FreeBSD Port: hmmer-2.2.g_1

Mauricio Herrera Cuadra arareko at
Mon Aug 30 23:07:28 PDT 2004

Hi. Is it possible to install this port with PVM support? I've been
tweaking the Makefiles, but no good results. I've symlinked
/usr/local/include into /usr/local/lib/pvm in order to find pvm3.h during
compilation, but then I get this and I'm stuck on it:

[root at arareko] /usr/ports/biology/hmmer # make
===>  Building for hmmer-2.2.g_1
gcc -g -O2 -DHAVE_CONFIG_H -L/usr/local/lib/pvm/lib/FREEBSD -o afetch
afetch_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o
eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o
revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o
sre_ctype.o sre_math.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o
translate.o types.o weight.o -lpvm3 -lm
/usr/libexec/elf/ld: cannot find -lpvm3
*** Error code 1

Stop in /usr/ports/biology/hmmer/work/hmmer-2.2g/squid.
*** Error code 1

Stop in /usr/ports/biology/hmmer/work/hmmer-2.2g.
*** Error code 1

Stop in /usr/ports/biology/hmmer.

Thanks in advance.

arareko at

"I've seen 5.11 divided into 11 different grades of increasing difficulty, as follows: 5.11a, 5.10d, 5.11-, 5.11b, 5.11, 5.11c, 5.9 squeeze, 5.11+, 5.10 OW, 5.12a, 5.11d"    — Brutus of Wyde.

Version: 3.12
GCM/CS/IT/LS/MD/MU/PA/S/TW/O>B/M/P/AT$ d-(---)>!$ s+:+>$ a26>+++>?$ 
C(++++)>---$ UBL+++>UAVHIOSCX*---$ P++++(--)>--- L->+$ E-(--)>+++$ 
W+(+++)>-- N+>- o+++(--) K?>$ w+(---)>$ !O M>+$ !V PS+(+++) PE(-) Y(+) 
PGP(-)>+ t(-)>+++$ 5 X@>+$ R*>+++$ tv(+)>+$ b+>+++$ DI+++>+++$ 
D+++>++++$ G++(-)>++++$ e++>++++$ h!>---$ r%>++ y+(**)>+$ 

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