boost-python-libs and associated compile errors

David Southwell david at vizion2000.net
Thu Sep 3 15:48:40 UTC 2009


> On Wednesday 26 August 2009 16:07:56 David Southwell wrote:
> > I have just completed
> > # portupgrade -fRra
> > following a system upgrade from freebsd 7.2 p2 to p3
> >
> > after a few minor hiccuups and recompiling ssome of the ports I am left
> > with four failing ports. As at least three of them seem to share some
> > common features. If anyone would be willing to help me out here it would
> > be most appreciated.
> > The failure list is:
> >
> > ! science/openbabel (openbabel-2.2.1)   (unknown build error)
> > * misc/kdeedu4 (kdeedu-4.2.4)
> > ! graphics/blender (blender-2.49a_1)    (unknown build error)
> > ! deskutils/kdeplasma-addons (kdeplasma-addons-4.2.4_1) (missing header)
> >
> > The errors reports are shown below in the same order.
> > The common features are:
> > problems with compiling boost-python-libs
> > threading issues
> >
> > ######
> >  ! science/openbabel (openbabel-2.2.1)   (unknown build error)
> > ######
> >
> > In file included from /usr/include/c++/4.2/bits/gthr.h:114,
> >                  from /usr/include/c++/4.2/bits/c++io.h:43,
> >                  from /usr/include/c++/4.2/iosfwd:46,
> >                  from /usr/include/c++/4.2/ios:43,
> >                  from /usr/include/c++/4.2/ostream:45,
> >                  from /usr/include/c++/4.2/iterator:70,
> >                  from ./boost/iterator.hpp:17,
> >                  from ./boost/operators.hpp:81,
> >                  from ./boost/python/type_id.hpp:11,
> >                  from ./boost/python/converter/registrations.hpp:10,
> >                  from
> > libs/python/src/object/function_doc_signature.cpp:6:
> > /usr/include/c++/4.2/bits/gthr-default.h: In function 'int
> > __gthread_active_p()':
> > /usr/include/c++/4.2/bits/gthr-default.h:174: error: conversion from
> > 'int' to non-scalar type 'pthread_once' requested
> > ...failed gcc.compile.c++
> > bin.v2/libs/python/build/gcc-4.2.1/release/link-
> > static/threading-multi/object/function_doc_signature.o...
> > ...skipped
> > <pbin.v2/libs/python/build/gcc-4.2.1/release/link-static/threading-
> > multi>libboost_python.a(clean) for lack of
> > <pbin.v2/libs/python/build/gcc-4.2.1/release/link-static/threading-
> > multi>numeric.o...
> > ...skipped
> > <pbin.v2/libs/python/build/gcc-4.2.1/release/link-static/threading-
> > multi>libboost_python.a for lack of
> > <pbin.v2/libs/python/build/gcc-4.2.1/release/link-static/threading-
> > multi>numeric.o...
> > ...skipped <pstage/lib>libboost_python.a for lack of
> > <pbin.v2/libs/python/build/gcc-4.2.1/release/link-static/threading-
> > multi>libboost_python.a...
> > ...failed updating 54 targets...
> > ...skipped 5 targets...
> > ...updated 17 targets...
> > *** Error code 1
> >
> > Stop in /usr/ports/devel/boost-python-libs.
> > *** Error code 1
> >
> > Stop in /usr/ports/devel/boost-python-libs.
> > *** Error code 1
> >
> > Stop in /usr/ports/science/openbabel.
> > ** Command failed [exit code 1]: /usr/bin/script -qa
> > /tmp/portupgrade20090826-26960-1q590yk-0 env UPGRADE_TOOL=portupgrade
> > UPGRADE_PORT=openbabel-2.2.1 UPGRADE_PORT_VER=2.2.1 make
> > ** Fix the problem and try again.
> > ######
> > * misc/kdeedu4 (kdeedu-4.2.4)
> > ######
> >
> > In file included from /usr/include/c++/4.2/bits/gthr-default.h:43,
> >                  from /usr/include/c++/4.2/bits/gthr.h:114,
> >                  from /usr/include/c++/4.2/bits/c++io.h:43,
> >                  from /usr/include/c++/4.2/iosfwd:46,
> >                  from /usr/include/c++/4.2/ios:43,
> >                  from /usr/include/c++/4.2/ostream:45,
> >                  from /usr/include/c++/4.2/iterator:70,
> >                  from ./boost/iterator.hpp:17,
> >                  from ./boost/operators.hpp:81,
> >                  from ./boost/python/type_id.hpp:11,
> >                  from ./boost/python/converter/registrations.hpp:10,
> >                  from
> > libs/python/src/object/function_doc_signature.cpp:6:
> > /usr/local/include/python2.6/pthread.h:285: error: conflicting
> > declaration 'typedef struct pthread_st* pthread_t'
>
>                           ^^
>
> David, I really think that your previous escapade with pth+python has
> screwed up boost-python. Did you recompile boost after removing pth from
> python? Because, pth/pthread.h:
>    282   /*
>    283    * Primitive system data type definitions required by P1003.1c
>    284    */
>    285   typedef struct  pthread_st              *pthread_t;
>                                  ^^
After the last escapade I did a complete system rebuild and a total rebuild of 
all ports including python.

But let us assume the worst. How would you suggest I do a complete rebuild of 
the relevant dependencies? I have already tried portupgrade -rRfa but still 
have the problem.

david


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