Fwd: boost-python-libs and associated compile errors

David Southwell david at vizion2000.net
Tue Sep 1 14:00:09 UTC 2009 

> I have just completed
> # portupgrade -fRra
> following a system upgrade from freebsd 7.2 p2 to p3
>
> after a few minor hiccups and recompiling some of the ports I am left with
> four failing ports. As at least three of them seem to share some common
> features. If anyone would be willing to help me out here it would be most
> appreciated.
> The failure list is:
>
> ! science/openbabel (openbabel-2.2.1)   (unknown build error)
> * misc/kdeedu4 (kdeedu-4.2.4)
> ! graphics/blender (blender-2.49a_1)    (unknown build error)
> ! deskutils/kdeplasma-addons (kdeplasma-addons-4.2.4_1) (missing header)
>
> The errors reports are shown below in the same order.
> The common features are:
> problems with compiling boost-python-libs
> threading issues
>
> ######
>  ! science/openbabel (openbabel-2.2.1)   (unknown build error)
> ######
>
> In file included from /usr/include/c++/4.2/bits/gthr.h:114,
>                  from /usr/include/c++/4.2/bits/c++io.h:43,
>                  from /usr/include/c++/4.2/iosfwd:46,
>                  from /usr/include/c++/4.2/ios:43,
>                  from /usr/include/c++/4.2/ostream:45,
>                  from /usr/include/c++/4.2/iterator:70,
>                  from ./boost/iterator.hpp:17,
>                  from ./boost/operators.hpp:81,
>                  from ./boost/python/type_id.hpp:11,
>                  from ./boost/python/converter/registrations.hpp:10,
>                  from libs/python/src/object/function_doc_signature.cpp:6:
> /usr/include/c++/4.2/bits/gthr-default.h: In function 'int
> __gthread_active_p()':
> /usr/include/c++/4.2/bits/gthr-default.h:174: error: conversion from 'int'
> to non-scalar type 'pthread_once' requested
> ...failed gcc.compile.c++ bin.v2/libs/python/build/gcc-4.2.1/release/link-
> static/threading-multi/object/function_doc_signature.o...
> ...skipped
> <pbin.v2/libs/python/build/gcc-4.2.1/release/link-static/threading-
> multi>libboost_python.a(clean) for lack of
> <pbin.v2/libs/python/build/gcc-4.2.1/release/link-static/threading-
> multi>numeric.o...
> ...skipped
> <pbin.v2/libs/python/build/gcc-4.2.1/release/link-static/threading-
> multi>libboost_python.a for lack of
> <pbin.v2/libs/python/build/gcc-4.2.1/release/link-static/threading-
> multi>numeric.o...
> ...skipped <pstage/lib>libboost_python.a for lack of
> <pbin.v2/libs/python/build/gcc-4.2.1/release/link-static/threading-
> multi>libboost_python.a...
> ...failed updating 54 targets...
> ...skipped 5 targets...
> ...updated 17 targets...
> *** Error code 1
>
> Stop in /usr/ports/devel/boost-python-libs.
> *** Error code 1
>
> Stop in /usr/ports/devel/boost-python-libs.
> *** Error code 1
>
> Stop in /usr/ports/science/openbabel.
> ** Command failed [exit code 1]: /usr/bin/script -qa
> /tmp/portupgrade20090826-26960-1q590yk-0 env UPGRADE_TOOL=portupgrade
> UPGRADE_PORT=openbabel-2.2.1 UPGRADE_PORT_VER=2.2.1 make
> ** Fix the problem and try again.
