.7. 
(But pkg_add -r wants to install py26-numpy.  So that solution is unavailable.)

customize UnixCCompiler
customize UnixCCompiler using build_ext
customize Gnu95FCompiler
customize Gnu95FCompiler using build_ext
building 'numpy.core._sort' extension
compiling C sources
C compiler: gcc45 -DNDEBUG -mtune=generic -msse -msse2 -msse3 -mfpmath=sse -O2 -fno-strict-aliasing -pipe -D__wchar_t=wchar_t -DTHREAD_STACK_SIZE=0x20000 -mtune=generic -msse -msse2 -msse3 -mfpmath=sse -O2 -fno-strict-aliasing -pipe -Wl,-rpath=/usr/local/lib/gcc45 -fPIC

compile options: '-Inumpy/core/include -Ibuild/src.freebsd-8.2-PRERELEASE-i386-2.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/local/include/python2.7 -Ibuild/src.freebsd-8.2-PRERELEASE-i386-2.7/numpy/core/src/multiarray -Ibuild/src.freebsd-8.2-PRERELEASE-i386-2.7/numpy/core/src/umath -c'
gcc45: build/src.freebsd-8.2-PRERELEASE-i386-2.7/numpy/core/src/_sortmodule.c
cc -shared -pthread -mtune=generic -msse -msse2 -msse3 -mfpmath=sse -O2 -fno-strict-aliasing -pipe -Wl,-rpath=/usr/local/lib/gcc45 build/temp.freebsd-8.2-PRERELEASE-i386-2.7/build/src.freebsd-8.2-PRERELEASE-i386-2.7/numpy/core/src/_sortmodule.o -Lbuild/temp.freebsd-8.2-PRERELEASE-i386-2.7 -lm -o build/lib.freebsd-8.2-PRERELEASE-i386-2.7/numpy/core/_sort.so
build/temp.freebsd-8.2-PRERELEASE-i386-2.7/build/src.freebsd-8.2-PRERELEASE-i386-2.7/numpy/core/src/_sortmodule.o(.text.__i686.get_pc_thunk.bx+0x0): In function `__i686.get_pc_thunk.bx':
: multiple definition of `__i686.get_pc_thunk.bx'
/usr/lib/crtbeginS.o(.gnu.linkonce.t.__i686.get_pc_thunk.bx+0x0): first defined here
build/temp.freebsd-8.2-PRERELEASE-i386-2.7/build/src.freebsd-8.2-PRERELEASE-i386-2.7/numpy/core/src/_sortmodule.o(.text.__i686.get_pc_thunk.bx+0x0): In function `__i686.get_pc_thunk.bx':
: multiple definition of `__i686.get_pc_thunk.bx'
/usr/lib/crtbeginS.o(.gnu.linkonce.t.__i686.get_pc_thunk.bx+0x0): first defined here
error: Command "cc -shared -pthread -mtune=generic -msse -msse2 -msse3 -mfpmath=sse -O2 -fno-strict-aliasing -pipe -Wl,-rpath=/usr/local/lib/gcc45 build/temp.freebsd-8.2-PRERELEASE-i386-2.7/build/src.freebsd-8.2-PRERELEASE-i386-2.7/numpy/core/src/_sortmodule.o -Lbuild/temp.freebsd-8.2-PRERELEASE-i386-2.7 -lm -o build/lib.freebsd-8.2-PRERELEASE-i386-2.7/numpy/core/_sort.so" failed with exit status 1
*** Error code 1

Stop in /usr/ports/math/py-numpy.





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