> ######
> * misc/kdeedu4 (kdeedu-4.2.4)
> ######
>
> In file included from /usr/include/c++/4.2/bits/gthr-default.h:43,
>                  from /usr/include/c++/4.2/bits/gthr.h:114,
>                  from /usr/include/c++/4.2/bits/c++io.h:43,
>                  from /usr/include/c++/4.2/iosfwd:46,
>                  from /usr/include/c++/4.2/ios:43,
>                  from /usr/include/c++/4.2/ostream:45,
>                  from /usr/include/c++/4.2/iterator:70,
>                  from ./boost/iterator.hpp:17,
>                  from ./boost/operators.hpp:81,
>                  from ./boost/python/type_id.hpp:11,
>                  from ./boost/python/converter/registrations.hpp:10,
>                  from libs/python/src/object/function_doc_signature.cpp:6:
> /usr/local/include/python2.6/pthread.h:285: error: conflicting declaration
> 'typedef struct pthread_st* pthread_t'
> /usr/include/sys/_pthreadtypes.h:64: error: 'pthread_t' has a previous
> declaration as 'typedef struct pthread* pthread_t'
> /usr/local/include/python2.6/pthread.h:286: error: conflicting declaration
> 'typedef struct pthread_attr_st* pthread_attr_t'
> /usr/include/sys/_pthreadtypes.h:65: error: 'pthread_attr_t' has a previous
> declaration as 'typedef struct pthread_attr* pthread_attr_t'
> /usr/local/include/python2.6/pthread.h:288: error: conflicting declaration
> 'typedef int pthread_once_t'
> /usr/include/sys/_pthreadtypes.h:71: error: 'pthread_once_t' has a previous
> declaration as 'typedef struct pthread_once pthread_once_t'
> /usr/local/include/python2.6/pthread.h:289: error: conflicting declaration
> 'typedef int pthread_mutexattr_t'
> /usr/include/sys/_pthreadtypes.h:67: error: 'pthread_mutexattr_t' has a
> previous declaration as 'typedef struct pthread_mutex_attr*
> pthread_mutexattr_t'
> /usr/local/include/python2.6/pthread.h:290: error: conflicting declaration
> 'typedef struct pthread_mutex_st* pthread_mutex_t'
> /usr/include/sys/_pthreadtypes.h:66: error: 'pthread_mutex_t' has a
> previous declaration as 'typedef struct pthread_mutex* pthread_mutex_t'
> /usr/local/include/python2.6/pthread.h:291: error: conflicting declaration
> 'typedef int pthread_condattr_t'
> /usr/include/sys/_pthreadtypes.h:69: error: 'pthread_condattr_t' has a
> previous declaration as 'typedef struct pthread_cond_attr*
> pthread_condattr_t' /usr/local/include/python2.6/pthread.h:292: error:
> conflicting declaration 'typedef struct pthread_cond_st* pthread_cond_t'
> /usr/include/sys/_pthreadtypes.h:68: error: 'pthread_cond_t' has a previous
> declaration as 'typedef struct pthread_cond* pthread_cond_t'
> /usr/local/include/python2.6/pthread.h:293: error: conflicting declaration
> 'typedef int pthread_rwlockattr_t'
> /usr/include/sys/_pthreadtypes.h:73: error: 'pthread_rwlockattr_t' has a
> previous declaration as 'typedef struct pthread_rwlockattr*
> pthread_rwlockattr_t'
> /usr/local/include/python2.6/pthread.h:294: error: conflicting declaration
> 'typedef struct pthread_rwlock_st* pthread_rwlock_t'
> /usr/include/sys/_pthreadtypes.h:72: error: 'pthread_rwlock_t' has a
> previous declaration as 'typedef struct pthread_rwlock* pthread_rwlock_t'
> In file included from /usr/include/c++/4.2/bits/gthr.h:114,
>                  from /usr/include/c++/4.2/bits/c++io.h:43,
>                  from /usr/include/c++/4.2/iosfwd:46,
>                  from /usr/include/c++/4.2/ios:43,
>                  from /usr/include/c++/4.2/ostream:45,
>                  from /usr/include/c++/4.2/iterator:70,
>                  from ./boost/iterator.hpp:17,
>                  from ./boost/operators.hpp:81,
>                  from ./boost/python/type_id.hpp:11,
>                  from ./boost/python/converter/registrations.hpp:10,
>                  from libs/python/src/object/function_doc_signature.cpp:6:
> /usr/include/c++/4.2/bits/gthr-default.h: In function 'int
> __gthread_active_p()':
> /usr/include/c++/4.2/bits/gthr-default.h:174: error: conversion from 'int'
> to non-scalar type 'pthread_once' requested
> ...failed gcc.compile.c++ bin.v2/libs/python/build/gcc-4.2.1/release/link-
> static/threading-multi/object/function_doc_signature.o...
> ...skipped
> <pbin.v2/libs/python/build/gcc-4.2.1/release/link-static/threading-
> multi>libboost_python.a(clean) for lack of
> <pbin.v2/libs/python/build/gcc-4.2.1/release/link-static/threading-
> multi>numeric.o...
> ...skipped
> <pbin.v2/libs/python/build/gcc-4.2.1/release/link-static/threading-
> multi>libboost_python.a for lack of
> <pbin.v2/libs/python/build/gcc-4.2.1/release/link-static/threading-
> multi>numeric.o...
> ...skipped <pstage/lib>libboost_python.a for lack of
> <pbin.v2/libs/python/build/gcc-4.2.1/release/link-static/threading-
> multi>libboost_python.a...
> ...failed updating 54 targets...
> ...skipped 5 targets...
> ...updated 17 targets...
> *** Error code 1
>
> Stop in /usr/ports/devel/boost-python-libs.
> *** Error code 1
>
> Stop in /usr/ports/devel/boost-python-libs.
> *** Error code 1
>
> Stop in /usr/ports/misc/kdeedu4.
> ######
>  ! graphics/blender (blender-2.49a_1)    (unknown build error)
> ######
> /usr/local/include/python2.6/pthread.h:285: error: conflicting declaration
> 'typedef struct pthread_st* pthread_t'
> /usr/include/sys/_pthreadtypes.h:64: error: 'pthread_t' has a previous
> declaration as 'typedef struct pthread* pthread_t'
> /usr/local/include/python2.6/pthread.h:286: error: conflicting declaration
> 'typedef struct pthread_attr_st* pthread_attr_t'
> /usr/include/sys/_pthreadtypes.h:65: error: 'pthread_attr_t' has a previous
> declaration as 'typedef struct pthread_attr* pthread_attr_t'
> /usr/local/include/python2.6/pthread.h:288: error: conflicting declaration
> 'typedef int pthread_once_t'
> /usr/include/sys/_pthreadtypes.h:71: error: 'pthread_once_t' has a previous
> declaration as 'typedef struct pthread_once pthread_once_t'
> /usr/local/include/python2.6/pthread.h:289: error: conflicting declaration
> 'typedef int pthread_mutexattr_t'
> /usr/include/sys/_pthreadtypes.h:67: error: 'pthread_mutexattr_t' has a
> previous declaration as 'typedef struct pthread_mutex_attr*
> pthread_mutexattr_t'
> /usr/local/include/python2.6/pthread.h:290: error: conflicting declaration
> 'typedef struct pthread_mutex_st* pthread_mutex_t'
> /usr/include/sys/_pthreadtypes.h:66: error: 'pthread_mutex_t' has a
> previous declaration as 'typedef struct pthread_mutex* pthread_mutex_t'
> /usr/local/include/python2.6/pthread.h:291: error: conflicting declaration
> 'typedef int pthread_condattr_t'
> /usr/include/sys/_pthreadtypes.h:69: error: 'pthread_condattr_t' has a
> previous declaration as 'typedef struct pthread_cond_attr*
> pthread_condattr_t' /usr/local/include/python2.6/pthread.h:292: error:
> conflicting declaration 'typedef struct pthread_cond_st* pthread_cond_t'
> /usr/include/sys/_pthreadtypes.h:68: error: 'pthread_cond_t' has a previous
> declaration as 'typedef struct pthread_cond* pthread_cond_t'
> /usr/local/include/python2.6/pthread.h:293: error: conflicting declaration
> 'typedef int pthread_rwlockattr_t'
> /usr/include/sys/_pthreadtypes.h:73: error: 'pthread_rwlockattr_t' has a
> previous declaration as 'typedef struct pthread_rwlockattr*
> pthread_rwlockattr_t'
> /usr/local/include/python2.6/pthread.h:294: error: conflicting declaration
> 'typedef struct pthread_rwlock_st* pthread_rwlock_t'
> /usr/include/sys/_pthreadtypes.h:72: error: 'pthread_rwlock_t' has a
> previous declaration as 'typedef struct pthread_rwlock* pthread_rwlock_t'
> In file included from /usr/include/c++/4.2/bits/gthr.h:114,
>                  from /usr/include/c++/4.2/bits/c++io.h:43,
>                  from /usr/include/c++/4.2/iosfwd:46,
>                  from /usr/include/c++/4.2/bits/stl_algobase.h:70,
>                  from /usr/include/c++/4.2/vector:66,
>                  from
> /usr/ports/graphics/blender/work/blender-2.49a/../lib/freebsd-7.2-
> x86_64/string/include/STR_String.h:45,
>                  from ../GHOST_IWindow.h:36,
>                  from ../GHOST_ISystem.h:40,
>                  from GHOST_System.h:36,
>                  from GHOST_SystemX11.h:39,
>                  from GHOST_SystemX11.cpp:33:
> /usr/include/c++/4.2/bits/gthr-default.h: In function 'int
> __gthread_active_p()':
> /usr/include/c++/4.2/bits/gthr-default.h:174: error: conversion from 'int'
> to non-scalar type 'pthread_once' requested
> gmake[3]: ***
> [/usr/ports/graphics/blender/work/blender-2.49a/obj/freebsd-7.2-
> x86_64/intern/ghost/GHOST_SystemX11.o] Error 1
> gmake[2]: *** [all] Error 1
> gmake[1]: *** [all] Error 1
> gmake: *** [all] Error 1
> *** Error code 1
>
> Stop in /usr/ports/graphics/blender.
> *** Error code 1
>
> Stop in /usr/ports/graphics/blender.
>
>
> ######
> ! deskutils/kdeplasma-addons (kdeplasma-addons-4.2.4_1) (missing header)
> ######
> Scanning dependencies of target plasma_wallpaper_virus
> [ 59%] Building CXX object
> wallpapers/virus/CMakeFiles/plasma_wallpaper_virus.dir/plasma_wallpaper_vir
>us_automoc.cpp.o [ 60%] Building CXX object
> dataengines/ocs/lib/CMakeFiles/ocsclient.dir/categoryparser.o
> [ 60%] Building CXX object
> wallpapers/virus/CMakeFiles/plasma_wallpaper_virus.dir/backgrounddelegate.c
>pp.o /usr/ports/deskutils/kdeplasma-addons/work/kdeplasma-
> addons-4.3.0/wallpapers/marble/marble.cpp: In member function 'virtual void
> Marble::MarbleWallpaper::init(const KConfigGroup&)':
> /usr/ports/deskutils/kdeplasma-addons/work/kdeplasma-
> addons-4.3.0/wallpapers/marble/marble.cpp:84: error: 'RenderPlugin' was not
> declared in this scope
> /usr/ports/deskutils/kdeplasma-addons/work/kdeplasma-
> addons-4.3.0/wallpapers/marble/marble.cpp:84: error: 'item' was not
> declared in this scope
> *** Error code 1
> 1 error
> *** Error code 2
> [ 60%] Building CXX object
> dataengines/ocs/lib/CMakeFiles/ocsclient.dir/content.o
> Linking CXX shared module ../../lib/plasma_wallpaper_pattern.so
> [ 61%] Building CXX object
> wallpapers/virus/CMakeFiles/plasma_wallpaper_virus.dir/alife.cpp.o
> [ 61%] Built target plasma_wallpaper_pattern
> [ 61%] Building CXX object
> dataengines/ocs/lib/CMakeFiles/ocsclient.dir/contentjob.o
> [ 61%] Building CXX object
> wallpapers/virus/CMakeFiles/plasma_wallpaper_virus.dir/backgroundlistmodel.
>cpp.o [ 61%] Building CXX object
> wallpapers/virus/CMakeFiles/plasma_wallpaper_virus.dir/virus.cpp.o
> [ 61%] Building CXX object
> dataengines/ocs/lib/CMakeFiles/ocsclient.dir/contentlistjob.o
> [ 61%] Building CXX object
> dataengines/ocs/lib/CMakeFiles/ocsclient.dir/contentparser.o
> [ 62%] Building CXX object
> dataengines/ocs/lib/CMakeFiles/ocsclient.dir/knowledgebase.o
> [ 62%] Building CXX object
> dataengines/ocs/lib/CMakeFiles/ocsclient.dir/knowledgebasejob.o
> [ 62%] Building CXX object
> dataengines/ocs/lib/CMakeFiles/ocsclient.dir/knowledgebaselistjob.o
> [ 62%] Building CXX object
> dataengines/ocs/lib/CMakeFiles/ocsclient.dir/knowledgebaseparser.o
> Linking CXX shared module ../../lib/plasma_wallpaper_virus.so
> [ 62%] Built target plasma_wallpaper_virus
> Linking CXX shared library ../../../lib/libocsclient.so
> [ 62%] Built target ocsclient
> 1 error
> *** Error code 2
> 1 error
> *** Error code 1
>
> Stop in /usr/ports/deskutils/kdeplasma-addons.
> ** Command failed [exit code 1]: /usr/bin/script -qa
> /tmp/portupgrade20090826-39449-uq4f3v-0 env UPGRADE_TOOL=portupgrade
> UPGRADE_PORT=kdeplasma-addons-4.2.4_1 UPGRADE_PORT_VER=4.2.4_1 make
> ** Fix the problem and try again.
> ** Listing the failed packages (-:ignored / *:skipped / !:failed)
>
>
>         ! science/openbabel (openbabel-2.2.1)   (unknown build error)
>         * misc/kdeedu4 (kdeedu-4.2.4)
>         ! graphics/blender (blender-2.49a_1)    (unknown build error)
>         ! deskutils/kdeplasma-addons (kdeplasma-addons-4.2.4_1) (missing
> header)
>
> Thanks in advance
>
> David
Comments would be appreciated

Thanks

David

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